RLG00000003734

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000318
Physical Location & Seq
Forward (+)
52180049 .. 52180669
621 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003734

Sequence Viewer

Length: 492 bp
ATGGCCTCTTCCCAGTTCTTCATAATCCCTGCCATTCTAGCAATTGTTACCCCTTCAATTTTGGCCACAGATTTTATTGTTGGTGATGACAAAGGTTGGACCAATACTGTTGACTACCAAGCTTGGGCTCAGGGAAAGCTCTTCTATGTTGGTGATAACCTCGTATTTAACTACCCAAAAGGAGCTCACAATGTGCTTAAGGTGAATGGAACTGGGTTCCAAGAATGTTCAGCTCCTGCAGGCACTGTGGCATTAACAAGTGGACAGGATGTGATAAACCTAGCAACGCCGGGAAGAAAATGGTACATTTGTGGTGTTTCTAAGCACTGTGAAGTTGGACCCCAGAAGCTTTTCATAACTGTTATGCCAGCTTCCTTTGCTCCTAGTCCAAGCCCCAGTACCTCTGCAGCAACTACAAGTGCTTTTAATGGAGCAAGATATGGGTTGATCGTCGTTACTATTGTCACCATTCTGGGGATGCTCATGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

164

Amino Acids

17.21

Weight (kDa)

