Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009488.1

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

10650 .. 11749

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009488.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggcgactgaagaggtcaagaaaccgccgtccctccctccttaccctgagatgattctgaaggccatcgaagggttgaatgagaagaatggctcaaacaagtcgtcaatatcaagattcatcgaatcaacttatggggaattgccagccggacactctggactcctgtctaatcacctcagcaaaatgaaagatagcggtgagttggtgttctggaaaaacaactacacaaagccggacccaaatgccccaccgagacggggacgtgggaggccaccaaaacccagggatccagatcagccacaggttgctaacttgccatcaggaaggggcaggggacgcccacctaaggaccctgatgcacccccaagacctcccaaggtcaaggcatcttcagggagcgggaaacctagaggacgaccgaggaagatggctcggcctactggaggtttaactggctcgacaaccataacagatgcagtgactgggaggccaaggggtagacctccaaaggtgaaggattcattgaatgaattgagcattcagcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0080050 GO:0097159 GO:1901363 GO:2000014 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

183

Amino Acids

19.81

Weight (kDa)

10.53

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	402
AccI	GTMKAC	1 cut(s)	502
AciI	CCGC	3 cut(s)	26, 198, 402
AclWI	GGATC	2 cut(s)	284, 297
AcuI	CTGAAG	3 cut(s)	30, 80, 378
AcyI	GRCGYC	1 cut(s)	340
AfiI	CCNNNNNNNGG	4 cut(s)	72, 260, 349, 446
AgsI	TTSAA	2 cut(s)	79, 529
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	2 cut(s)	284, 297
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	4 cut(s)	63, 272, 437, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspS9I	GGNCC	2 cut(s)	238, 352
AsuHPI	GGTGA	3 cut(s)	167, 212, 526
AvaII	GGWCC	2 cut(s)	238, 352
AxyI	CCTNAGG	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	289
BbvCI	CCTCAGC	1 cut(s)	179
BccI	CCATC	3 cut(s)	74, 328, 424
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	2 cut(s)	238, 352
BmgBI	CACGTC	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	238, 352
BmiI	GGNNCC	3 cut(s)	240, 291, 354
BmrFI	CCNGG	1 cut(s)	286
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	3 cut(s)	349, 398, 466
BmuI	ACTGGG	1 cut(s)	495
BoxI	GACNNNNGTC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	340
BsaJI	CCNNGG	5 cut(s)	284, 285, 378, 422, 494
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 260, 349, 446
Bse1I	ACTGG	3 cut(s)	448, 460, 490
Bse21I	CCTNAGG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	5 cut(s)	284, 285, 378, 422, 494
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	4 cut(s)	72, 260, 349, 446
BseMII	CTCAG	2 cut(s)	39, 193
BseNI	ACTGG	3 cut(s)	448, 460, 490
Bsh1285I	CGRYCG	1 cut(s)	422
BshFI	GGCC	4 cut(s)	65, 274, 439, 493
BsiEI	CGRYCG	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	150, 236
BslFI	GGGAC	3 cut(s)	16, 276, 351
BslI	CCNNNNNNNGG	4 cut(s)	72, 260, 349, 446
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	3 cut(s)	16, 276, 351
BsmI	GAATGC	1 cut(s)	540
BsnI	GGCC	4 cut(s)	65, 274, 439, 493
Bsp143I	GATC	2 cut(s)	289, 295
BspACI	CCGC	3 cut(s)	26, 198, 402
BspANI	GGCC	4 cut(s)	65, 274, 439, 493
BspCNI	CTCAG	2 cut(s)	40, 192
BspLI	GGNNCC	3 cut(s)	240, 291, 354
BspPI	GGATC	2 cut(s)	284, 297
BsrBI	CCGCTC	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	448, 460, 490
BssECI	CCNNGG	5 cut(s)	284, 285, 378, 422, 494
BssMI	GATC	2 cut(s)	289, 295
BssNI	GRCGYC	1 cut(s)	340
BssT1I	CCWWGG	2 cut(s)	378, 494
Bst2UI	CCWGG	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	48, 179, 348
