Rorug07G0059500

Blue copper

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
4266959 .. 4267288
330 bp
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UTR
Exon/CDS
Intron
Rorug07G0059500.1

Sequence Viewer

Length: 330 bp
ATGTCACAATTCAATGACTTGTCACCATACACCTACACTGGTTTTGATAAAACTGCCGCAGCGGAGCAAAGCCTTAACCATGAAAGAAGGCTCAAGAGACTGACTTCCAACAGGGAATCTGCACGAAGGTCGCGAATGCGTAAGAAGAAGCAGATTCAAGAGCTCCAGCATGAGGTGGAGCAGCTCTATGTTGCAAATAATCAGCTATCTGGGAAGCTTATCCAAATGTTAGAGGTAAACCAGCAGATTCTTCAGGGGAATGCTCAGCTAAAAGAGAGAGTTTCTTCCCTTCAAGTCACCTTTGCTGATCTCATTGATGTAACCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.7

Weight (kDa)

9.62

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 28 - 76 1.6e-08 Basic region leucine zipper
bZIP_1 PF00170 29 - 85 5.3e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 133
AciI CCGC 2 cut(s) 57, 62
AcuI CTGAAG 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 3 cut(s) 13, 158, 293
AluBI AGCT 5 cut(s) 163, 184, 205, 217, 268
AluI AGCT 5 cut(s) 163, 184, 205, 217, 268
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 59, 181
AsuHPI GGTGA 2 cut(s) 15, 289
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 71, 193
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BcoDI GTCTC 1 cut(s) 91
BisI GCNGC 3 cut(s) 57, 60, 182
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 3 cut(s) 58, 61, 183
BpmI CTGGAG 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 71, 193
BsgI GTGCAG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 91
BsmI GAATGC 2 cut(s) 141, 265
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 307
Bsp1720I GCTNAGC 1 cut(s) 264
Bsp68I TCGCGA 1 cut(s) 133
BspACI CCGC 2 cut(s) 57, 62
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 43
BssMI GATC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 307
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 71, 193
BtsIMutI CAGTG 1 cut(s) 36
BtuMI TCGCGA 1 cut(s) 133
CviAII CATG 2 cut(s) 80, 170
CviJI RGCY 7 cut(s) 72, 91, 163, 184, 205, 217, 268
CviKI_1 RGCY 7 cut(s) 72, 91, 163, 184, 205, 217, 268
DdeI CTNAG 1 cut(s) 264
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 2 cut(s) 83, 173
FaiI YATR 4 cut(s) 28, 81, 171, 189
FatI CATG 2 cut(s) 79, 169
Fnu4HI GCNGC 3 cut(s) 57, 60, 182
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 57, 60, 182
GluI GCNGC 3 cut(s) 57, 60, 182
GsuI CTGGAG 1 cut(s) 149
Hin1II CATG 2 cut(s) 83, 173
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 3 cut(s) 116, 154, 247
HphI GGTGA 2 cut(s) 15, 289
Hpy166II GTNNAC 1 cut(s) 238
Hpy188III TCNNGA 3 cut(s) 94, 132, 158
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 3 cut(s) 81, 120, 299
HpyCH4V TGCA 2 cut(s) 122, 194
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 2 cut(s) 83, 173
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 3 cut(s) 64, 168, 178
LpnPI CCDG 6 cut(s) 24, 97, 179, 195, 239, 254
Lsp1109I GCAGC 2 cut(s) 71, 193
MaeIII GTNAC 4 cut(s) 3, 21, 295, 319
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 157, 242, 276
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 2 cut(s) 166, 226
MseI TTAA 2 cut(s) 75, 328
MspA1I CMGCKG 1 cut(s) 62
Mva1269I GAATGC 2 cut(s) 141, 265
MvnI CGCG 1 cut(s) 133
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 83, 173
NmuCI GTSAC 3 cut(s) 3, 21, 295
NruI TCGCGA 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PctI GAATGC 2 cut(s) 141, 265
PfeI GAWTC 3 cut(s) 116, 154, 247
PkrI GCNGC 3 cut(s) 58, 61, 183
Psp124BI GAGCTC 1 cut(s) 165
RruI TCGCGA 1 cut(s) 133
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 75, 328
SatI GCNGC 3 cut(s) 57, 60, 182
Sau3AI GATC 1 cut(s) 307
SduI GDGCHC 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 8
SsiI CCGC 2 cut(s) 57, 62
SstI GAGCTC 1 cut(s) 165
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 3 cut(s) 116, 154, 247
Tru1I TTAA 2 cut(s) 75, 328
Tru9I TTAA 2 cut(s) 75, 328
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 3 cut(s) 3, 21, 295
TseI GCWGC 2 cut(s) 59, 181
Tsp45I GTSAC 3 cut(s) 3, 21, 295
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.