Rroxscaffold_2G00094320

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000318
Physical Location & Seq
Reverse (-)
15624315 .. 15624990
676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094320.1

Sequence Viewer

Length: 570 bp
ATGGCCTATTTCCAGCTCTTCACCATCCTTGCCATATTAGCAATTTTTTCCCCATCAATTTCGGCCAAAAATTATGTTGTTGGGGACGAACAAGGCTGGACCGTTGAAATTGACTATGAAGCTTGGGCTAAGGGAAAGCAATTTTATGTTGGTGACAACCTTATTTTCAAGTATCTACCAGGAGTTCACAATGTGGTTGAAGTGAAGGAAAAAGAGTTTAAGGAATGTGCAGCTCCTTCTAGCACCAAGCCATTAACAACTGGAGAGGATTTGATCAAGCTTGCAACCCCAGGAAAGAAATGGTTCATTTGTAGTGTTGGTAAGCATTGTGAATTGGGGAACCAGAAGGTTGCTGTAACTGTTTTGTCATCACCTTCCTCTTCTCCTAGCTCAATCCCAAGTAGCTCAAGTCCAAATGTTGCCCCAAGTCCGAGTACCTCAAGCCTAACTTCCCCAGGCCCAGCTGCCTCAAGCCAGAGTGAACCAAGCCCGAGTGGACCAAGCCCAAGTACCTCAAGCCTGAGTACCTCTGCGGCAACTGTCGGAAATATATATGTGGGTGGCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

189

Amino Acids

19.81

Weight (kDa)