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstKTI	GATC	2 cut(s)	292, 298
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	2 cut(s)	289, 295
BstMCI	CGRYCG	1 cut(s)	422
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	286
BstPAI	GACNNNNGTC	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	4 cut(s)	65, 274, 439, 493
BtrI	CACGTC	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	238, 352
CseI	GACGC	1 cut(s)	348
DdeI	CTNAG	3 cut(s)	48, 179, 348
DpnI	GATC	2 cut(s)	291, 297
DpnII	GATC	2 cut(s)	289, 295
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	378, 494
Eco47I	GGWCC	2 cut(s)	238, 352
Eco57I	CTGAAG	3 cut(s)	30, 80, 378
Eco81I	CCTNAGG	1 cut(s)	348
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	378, 494
ErhI	CCWWGG	2 cut(s)	378, 494
Esp3I	CGTCTC	1 cut(s)	250
FaiI	YATR	2 cut(s)	135, 470
FaqI	GGGAC	3 cut(s)	16, 276, 351
FauI	CCCGC	1 cut(s)	395
FblI	GTMKAC	1 cut(s)	502
FspBI	CTAG	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	4 cut(s)	65, 274, 439, 493
HapII	CCGG	2 cut(s)	150, 236
HgaI	GACGC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	340
HinfI	GANTC	5 cut(s)	55, 117, 125, 162, 521
HpaII	CCGG	2 cut(s)	150, 236
HphI	GGTGA	3 cut(s)	167, 212, 526
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	6 cut(s)	19, 114, 159, 214, 293, 324
Hpy8I	GTNNAC	1 cut(s)	503
HpyAV	CCTTC	4 cut(s)	55, 65, 321, 511
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	362, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	3 cut(s)	48, 179, 348
HpySE526I	ACGT	1 cut(s)	265
Hsp92I	GRCGYC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	289, 295
LmnI	GCTCC	1 cut(s)	399
LweI	GCATC	3 cut(s)	349, 398, 466
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	291, 297
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	2 cut(s)	289, 295
MboII	GAAGA	4 cut(s)	23, 97, 384, 439
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	2 cut(s)	140, 533
MlyI	GAGTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	452
MspI	CCGG	2 cut(s)	150, 236
MspR9I	CCNGG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	339
NdeII	GATC	2 cut(s)	289, 295
NlaIV	GGNNCC	3 cut(s)	240, 291, 354
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	481
PasI	CCCWGGG	1 cut(s)	285
PctI	GAATGC	1 cut(s)	540
PfeI	GAWTC	4 cut(s)	55, 117, 125, 521
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	352
PshAI	GACNNNNGTC	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	3 cut(s)	240, 291, 354
PspPI	GGNCC	2 cut(s)	238, 352
PspPPI	RGGWCCY	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	452
Sau3AI	GATC	2 cut(s)	289, 295
Sau96I	GGNCC	2 cut(s)	238, 352
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	286
SfaNI	GCATC	3 cut(s)	349, 398, 466
SinI	GGWCC	2 cut(s)	238, 352
Sse9I	AATT	2 cut(s)	140, 533
SsiI	CCGC	3 cut(s)	26, 198, 402
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	2 cut(s)	378, 494
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	3 cut(s)	69, 123, 461
TaqII	GACCGA	1 cut(s)	436
TasI	AATT	2 cut(s)	140, 533
TfiI	GAWTC	4 cut(s)	55, 117, 125, 521
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	1 cut(s)	486
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	4 cut(s)	109, 203, 513, 546
TspRI	CASTG	1 cut(s)	486
VpaK11BI	GGWCC	2 cut(s)	238, 352
XagI	CCTNNNNNAGG	1 cut(s)	444
XmiI	GTMKAC	1 cut(s)	502
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.