Prupe.5G084000_v2.0.a1

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000318
Physical Location & Seq
Forward (+)
9652138 .. 9652770
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G084000.1

Sequence Viewer

Length: 522 bp
ATGGCCTCTTCCCAGCTCTTCATTATCCTTTCCATTCTAGCAATTTTTGTTCCTTCAACTTTGGCAACAGATTATGTTGTTGGTGACGACAAAGGTTGGACGATTAATTTCGATTACCAAGCTTGGGCTCAGGGAAAGTTGTTCTATGTTGGTGACAATCTTGTTTTTAACTATCCAAAAGGAGCCCACACTGTGCTCAAAGTGAACGGCACTGGATTTCAACAATGTGCAGCTCCATTAGACAGTGTGCCATTAACAAGTGGAAAAGATGTGATCAACCTTGCAACCCCAGGGAGAAAATGGTACATTTGTGGTGTTGGCCAGCACTGTGAAGTGGGGAACCAAAAGCTTGTTATAACTGTTCTGCCATCTTCATCTTCATCTGCCCCAAGCTCAAGCCCTAGCTCATGGCCTAGTGCCACAGCTGGGCCAGGCCCCAGTACATCTTCAGCAACTACAAGTGTTGGAACAAGATTTGCTTTGATGATGGTTACTATTGCCTTTGCGATGCTCATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

174

Amino Acids

18.19

Weight (kDa)

