RLG00000003735

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000318
Physical Location & Seq
Reverse (-)
52181351 .. 52181782
432 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003735

Sequence Viewer

Length: 321 bp
ATGTTGTGGGTGACGAAGAAGGTTGGAACGTTAAATTTTGACTATGAAGCTTGGGTTAAAGGAAAGCAGTTCCATGTCGGTGACAGCCTTAGTAAGTGTCCATGCCACAATGTGGTTGAAGTGAAGGAGAAGGAGTTCAAAGAATGTGCAGGTCCTTCTAGCACTAGGCCATTAACAAGTGGAGAGGATGTGATCAAGCTTGATGGTCCAGGAAAGAAATGGTTCATTTGCAGTGTTGCTAAACATTGTGAGTTGGGCAACCAGAAGGTTGCTATTAACGTGCTATCATCTTCGTCTTCCTCTTCCTCTGCTCCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

107

Amino Acids

11.52

Weight (kDa)

8.62

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 12 - 86 5.6e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 112
AclI AACGTT 1 cut(s) 29
AcsI RAATTY 1 cut(s) 34
AdeI CACNNNGTG 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 119, 139
AjnI CCWGG 1 cut(s) 208
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 3 cut(s) 50, 199, 318
AluI AGCT 3 cut(s) 50, 199, 318
AoxI GGCC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 34
Asp700I GAANNNNTTC 2 cut(s) 134, 221
AspS9I GGNCC 2 cut(s) 152, 206
AsuHPI GGTGA 2 cut(s) 22, 92
AvaII GGWCC 2 cut(s) 152, 206
BbsI GAAGAC 1 cut(s) 288
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 192
BfaI CTAG 4 cut(s) 159, 165, 315, 319
BfuAI ACCTGC 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 2 cut(s) 152, 206
BmgT120I GGNCC 2 cut(s) 152, 206
BmrFI CCNGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 288
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 174, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 112
BsnI GGCC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 192
BspANI GGCC 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 140
BssMI GATC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 238
BveI ACCTGC 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 152, 206
CviAII CATG 2 cut(s) 74, 102
CviJI RGCY 5 cut(s) 50, 87, 169, 199, 318
CviKI_1 RGCY 5 cut(s) 50, 87, 169, 199, 318
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DraIII CACNNNGTG 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 152, 206
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 2 cut(s) 77, 105
FaiI YATR 3 cut(s) 45, 75, 103
FatI CATG 2 cut(s) 73, 101
FbaI TGATCA 1 cut(s) 192
FokI GGATG 1 cut(s) 200
FspBI CTAG 4 cut(s) 159, 165, 315, 319
HaeIII GGCC 1 cut(s) 169
Hin1II CATG 2 cut(s) 77, 105
HindIII AAGCTT 2 cut(s) 48, 197
HphI GGTGA 2 cut(s) 22, 92
HpyAV CCTTC 5 cut(s) 13, 118, 124, 165, 259
HpyCH4IV ACGT 2 cut(s) 29, 279
HpyCH4V TGCA 2 cut(s) 149, 231
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 2 cut(s) 29, 279
Hsp92II CATG 2 cut(s) 77, 105
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 4 cut(s) 135, 195, 222, 275
MaeI CTAG 4 cut(s) 159, 165, 315, 319
MaeII ACGT 2 cut(s) 29, 279
MaeIII GTNAC 2 cut(s) 10, 80
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 4 cut(s) 28, 282, 288, 294
MluCI AATT 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 3 cut(s) 178, 310, 316
MroXI GAANNNNTTC 2 cut(s) 134, 221
MseI TTAA 4 cut(s) 32, 57, 173, 276
MslI CAYNNNNRTG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
NdeII GATC 1 cut(s) 192
NlaIII CATG 2 cut(s) 77, 105
NmuCI GTSAC 2 cut(s) 10, 80
PdmI GAANNNNTTC 2 cut(s) 134, 221
PflMI CCANNNNNTGG 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 152
Psp1406I AACGTT 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspPI GGNCC 2 cut(s) 152, 206
PspPPI RGGWCCY 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 4 cut(s) 32, 57, 173, 276
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 2 cut(s) 152, 206
ScrFI CCNGG 1 cut(s) 210
SetI ASST 8 cut(s) 24, 32, 52, 154, 201, 270, 282, 320
SinI GGWCC 2 cut(s) 152, 206
SmiMI CAYNNNNRTG 1 cut(s) 78
Sse9I AATT 1 cut(s) 34
SspMI CTAG 4 cut(s) 159, 165, 315, 319
StyD4I CCNGG 1 cut(s) 208
TaiI ACGT 2 cut(s) 32, 282
TasI AATT 1 cut(s) 34
Tru1I TTAA 4 cut(s) 32, 57, 173, 276
Tru9I TTAA 4 cut(s) 32, 57, 173, 276
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 2 cut(s) 10, 80
Tsp45I GTSAC 2 cut(s) 10, 80
TspDTI ATGAA 2 cut(s) 60, 214
TspRI CASTG 1 cut(s) 238
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 152, 206
XapI RAATTY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmnI GAANNNNTTC 2 cut(s) 134, 221
XspI CTAG 4 cut(s) 159, 165, 315, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.