Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004094.1

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

183938 .. 184498

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004094.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggccaccgaggagtccaacgagcaaccgccaccgtcgccggcaccgcctaatccggctccgtccctccctgagtacccgaagatgattatggcggcgattgaggcgcttaatgagagcgaggggtcgaacaagacctcaatcgcgcagcaaatcgagtccacctacggcgatctgcagccggctcacgccacgcttctggcgcaccacctcaacaagatgaagcagagcggcgagctcgttttcgtcaagaacaactacatgaagcccgaccccaacgcgccgcccaagcccaaggtcccggcgccggaaggagccgccgtggtctcctcgcctccgaggccacgtggcagacctcccaagcctagggatccgtttttcccgctcccaattgccaagagctcgacatccaccgggtccggcaggccacgtggccgccctccgaagaaggccaagacaagtccgacctcgactccggcttcggctccggcgagtggtgcccctagaggtagaggcaggccaccgaaagtcaagccctccgtagctccggtgggttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

186

Amino Acids

19.49

Weight (kDa)

10.09

Isoelectric Point (pI)

77.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	43, 304, 497
AccBSI	CCGCTC	2 cut(s)	231, 385
AccII	CGCG	2 cut(s)	146, 281
AciI	CCGC	8 cut(s)	29, 47, 95, 231, 284, 318, 383, 436
AclWI	GGATC	2 cut(s)	365, 378
AcoI	YGGCCR	2 cut(s)	3, 433
AcvI	CACGTG	2 cut(s)	347, 431
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	3 cut(s)	307, 366, 494
AluBI	AGCT	3 cut(s)	238, 402, 545
AluI	AGCT	3 cut(s)	238, 402, 545
Alw21I	GWGCWC	2 cut(s)	240, 404
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	2 cut(s)	365, 378
AoxI	GGCC	6 cut(s)	3, 341, 425, 433, 450, 518
ApeKI	GCWGC	2 cut(s)	148, 178
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
AspA2I	CCTAGG	1 cut(s)	365
AspLEI	GCGC	5 cut(s)	109, 148, 205, 283, 307
AspS9I	GGNCC	2 cut(s)	298, 417
AsuC2I	CCSGG	2 cut(s)	302, 415
AvaII	GGWCC	2 cut(s)	298, 417
AvrII	CCTAGG	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	3 cut(s)	43, 304, 497
BanII	GRGCYC	2 cut(s)	240, 404
BbrPI	CACGTG	2 cut(s)	347, 431
Bbv12I	GWGCWC	2 cut(s)	240, 404
BbvI	GCAGC	2 cut(s)	160, 190
BceAI	ACGGC	2 cut(s)	184, 305
BcnI	CCSGG	2 cut(s)	302, 415
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	2 cut(s)	366, 504
BfmI	CTRYAG	1 cut(s)	176
BfoI	RGCGCY	2 cut(s)	110, 308
BglI	GCCNNNNNGGC	1 cut(s)	340
BisI	GCNGC	7 cut(s)	96, 149, 179, 232, 284, 318, 436
BlnI	CCTAGG	1 cut(s)	365
BlsI	GCNGC	7 cut(s)	97, 150, 180, 233, 285, 319, 437
Bme1390I	CCNGG	2 cut(s)	302, 415
Bme18I	GGWCC	2 cut(s)	298, 417
BmgT120I	GGNCC	2 cut(s)	298, 417
BmiI	GGNNCC	9 cut(s)	45, 60, 300, 306, 316, 372, 418, 486, 499
BmrFI	CCNGG	2 cut(s)	302, 415
BpuMI	CCSGG	2 cut(s)	302, 415
BsaAI	YACGTR	2 cut(s)	347, 431
BsaHI	GRCGYC	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	5 cut(s)	9, 294, 321, 338, 365
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	4 cut(s)	306, 336, 457, 487
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 366, 494
Bse118I	RCCGGY	2 cut(s)	40, 181
BseDI	CCNNGG	5 cut(s)	9, 294, 321, 338, 365
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	3 cut(s)	307, 366, 494
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	26, 319
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	2 cut(s)	160, 190
Bsh1236I	CGCG	2 cut(s)	146, 281
BshFI	GGCC	6 cut(s)	5, 343, 427, 435, 452, 520
BshNI	GGYRCC	3 cut(s)	43, 304, 497
BsiHKAI	GWGCWC	2 cut(s)	240, 404
