Rh7CG195200

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000318
Physical Location & Seq
Forward (+)
17167369 .. 17167701
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG195200.1

Sequence Viewer

Length: 333 bp
ATGCATGCAGTATTTAACTACCCAGAAGGAGCTCACAATGTGCTTAAGGTGAATGGAACTGGGTTCCAAGAATGTGCAGCTCCTGCAGGCACTGTGGCATTAACGAGTGGACAGGATGTGATAAACCTAGCAACGCCAGGAAGAAAATGGTACATTTGTGGTGTTTCTAAGCACTGTGAAGTTGGACCCCAGAAGCTTTTCATAACTGTTATGCCAGCTTCCTTTGCTCCTAGTCCAAGCCCTAGTACCTCTGCAGCAACTACAAGTGCTGTTAATGGAGCAAGATTTGGGTGGATGATCATTGTTACTGGCATTCTTGGGATGCTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

110

Amino Acids

11.44

Weight (kDa)

8.57

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 4 - 62 1.4e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 152, 247
AflII CTTAAG 1 cut(s) 44
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 4 cut(s) 32, 80, 196, 218
AluI AGCT 4 cut(s) 32, 80, 196, 218
Alw21I GWGCWC 1 cut(s) 34
AlwNI CAGNNNCTG 2 cut(s) 83, 92
ApeKI GCWGC 2 cut(s) 77, 254
Asp700I GAANNNNTTC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 185
BaeI ACNNNNGTAYC 2 cut(s) 142, 175
BanII GRGCYC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 2 cut(s) 89, 266
BciT130I CCWGG 1 cut(s) 138
BclI TGATCA 1 cut(s) 297
BfaI CTAG 4 cut(s) 128, 231, 243, 331
BfmI CTRYAG 2 cut(s) 84, 252
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 2 cut(s) 78, 255
BlsI GCNGC 2 cut(s) 79, 256
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 65, 187
BmrFI CCNGG 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 64, 313
Bse8I GATNNNNATC 1 cut(s) 326
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 3 cut(s) 121, 300, 327
BseJI GATNNNNATC 1 cut(s) 326
BseNI ACTGG 2 cut(s) 64, 313
BseXI GCAGC 2 cut(s) 89, 266
BsgI GTGCAG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 65, 187
BspMAI CTGCAG 2 cut(s) 88, 256
BspTI CTTAAG 1 cut(s) 44
BsrI ACTGG 2 cut(s) 64, 313
BssMI GATC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 3 cut(s) 94, 176, 208
BstAFI CTTAAG 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 6, 88, 216
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 3 cut(s) 121, 300, 327
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 2 cut(s) 83, 224
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 2 cut(s) 84, 252
BstV1I GCAGC 2 cut(s) 89, 266
BtsCI GGATG 3 cut(s) 121, 300, 327
BtsIMutI CAGTG 2 cut(s) 90, 172
Cac8I GCNNGC 3 cut(s) 6, 88, 216
CaiI CAGNNNCTG 2 cut(s) 83, 92
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 151, 246
CviAII CATG 1 cut(s) 5
CviJI RGCY 5 cut(s) 32, 80, 196, 218, 240
CviKI_1 RGCY 5 cut(s) 32, 80, 196, 218, 240
CviQI GTAC 2 cut(s) 151, 246
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
DraIII CACNNNGTG 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 34
FaeI CATG 1 cut(s) 8
FaiI YATR 3 cut(s) 6, 203, 212
FatI CATG 1 cut(s) 4
FbaI TGATCA 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 78, 255
FokI GGATG 2 cut(s) 128, 307
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 2 cut(s) 78, 255
FspBI CTAG 4 cut(s) 128, 231, 243, 331
GluI GCNGC 2 cut(s) 78, 255
Hin1II CATG 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 194
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 3 cut(s) 94, 176, 208
HpyCH4V TGCA 5 cut(s) 4, 8, 77, 86, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 224
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 4 cut(s) 29, 85, 232, 278
Lsp1109I GCAGC 2 cut(s) 89, 266
LweI GCATC 1 cut(s) 312
MaeI CTAG 4 cut(s) 128, 231, 243, 331
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 1 cut(s) 259
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 4 cut(s) 15, 45, 101, 273
MspCI CTTAAG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 312
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 83, 224
NdeII GATC 1 cut(s) 297
NlaIII CATG 1 cut(s) 8
NlaIV GGNNCC 2 cut(s) 65, 187
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PctI GAATGC 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 79, 256
Psp124BI GAGCTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 65, 187
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 2 cut(s) 88, 256
PstNI CAGNNNCTG 2 cut(s) 83, 92
RsaI GTAC 2 cut(s) 152, 247
RsaNI GTAC 2 cut(s) 151, 246
SacI GAGCTC 1 cut(s) 34
SaqAI TTAA 4 cut(s) 15, 45, 101, 273
SatI GCNGC 2 cut(s) 78, 255
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 185
SbfI CCTGCAGG 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 138
SdaI CCTGCAGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 34
SetI ASST 7 cut(s) 34, 51, 82, 129, 198, 220, 251
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 2 cut(s) 84, 252
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SphI GCATGC 1 cut(s) 8
Sse8387I CCTGCAGG 1 cut(s) 88
SspMI CTAG 4 cut(s) 128, 231, 243, 331
SstI GAGCTC 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 3 cut(s) 94, 176, 208
Tru1I TTAA 4 cut(s) 15, 45, 101, 273
Tru9I TTAA 4 cut(s) 15, 45, 101, 273
TscAI CASTG 2 cut(s) 97, 179
TseI GCWGC 2 cut(s) 77, 254
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 2 cut(s) 97, 179
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 185
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 4 cut(s) 128, 231, 243, 331
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.