7.7

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 6.5e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 305, 400
AfiI CCNNNNNNNGG 2 cut(s) 124, 474
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 57
AluBI AGCT 6 cut(s) 122, 139, 185, 233, 349, 371
AluI AGCT 6 cut(s) 122, 139, 185, 233, 349, 371
Alw21I GWGCWC 1 cut(s) 187
AlwNI CAGNNNCTG 2 cut(s) 236, 245
AoxI GGCC 2 cut(s) 3, 63
ApeKI GCWGC 1 cut(s) 407
Asp700I GAANNNNTTC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 99, 338
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 4 cut(s) 95, 164, 214, 457
AvaII GGWCC 2 cut(s) 99, 338
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 2 cut(s) 130, 187
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 419
BcnI CCSGG 1 cut(s) 291
BfaI CTAG 3 cut(s) 38, 281, 384
BfmI CTRYAG 2 cut(s) 237, 405
BfrI CTTAAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 99, 338
BmgT120I GGNCC 2 cut(s) 99, 338
BmiI GGNNCC 2 cut(s) 218, 340
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 3 cut(s) 7, 222, 390
BmsI GCATC 1 cut(s) 468
BmuI ACTGGG 3 cut(s) 7, 222, 390
Bpu10I CCTNAGC 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 474
Bse1I ACTGG 3 cut(s) 13, 217, 396
BseGI GGATG 2 cut(s) 274, 483
BseLI CCNNNNNNNGG 2 cut(s) 124, 474
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 3 cut(s) 13, 217, 396
BseXI GCAGC 1 cut(s) 419
BshFI GGCC 2 cut(s) 5, 65
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 2 cut(s) 124, 474
BsnI GGCC 2 cut(s) 5, 65
Bsp1286I GDGCHC 2 cut(s) 130, 187
Bsp143I GATC 1 cut(s) 447
BspANI GGCC 2 cut(s) 5, 65
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 218, 340
BspMAI CTGCAG 2 cut(s) 241, 409
BspQI GCTCTTC 1 cut(s) 146
BspTI CTTAAG 1 cut(s) 197
BsrI ACTGG 3 cut(s) 13, 217, 396
BssMI GATC 1 cut(s) 447
Bst4CI ACNGT 4 cut(s) 109, 247, 329, 361
Bst6I CTCTTC 2 cut(s) 13, 146
BstAFI CTTAAG 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 241, 369
BstDEI CTNAG 2 cut(s) 129, 321
BstF5I GGATG 2 cut(s) 274, 483
BstKTI GATC 1 cut(s) 450
BstMBI GATC 1 cut(s) 447
BstMWI GCNNNNNNNGC 2 cut(s) 38, 377
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 237, 405
BstV1I GCAGC 1 cut(s) 419
BsuRI GGCC 2 cut(s) 5, 65
BtsCI GGATG 2 cut(s) 274, 483
BtsIMutI CAGTG 2 cut(s) 243, 325
Cac8I GCNNGC 2 cut(s) 241, 369
CaiI CAGNNNCTG 2 cut(s) 236, 245
Cfr13I GGNCC 2 cut(s) 99, 338
Csp6I GTAC 2 cut(s) 304, 399
CviAII CATG 1 cut(s) 484
CviQI GTAC 2 cut(s) 304, 399
DdeI CTNAG 2 cut(s) 129, 321
DpnI GATC 1 cut(s) 449
DpnII GATC 1 cut(s) 447
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 13, 146
EarI CTCTTC 2 cut(s) 13, 146
Ecl136II GAGCTC 1 cut(s) 185
Eco24I GRGCYC 2 cut(s) 130, 187
Eco47I GGWCC 2 cut(s) 99, 338
Eco53kI GAGCTC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 185
EcoT38I GRGCYC 2 cut(s) 130, 187
FaeI CATG 1 cut(s) 487
FaiI YATR 6 cut(s) 23, 147, 356, 365, 441, 485
FatI CATG 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 2 cut(s) 130, 187
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 3 cut(s) 38, 281, 384
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 2 cut(s) 5, 65
HapII CCGG 1 cut(s) 290
Hin1II CATG 1 cut(s) 487
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 120, 347
HpaII CCGG 1 cut(s) 290
HphI GGTGA 4 cut(s) 95, 164, 214, 457
Hpy166II GTNNAC 2 cut(s) 112, 263
Hpy8I GTNNAC 2 cut(s) 112, 263
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 4 cut(s) 109, 247, 329, 361
HpyCH4V TGCA 2 cut(s) 239, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 377
HpyF3I CTNAG 2 cut(s) 129, 321
Hsp92II CATG 1 cut(s) 487
Kzo9I GATC 1 cut(s) 447
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 4 cut(s) 182, 238, 385, 431
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 1 cut(s) 468
MaeI CTAG 3 cut(s) 38, 281, 384
MaeIII GTNAC 3 cut(s) 46, 454, 463
MalI GATC 1 cut(s) 449
MboI GATC 1 cut(s) 447
MboII GAAGA 3 cut(s) 10, 133, 306
MfeI CAATTG 1 cut(s) 42
MhlI GDGCHC 2 cut(s) 130, 187
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 42, 57
MluNI TGGCCA 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 77, 316
MnlI CCTC 3 cut(s) 16, 170, 412
Mox20I TGGCCA 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 350
MscI TGGCCA 1 cut(s) 65
MseI TTAA 5 cut(s) 168, 198, 254, 426, 490
Msp20I TGGCCA 1 cut(s) 65
MspCI CTTAAG 1 cut(s) 197
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 38, 377
NciI CCSGG 1 cut(s) 291
NdeII GATC 1 cut(s) 447
NlaIII CATG 1 cut(s) 487
NlaIV GGNNCC 2 cut(s) 218, 340
NmuCI GTSAC 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 350
PkrI GCNGC 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 218, 340
PspPI GGNCC 2 cut(s) 99, 338
PstI CTGCAG 2 cut(s) 241, 409
PstNI CAGNNNCTG 2 cut(s) 236, 245
RsaI GTAC 2 cut(s) 305, 400
RsaNI GTAC 2 cut(s) 304, 399
SacI GAGCTC 1 cut(s) 187
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 5 cut(s) 168, 198, 254, 426, 490
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 1 cut(s) 447
Sau96I GGNCC 2 cut(s) 99, 338
SbfI CCTGCAGG 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 291
SdaI CCTGCAGG 1 cut(s) 241
SduI GDGCHC 2 cut(s) 130, 187
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 2 cut(s) 237, 405
SinI GGWCC 2 cut(s) 99, 338
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse8387I CCTGCAGG 1 cut(s) 241
Sse9I AATT 2 cut(s) 42, 57
SspMI CTAG 3 cut(s) 38, 281, 384
SstI GAGCTC 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 4 cut(s) 109, 247, 329, 361
TasI AATT 2 cut(s) 42, 57
Tru1I TTAA 5 cut(s) 168, 198, 254, 426, 490
Tru9I TTAA 5 cut(s) 168, 198, 254, 426, 490
TscAI CASTG 2 cut(s) 250, 332
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 2 cut(s) 10, 343
TspRI CASTG 2 cut(s) 250, 332
Vha464I CTTAAG 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 99, 338
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 3 cut(s) 38, 281, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.