MD04G1075800.v1.1

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000318
Physical Location & Seq
Reverse (-)
10137682 .. 10138212
531 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1075800.v1.1.491

Sequence Viewer

Length: 342 bp
ATGGCCACTTCCCAGCTCTTCCTAATCCTAGCCATTCTAGCACTTTTTGCACCTTCAATTTTAGCAACGGATTATGTTGTTGGCAATGACAAAGGGTGGACGATTAATTTTGATTACCAAGTTTGGGCTCAGGGAAAGACGTTCTATGTTGGTGACAACCTTGTTTTTAACTATCCAAAAGGCGCCCACAATGTGTTCAAAGTGAACGGCACAGGCTTTCAAGAATGCTCAGCTCCATTAGATTCTGTGCCATTAACAAGTGGAAAGGATGTGATAAACCTTGCAACCCAGGAAGAAAAAGTTGAATATCAAAGTACGCAACGAACGAGATTAACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

114

Amino Acids

12.54

Weight (kDa)

5.67

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 97 1.5e-17 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 183
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 4 cut(s) 57, 199, 221, 305
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 2 cut(s) 16, 233
AluI AGCT 2 cut(s) 16, 233
AoxI GGCC 1 cut(s) 3
AseI ATTAAT 1 cut(s) 105
AspLEI GCGC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 164
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 290
BfaI CTAG 2 cut(s) 29, 38
BfoI RGCGCY 1 cut(s) 186
BlpI GCTNAGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 229
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 91
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 143, 243
BseYI CCCAGC 1 cut(s) 12
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 124
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1720I GCTNAGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 142, 242
BspLI GGNNCC 1 cut(s) 184
BspQI GCTCTTC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 288
BssNI GRCGYC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 129, 229
BstF5I GGATG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 38, 47
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 288
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 274
CfoI GCGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 315
CviJI RGCY 6 cut(s) 5, 16, 32, 128, 216, 233
CviKI_1 RGCY 6 cut(s) 5, 16, 32, 128, 216, 233
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 2 cut(s) 129, 229
DinI GGCGCC 1 cut(s) 184
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 130
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
FaiI YATR 2 cut(s) 75, 147
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 130
FspBI CTAG 2 cut(s) 29, 38
GlaI GCGC 1 cut(s) 184
GsaI CCCAGC 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 183
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 1 cut(s) 242
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 99, 205
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 99, 205
HpyAV CCTTC 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 50, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 47
HpyF3I CTNAG 2 cut(s) 129, 229
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 183
HspAI GCGC 1 cut(s) 183
KasI GGCGCC 1 cut(s) 182
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 5 cut(s) 26, 116, 198, 275, 302
MaeI CTAG 2 cut(s) 29, 38
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 152
MboII GAAGA 2 cut(s) 10, 305
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 57, 106
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 183
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 105, 168, 254, 332
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 38, 47
NarI GGCGCC 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PctI GAATGC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 242
PluTI GGCGCC 1 cut(s) 186
PshBI ATTAAT 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 288
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 184
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 4 cut(s) 105, 168, 254, 332
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 130
SetI ASST 6 cut(s) 18, 55, 143, 162, 235, 282
SfoI GGCGCC 1 cut(s) 184
Sse9I AATT 2 cut(s) 57, 106
SspDI GGCGCC 1 cut(s) 182
SspMI CTAG 2 cut(s) 29, 38
StyD4I CCNGG 1 cut(s) 288
TaiI ACGT 1 cut(s) 143
TasI AATT 2 cut(s) 57, 106
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 4 cut(s) 105, 168, 254, 332
Tru9I TTAA 4 cut(s) 105, 168, 254, 332
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 83
VspI ATTAAT 1 cut(s) 105
XspI CTAG 2 cut(s) 29, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.