BslFI	GGGAC	2 cut(s)	49, 284
BslI	CCNNNNNNNGG	3 cut(s)	307, 366, 494
BsmAI	GTCTC	1 cut(s)	331
BsmFI	GGGAC	2 cut(s)	49, 284
BsnI	GGCC	6 cut(s)	5, 343, 427, 435, 452, 520
Bso31I	GGTCTC	1 cut(s)	331
Bsp1286I	GDGCHC	3 cut(s)	240, 404, 502
Bsp143I	GATC	2 cut(s)	172, 370
BspACI	CCGC	8 cut(s)	29, 47, 95, 231, 284, 318, 383, 436
BspANI	GGCC	6 cut(s)	5, 343, 427, 435, 452, 520
BspCNI	CTCAG	1 cut(s)	64
BspFNI	CGCG	2 cut(s)	146, 281
BspLI	GGNNCC	9 cut(s)	45, 60, 300, 306, 316, 372, 418, 486, 499
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	2 cut(s)	365, 378
BspT107I	GGYRCC	3 cut(s)	43, 304, 497
BspTNI	GGTCTC	1 cut(s)	331
BsrBI	CCGCTC	2 cut(s)	231, 385
BsrFI	RCCGGY	2 cut(s)	40, 181
BssAI	RCCGGY	2 cut(s)	40, 181
BssECI	CCNNGG	5 cut(s)	9, 294, 321, 338, 365
BssMI	GATC	2 cut(s)	172, 370
BssNI	GRCGYC	1 cut(s)	305
BssT1I	CCWWGG	2 cut(s)	294, 365
Bst4CI	ACNGT	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	305
BstBAI	YACGTR	2 cut(s)	347, 431
BstC8I	GCNNGC	5 cut(s)	42, 183, 236, 425, 518
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	407
BstFNI	CGCG	2 cut(s)	146, 281
BstH2I	RGCGCY	2 cut(s)	110, 308
BstHHI	GCGC	5 cut(s)	109, 148, 205, 283, 307
BstKTI	GATC	2 cut(s)	175, 373
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	2 cut(s)	172, 370
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 46, 104, 202, 289, 340, 497
BstSCI	CCNGG	2 cut(s)	300, 413
BstSFI	CTRYAG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	502
BstUI	CGCG	2 cut(s)	146, 281
BstV1I	GCAGC	2 cut(s)	160, 190
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	6 cut(s)	5, 343, 427, 435, 452, 520
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	407
Cac8I	GCNNGC	5 cut(s)	42, 183, 236, 425, 518
CfoI	GCGC	5 cut(s)	109, 148, 205, 283, 307
Cfr10I	RCCGGY	2 cut(s)	40, 181
Cfr13I	GGNCC	2 cut(s)	298, 417
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	1 cut(s)	262
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	72
DinI	GGCGCC	1 cut(s)	306
DpnI	GATC	2 cut(s)	174, 372
DpnII	GATC	2 cut(s)	172, 370
EaeI	YGGCCR	2 cut(s)	3, 433
Ecl136II	GAGCTC	2 cut(s)	238, 402
Eco130I	CCWWGG	2 cut(s)	294, 365
Eco24I	GRGCYC	2 cut(s)	240, 404
Eco31I	GGTCTC	1 cut(s)	331
Eco47I	GGWCC	2 cut(s)	298, 417
Eco53kI	GAGCTC	2 cut(s)	238, 402
Eco72I	CACGTG	2 cut(s)	347, 431
EcoICRI	GAGCTC	2 cut(s)	238, 402
EcoO109I	RGGNCCY	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	294, 365
EcoT38I	GRGCYC	2 cut(s)	240, 404
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
ErhI	CCWWGG	2 cut(s)	294, 365
FaeI	CATG	1 cut(s)	265
FaiI	YATR	2 cut(s)	92, 263
FaqI	GGGAC	2 cut(s)	49, 284
FatI	CATG	1 cut(s)	261
FauI	CCCGC	1 cut(s)	390
Fnu4HI	GCNGC	7 cut(s)	96, 149, 179, 232, 284, 318, 436
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	2 cut(s)	240, 404
Fsp4HI	GCNGC	7 cut(s)	96, 149, 179, 232, 284, 318, 436
FspBI	CTAG	2 cut(s)	366, 504
GlaI	GCGC	5 cut(s)	108, 147, 204, 282, 306
GluI	GCNGC	7 cut(s)	96, 149, 179, 232, 284, 318, 436
HaeII	RGCGCY	2 cut(s)	110, 308
HaeIII	GGCC	6 cut(s)	5, 343, 427, 435, 452, 520
HhaI	GCGC	5 cut(s)	109, 148, 205, 283, 307
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	5 cut(s)	107, 146, 203, 281, 305
HinP1I	GCGC	5 cut(s)	107, 146, 203, 281, 305
HinfI	GANTC	3 cut(s)	14, 158, 472
