Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Forward (+)

3815525 .. 3815863

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGCCTGACCCCAACGCGCCGCCTAAGCACGGCCGTGGCCGTCCTCCCAAGCCGAAGGTCCCGAGGGCTGAAGGAGCTGCTGCCATGGTTTCCTCGCCTCTGAGGCCACATGGCAGGCCTCCCAAGGCTAAGGATCTGTTTTTCCCGACTCCGATTGTCCAGAGCTCGACCTCGGGAGGAGGGTCAGGCAGGCCACGTGGCCGTCCTTTGAAGAAGGCCAAGACTGCTCCGGCTAACGCTCCTGCTGCTCTGACGAGTGGTGGTGGTAGTGGTGCTCCTAGAGGGAGAGGCAGGCCACCGAAAGTGAAGCCCTCCGTGGCTCCGGTGGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

113

Amino Acids

11.29

Weight (kDa)

12.0

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	144
AcoI	YGGCCR	3 cut(s)	34, 40, 202
AcuI	CTGAAG	1 cut(s)	93
AcvI	CACGTG	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	214
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	2 cut(s)	80, 168
AluI	AGCT	2 cut(s)	80, 168
Alw21I	GWGCWC	2 cut(s)	170, 280
AlwI	GGATC	1 cut(s)	144
Ama87I	CYCGRG	2 cut(s)	64, 175
AoxI	GGCC	8 cut(s)	34, 40, 107, 119, 194, 202, 219, 296
ApeKI	GCWGC	3 cut(s)	80, 83, 248
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	61
AvaI	CYCGRG	2 cut(s)	64, 175
AvaII	GGWCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	170
BbrPI	CACGTG	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	170, 280
BbvI	GCAGC	3 cut(s)	67, 70, 235
BceAI	ACGGC	4 cut(s)	21, 27, 49, 189
BfaI	CTAG	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	4 cut(s)	23, 81, 84, 249
BlsI	GCNGC	4 cut(s)	24, 82, 85, 250
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	2 cut(s)	64, 175
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	63, 324
Bpu10I	CCTNAGC	2 cut(s)	27, 132
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	6 cut(s)	37, 65, 87, 126, 174, 318
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseDI	CCNNGG	6 cut(s)	37, 65, 87, 126, 174, 318
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	195
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	67, 70, 235
Bsh1236I	CGCG	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	8 cut(s)	36, 42, 109, 121, 196, 204, 221, 298
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	170, 280
BsiHKCI	CYCGRG	2 cut(s)	64, 175
BsiSI	CCGG	2 cut(s)	233, 326
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	8 cut(s)	36, 42, 109, 121, 196, 204, 221, 298
BsoBI	CYCGRG	2 cut(s)	64, 175
Bsp1286I	GDGCHC	2 cut(s)	170, 280
Bsp143I	GATC	1 cut(s)	136
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	8 cut(s)	36, 42, 109, 121, 196, 204, 221, 298
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	63, 324
BspPI	GGATC	1 cut(s)	144
BssECI	CCNNGG	6 cut(s)	37, 65, 87, 126, 174, 318
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	2 cut(s)	87, 126
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	119, 194, 296
BstDEI	CTNAG	3 cut(s)	27, 104, 132
BstDSI	CCRYGG	3 cut(s)	37, 87, 318
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 77, 106, 227, 248
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	67, 70, 235
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BstZI	CGGCCG	1 cut(s)	34
BsuRI	GGCC	8 cut(s)	36, 42, 109, 121, 196, 204, 221, 298
BtgI	CCRYGG	3 cut(s)	37, 87, 318
Cac8I	GCNNGC	3 cut(s)	119, 194, 296
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	61
CviAII	CATG	2 cut(s)	88, 113
DdeI	CTNAG	3 cut(s)	27, 104, 132
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
EaeI	YGGCCR	3 cut(s)	34, 40, 202
EagI	CGGCCG	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	168
EclXI	CGGCCG	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	87, 126
Eco147I	AGGCCT	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	93
Eco72I	CACGTG	1 cut(s)	200
Eco88I	CYCGRG	2 cut(s)	64, 175
EcoICRI	GAGCTC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	87, 126
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	87, 126
FaeI	CATG	2 cut(s)	91, 116
FaiI	YATR	2 cut(s)	89, 114
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	87, 112
Fnu4HI	GCNGC	4 cut(s)	23, 81, 84, 249
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	4 cut(s)	23, 81, 84, 249
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	4 cut(s)	23, 81, 84, 249
HaeIII	GGCC	8 cut(s)	36, 42, 109, 121, 196, 204, 221, 298
HapII	CCGG	2 cut(s)	233, 326
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	91, 116
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	233, 326
Hpy188I	TCNGA	3 cut(s)	105, 156, 255
Hpy188III	TCNNGA	4 cut(s)	64, 148, 163, 177
HpyAV	CCTTC	3 cut(s)	52, 68, 211
HpyCH4IV	ACGT	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 77, 106, 227, 248
HpyF3I	CTNAG	3 cut(s)	27, 104, 132
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	2 cut(s)	91, 116
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	5 cut(s)	77, 235, 247, 283, 328
LpnPI	CCDG	8 cut(s)	21, 103, 174, 176, 178, 246, 258, 280
Lsp1109I	GCAGC	3 cut(s)	67, 70, 235
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	199
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	226
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	2 cut(s)	170, 280
MlyI	GAGTC	1 cut(s)	145
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	2 cut(s)	233, 326
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	5 cut(s)	28, 77, 106, 227, 248
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	2 cut(s)	91, 116
NlaIV	GGNNCC	2 cut(s)	63, 324
OliI	CACNNNNGTG	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	24, 82, 85, 250
PleI	GAGTC	1 cut(s)	145
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	61
PspCI	CACGTG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	63, 324
PspPI	GGNCC	1 cut(s)	61
PspPPI	RGGWCCY	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	170
SatI	GCNGC	4 cut(s)	23, 81, 84, 249
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	2 cut(s)	170, 280
SetI	ASST	5 cut(s)	63, 82, 170, 176, 202
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	36
SseBI	AGGCCT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	121
StyI	CCWWGG	2 cut(s)	87, 126
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	170
TauI	GCSGC	1 cut(s)	25
TseI	GCWGC	3 cut(s)	80, 83, 248
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	61
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.