7.7

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 319
AcuI CTGAAG 1 cut(s) 432
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 305, 442
AfiI CCNNNNNNNGG 2 cut(s) 124, 426
AgsI TTSAA 2 cut(s) 57, 221
AjnI CCWGG 2 cut(s) 289, 430
AluBI AGCT 7 cut(s) 16, 122, 233, 349, 393, 405, 425
AluI AGCT 7 cut(s) 16, 122, 233, 349, 393, 405, 425
Alw21I GWGCWC 1 cut(s) 198
AoxI GGCC 5 cut(s) 3, 319, 410, 428, 433
ApeKI GCWGC 1 cut(s) 230
AseI ATTAAT 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 428, 434
AsuHPI GGTGA 2 cut(s) 95, 164
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BalI TGGCCA 1 cut(s) 321
BanII GRGCYC 2 cut(s) 130, 187
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 376, 481
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 2 cut(s) 291, 432
BclI TGATCA 1 cut(s) 273
BfaI CTAG 3 cut(s) 38, 402, 414
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 2 cut(s) 291, 432
BmgT120I GGNCC 2 cut(s) 428, 434
BmiI GGNNCC 3 cut(s) 184, 341, 436
BmrFI CCNGG 2 cut(s) 291, 432
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 498
BmuI ACTGGG 1 cut(s) 432
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 289, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 426
Bse1I ACTGG 2 cut(s) 217, 438
BseBI CCWGG 2 cut(s) 291, 432
BseDI CCNNGG 2 cut(s) 289, 290
BseLI CCNNNNNNNGG 2 cut(s) 124, 426
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 217, 438
BseXI GCAGC 1 cut(s) 242
BseYI CCCAGC 2 cut(s) 12, 425
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 5 cut(s) 5, 321, 412, 430, 435
BsiHKAI GWGCWC 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 124, 426
BsnI GGCC 5 cut(s) 5, 321, 412, 430, 435
Bsp1286I GDGCHC 3 cut(s) 130, 187, 198
Bsp143I GATC 1 cut(s) 273
BspANI GGCC 5 cut(s) 5, 321, 412, 430, 435
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 184, 341, 436
BspQI GCTCTTC 1 cut(s) 23
BsrI ACTGG 2 cut(s) 217, 438
BssECI CCNNGG 2 cut(s) 289, 290
BssMI GATC 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 291, 432
Bst4CI ACNGT 4 cut(s) 193, 245, 329, 361
Bst6I CTCTTC 2 cut(s) 13, 23
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 2 cut(s) 129, 519
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstNI CCWGG 2 cut(s) 291, 432
BstSCI CCNGG 2 cut(s) 289, 430
BstV1I GCAGC 1 cut(s) 242
BsuRI GGCC 5 cut(s) 5, 321, 412, 430, 435
BtsIMutI CAGTG 4 cut(s) 189, 210, 250, 325
Cac8I GCNNGC 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 428, 434
Csp6I GTAC 2 cut(s) 304, 441
CviAII CATG 2 cut(s) 408, 514
CviQI GTAC 2 cut(s) 304, 441
DdeI CTNAG 2 cut(s) 129, 519
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 13, 23
EarI CTCTTC 2 cut(s) 13, 23
Eco24I GRGCYC 2 cut(s) 130, 187
Eco57I CTGAAG 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 289, 430
EcoT38I GRGCYC 2 cut(s) 130, 187
FaeI CATG 2 cut(s) 411, 517
FaiI YATR 5 cut(s) 75, 147, 356, 409, 515
FalI AAGNNNNNCTT 2 cut(s) 463, 495
FatI CATG 2 cut(s) 407, 513
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 231
FriOI GRGCYC 2 cut(s) 130, 187
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 3 cut(s) 38, 402, 414
GluI GCNGC 1 cut(s) 231
GsaI CCCAGC 2 cut(s) 16, 429
HaeIII GGCC 5 cut(s) 5, 321, 412, 430, 435
Hin1II CATG 2 cut(s) 411, 517
HindIII AAGCTT 2 cut(s) 120, 347
HphI GGTGA 2 cut(s) 95, 164
Hpy166II GTNNAC 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 4 cut(s) 193, 245, 329, 361
HpyCH4V TGCA 2 cut(s) 230, 284
HpyF3I CTNAG 2 cut(s) 129, 519
Hsp92II CATG 2 cut(s) 411, 517
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 1 cut(s) 273
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 182, 238
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 1 cut(s) 498
MaeI CTAG 3 cut(s) 38, 402, 414
MaeIII GTNAC 3 cut(s) 83, 152, 490
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 4 cut(s) 10, 363, 369, 438
MhlI GDGCHC 3 cut(s) 130, 187, 198
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 2 cut(s) 42, 106
MluNI TGGCCA 1 cut(s) 321
MmeI TCCRAC 2 cut(s) 77, 445
MnlI CCTC 1 cut(s) 16
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MseI TTAA 3 cut(s) 105, 168, 254
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 425
MspR9I CCNGG 2 cut(s) 291, 432
MvaI CCWGG 2 cut(s) 291, 432
NdeII GATC 1 cut(s) 273
NlaIII CATG 2 cut(s) 411, 517
NlaIV GGNNCC 3 cut(s) 184, 341, 436
NmuCI GTSAC 2 cut(s) 83, 152
PasI CCCWGGG 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 232
PshBI ATTAAT 1 cut(s) 105
PsiI TTATAA 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 289, 430
PspFI CCCAGC 2 cut(s) 12, 425
PspGI CCWGG 2 cut(s) 289, 430
PspN4I GGNNCC 3 cut(s) 184, 341, 436
PspPI GGNCC 2 cut(s) 428, 434
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 305, 442
RsaNI GTAC 2 cut(s) 304, 441
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 105, 168, 254
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 2 cut(s) 428, 434
ScrFI CCNGG 2 cut(s) 291, 432
SduI GDGCHC 3 cut(s) 130, 187, 198
SetI ASST 9 cut(s) 18, 97, 124, 235, 282, 351, 395, 407, 427
SfaNI GCATC 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
Sse9I AATT 2 cut(s) 42, 106
SspMI CTAG 3 cut(s) 38, 402, 414
StyD4I CCNGG 2 cut(s) 289, 430
TaaI ACNGT 4 cut(s) 193, 245, 329, 361
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 42, 106
TatI WGTACW 1 cut(s) 440
Tru1I TTAA 3 cut(s) 105, 168, 254
Tru9I TTAA 3 cut(s) 105, 168, 254
TscAI CASTG 4 cut(s) 196, 217, 250, 332
TseFI GTSAC 2 cut(s) 83, 152
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 2 cut(s) 83, 152
TspDTI ATGAA 3 cut(s) 10, 363, 369
TspRI CASTG 4 cut(s) 196, 217, 250, 332
VspI ATTAAT 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XspI CTAG 3 cut(s) 38, 402, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.