6.1

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 3e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 533
AcoI YGGCCR 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 3 cut(s) 436, 511, 526
AgsI TTSAA 3 cut(s) 107, 169, 200
AjnI CCWGG 3 cut(s) 178, 289, 454
AluBI AGCT 7 cut(s) 16, 122, 233, 280, 390, 405, 464
AluI AGCT 7 cut(s) 16, 122, 233, 280, 390, 405, 464
Ama87I CYCGRG 1 cut(s) 490
AoxI GGCC 3 cut(s) 3, 63, 457
ApeKI GCWGC 2 cut(s) 230, 464
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 3 cut(s) 99, 458, 497
AsuHPI GGTGA 3 cut(s) 13, 164, 363
AvaI CYCGRG 1 cut(s) 490
AvaII GGWCC 2 cut(s) 99, 497
BbvI GCAGC 2 cut(s) 242, 451
BccI CCATC 2 cut(s) 32, 61
BciT130I CCWGG 3 cut(s) 180, 291, 456
BclI TGATCA 1 cut(s) 273
BfaI CTAG 2 cut(s) 240, 387
BisI GCNGC 3 cut(s) 231, 465, 534
BlsI GCNGC 3 cut(s) 232, 466, 535
Bme1390I CCNGG 3 cut(s) 180, 291, 456
Bme18I GGWCC 2 cut(s) 99, 497
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 3 cut(s) 99, 458, 497
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 3 cut(s) 180, 291, 456
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 4 cut(s) 391, 424, 454, 499
BsaJI CCNNGG 2 cut(s) 289, 454
Bse1I ACTGG 1 cut(s) 265
BseBI CCWGG 3 cut(s) 180, 291, 456
BseDI CCNNGG 2 cut(s) 289, 454
BseGI GGATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 242, 451
BseYI CCCAGC 1 cut(s) 460
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 3 cut(s) 5, 65, 459
BsiHKCI CYCGRG 1 cut(s) 490
BslFI GGGAC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 3 cut(s) 5, 65, 459
BsoBI CYCGRG 1 cut(s) 490
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 1 cut(s) 533
BspANI GGCC 3 cut(s) 5, 65, 459
BspCNI CTCAG 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 341
BspQI GCTCTTC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 289, 454
BssMI GATC 1 cut(s) 273
Bst2UI CCWGG 3 cut(s) 180, 291, 456
Bst4CI ACNGT 3 cut(s) 103, 361, 541
Bst6I CTCTTC 2 cut(s) 23, 385
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 129, 521
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 3 cut(s) 180, 291, 456
BstSCI CCNGG 3 cut(s) 178, 289, 454
BstV1I GCAGC 2 cut(s) 242, 451
BsuRI GGCC 3 cut(s) 5, 65, 459
BtsCI GGATG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 282
Cfr13I GGNCC 3 cut(s) 99, 458, 497
Csp6I GTAC 3 cut(s) 435, 510, 525
CviQI GTAC 3 cut(s) 435, 510, 525
DdeI CTNAG 2 cut(s) 129, 521
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 23, 385
EarI CTCTTC 2 cut(s) 23, 385
Eco47I GGWCC 2 cut(s) 99, 497
Eco88I CYCGRG 1 cut(s) 490
EcoRII CCWGG 3 cut(s) 178, 289, 454
FaiI YATR 7 cut(s) 35, 75, 117, 147, 551, 553, 555
FalI AAGNNNNNCTT 2 cut(s) 433, 465
FaqI GGGAC 1 cut(s) 98
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 231, 465, 534
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 231, 465, 534
FspBI CTAG 2 cut(s) 240, 387
GluI GCNGC 3 cut(s) 231, 465, 534
GsaI CCCAGC 1 cut(s) 464
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 3 cut(s) 5, 65, 459
HindIII AAGCTT 2 cut(s) 120, 278
HphI GGTGA 3 cut(s) 13, 164, 363
Hpy166II GTNNAC 3 cut(s) 187, 482, 497
Hpy188I TCNGA 2 cut(s) 432, 545
Hpy8I GTNNAC 3 cut(s) 187, 482, 497
HpyAV CCTTC 4 cut(s) 199, 246, 340, 384
HpyCH4III ACNGT 3 cut(s) 103, 361, 541
HpyCH4V TGCA 2 cut(s) 230, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 129, 521
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 1 cut(s) 273
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 2 cut(s) 242, 451
MaeI CTAG 2 cut(s) 240, 387
MaeIII GTNAC 2 cut(s) 152, 355
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 10, 372
MluCI AATT 6 cut(s) 42, 57, 70, 108, 140, 332
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 6 cut(s) 259, 388, 448, 478, 523, 538
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 2 cut(s) 219, 254
MspA1I CMGCKG 1 cut(s) 464
MspR9I CCNGG 3 cut(s) 180, 291, 456
MvaI CCWGG 3 cut(s) 180, 291, 456
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 302
PkrI GCNGC 3 cut(s) 232, 466, 535
Psp6I CCWGG 3 cut(s) 178, 289, 454
PspFI CCCAGC 1 cut(s) 460
PspGI CCWGG 3 cut(s) 178, 289, 454
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 3 cut(s) 99, 458, 497
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 3 cut(s) 436, 511, 526
RsaNI GTAC 3 cut(s) 435, 510, 525
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 219, 254
SatI GCNGC 3 cut(s) 231, 465, 534
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 3 cut(s) 99, 458, 497
ScrFI CCNGG 3 cut(s) 180, 291, 456
SinI GGWCC 2 cut(s) 99, 497
SmlI CTYRAG 4 cut(s) 406, 439, 469, 514
SmoI CTYRAG 4 cut(s) 406, 439, 469, 514
Sse9I AATT 6 cut(s) 42, 57, 70, 108, 140, 332
SsiI CCGC 1 cut(s) 533
SspMI CTAG 2 cut(s) 240, 387
StyD4I CCNGG 3 cut(s) 178, 289, 454
TaaI ACNGT 3 cut(s) 103, 361, 541
TasI AATT 6 cut(s) 42, 57, 70, 108, 140, 332
TauI GCSGC 1 cut(s) 536
Tru1I TTAA 2 cut(s) 219, 254
Tru9I TTAA 2 cut(s) 219, 254
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 2 cut(s) 230, 464
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 132, 295
VpaK11BI GGWCC 2 cut(s) 99, 497
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 2 cut(s) 240, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.