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	3 cut(s)	339, 444, 465
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	305, 442
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	2 cut(s)	346, 430
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 46, 104, 202, 289, 340, 497
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	2 cut(s)	346, 430
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	5 cut(s)	107, 146, 203, 281, 305
KasI	GGCGCC	1 cut(s)	304
KroI	GCCGGC	2 cut(s)	40, 181
KroNI	GCCGGC	2 cut(s)	42, 183
Kzo9I	GATC	2 cut(s)	172, 370
LmnI	GCTCC	5 cut(s)	64, 314, 390, 490, 550
Lsp1109I	GCAGC	2 cut(s)	160, 190
MaeI	CTAG	2 cut(s)	366, 504
MaeII	ACGT	2 cut(s)	346, 430
MalI	GATC	2 cut(s)	174, 372
MbiI	CCGCTC	2 cut(s)	231, 385
MboI	GATC	2 cut(s)	172, 370
MboII	GAAGA	2 cut(s)	94, 457
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	3 cut(s)	240, 404, 502
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	390
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	305
MlyI	GAGTC	3 cut(s)	23, 167, 466
MmeI	TCCRAC	2 cut(s)	42, 488
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	2 cut(s)	40, 181
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	302, 415
MunI	CAATTG	1 cut(s)	390
MvnI	CGCG	2 cut(s)	146, 281
MwoI	GCNNNNNNNGC	7 cut(s)	37, 46, 104, 202, 289, 340, 497
NaeI	GCCGGC	2 cut(s)	42, 183
NarI	GGCGCC	1 cut(s)	305
NciI	CCSGG	2 cut(s)	302, 415
NdeII	GATC	2 cut(s)	172, 370
NgoMIV	GCCGGC	2 cut(s)	40, 181
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	9 cut(s)	45, 60, 300, 306, 316, 372, 418, 486, 499
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PdiI	GCCGGC	2 cut(s)	42, 183
PkrI	GCNGC	7 cut(s)	97, 150, 180, 233, 285, 319, 437
PleI	GAGTC	3 cut(s)	22, 166, 466
PluTI	GGCGCC	1 cut(s)	308
PmaCI	CACGTG	2 cut(s)	347, 431
PmlI	CACGTG	2 cut(s)	347, 431
PpsI	GAGTC	3 cut(s)	22, 166, 466
Ppu21I	YACGTR	2 cut(s)	347, 431
PpuMI	RGGWCCY	1 cut(s)	298
Psp124BI	GAGCTC	2 cut(s)	240, 404
Psp5II	RGGWCCY	1 cut(s)	298
PspCI	CACGTG	2 cut(s)	347, 431
PspN4I	GGNNCC	9 cut(s)	45, 60, 300, 306, 316, 372, 418, 486, 499
PspPI	GGNCC	2 cut(s)	298, 417
PspPPI	RGGWCCY	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SacI	GAGCTC	2 cut(s)	240, 404
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	7 cut(s)	96, 149, 179, 232, 284, 318, 436
Sau3AI	GATC	2 cut(s)	172, 370
Sau96I	GGNCC	2 cut(s)	298, 417
SchI	GAGTC	3 cut(s)	23, 167, 466
ScrFI	CCNGG	2 cut(s)	302, 415
SduI	GDGCHC	3 cut(s)	240, 404, 502
SfcI	CTRYAG	1 cut(s)	176
SfoI	GGCGCC	1 cut(s)	306
SinI	GGWCC	2 cut(s)	298, 417
Sse9I	AATT	1 cut(s)	390
SsiI	CCGC	8 cut(s)	29, 47, 95, 231, 284, 318, 383, 436
SspDI	GGCGCC	1 cut(s)	304
SspMI	CTAG	2 cut(s)	366, 504
SstI	GAGCTC	2 cut(s)	240, 404
StyD4I	CCNGG	2 cut(s)	300, 413
StyI	CCWWGG	2 cut(s)	294, 365
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	2 cut(s)	349, 433
TaqI	TCGA	4 cut(s)	128, 156, 404, 470
TasI	AATT	1 cut(s)	390
TauI	GCSGC	5 cut(s)	98, 234, 286, 320, 438
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	2 cut(s)	148, 178
TspDTI	ATGAA	2 cut(s)	236, 278
TspGWI	ACGGA	3 cut(s)	51, 363, 529
VpaK11BI	GGWCC	2 cut(s)	298, 417
XmaJI	CCTAGG	1 cut(s)	365
XspI	CTAG	2 cut(s)	366, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.