Rorug07G0059700

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000318
Physical Location & Seq
Reverse (-)
4276111 .. 4276770
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0059700.1

Sequence Viewer

Length: 228 bp
ATGTTGAATTGCTTAGACTCTGCAGCTGCAGGGTTTATCATAACGGACCACTTTGGAAAACCAGTTCTTGCCACCGCAATTAAGGCTGGTGCAACTACTGTTCTGATGGCGGAAGCAATTGCCTTGCGTAACAGTATTGCTACTGCTCGGGAAAGAGGTTTCAACAATATTGTAGAAGTGGAAGGGGACTCCAAATTAGTCATCGATGCTGTCAATAGAGTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

75

Amino Acids

7.87

Weight (kDa)

5.64

Isoelectric Point (pI)

22.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 73 3.9e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 75, 110
AgsI TTSAA 2 cut(s) 7, 163
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 23, 26
AspS9I GGNCC 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 13, 35
BccI CCATC 1 cut(s) 100
BfmI CTRYAG 2 cut(s) 21, 27
BisI GCNGC 2 cut(s) 24, 27
BlsI GCNGC 2 cut(s) 25, 28
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 46
BmsI GCATC 1 cut(s) 196
Bsa29I ATCGAT 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 62
BseCI ATCGAT 1 cut(s) 204
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 13, 35
BshVI ATCGAT 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 147
BspACI CCGC 2 cut(s) 75, 110
BspDI ATCGAT 1 cut(s) 204
BspMAI CTGCAG 2 cut(s) 25, 31
BsrI ACTGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 100, 134
BstDEI CTNAG 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSFI CTRYAG 2 cut(s) 21, 27
BstV1I GCAGC 2 cut(s) 13, 35
Bsu15I ATCGAT 1 cut(s) 204
BsuTUI ATCGAT 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 46
ClaI ATCGAT 1 cut(s) 204
CviJI RGCY 2 cut(s) 26, 86
CviKI_1 RGCY 2 cut(s) 26, 86
DdeI CTNAG 1 cut(s) 13
EciI GGCGGA 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 147
FaiI YATR 1 cut(s) 41
FaqI GGGAC 1 cut(s) 200
Fnu4HI GCNGC 2 cut(s) 24, 27
Fsp4HI GCNGC 2 cut(s) 24, 27
GluI GCNGC 2 cut(s) 24, 27
HinfI GANTC 3 cut(s) 17, 188, 219
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 2 cut(s) 100, 134
HpyCH4V TGCA 3 cut(s) 23, 29, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 13
LpnPI CCDG 3 cut(s) 15, 72, 75
Lsp1109I GCAGC 2 cut(s) 13, 35
LweI GCATC 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 128
MfeI CAATTG 1 cut(s) 117
MluCI AATT 4 cut(s) 7, 78, 117, 194
MlyI GAGTC 3 cut(s) 11, 182, 228
MnlI CCTC 1 cut(s) 149
MseI TTAA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 26
MunI CAATTG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 25, 28
PleI GAGTC 3 cut(s) 11, 182, 227
PpsI GAGTC 3 cut(s) 11, 182, 227
PspPI GGNCC 1 cut(s) 46
PstI CTGCAG 2 cut(s) 25, 31
PvuII CAGCTG 1 cut(s) 26
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 24, 27
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 3 cut(s) 11, 182, 228
SetI ASST 2 cut(s) 28, 160
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 2 cut(s) 21, 27
SgeI CNNG 7 cut(s) 42, 74, 80, 99, 136, 159, 161
SinI GGWCC 1 cut(s) 46
Sse9I AATT 4 cut(s) 7, 78, 117, 194
SsiI CCGC 2 cut(s) 75, 110
SspI AATATT 1 cut(s) 169
TaaI ACNGT 2 cut(s) 100, 134
TaqI TCGA 1 cut(s) 204
TasI AATT 4 cut(s) 7, 78, 117, 194
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 2 cut(s) 23, 26
TspGWI ACGGA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.