Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00778

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Forward (+)

12271 .. 12720

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ACCTCAATCGCGCAGCAAATCGAGTCCACCTACGGCGATCTGCCGCCGGCTCAGAAGATGGTGCTGGCGCACCACCTCAACAAGATGAAGCAGAGCGGCGAGCTCGTTTTCGTCAAGAACAACTACATGAAGCCCGACCCCAACGCGCCGCCCAAGCGGGGCCGTGGCCGCCCGCCCAAGCCCAAGGTCCCGGCGCCGGAAGGAGCCGCCGTGATCTCCTCGCCTCCGAGGCCACGTGGCAGACCTCCCAAGCCTAGGGATCCGTTTTTCCCGCTCCCAATTGCCAAGAGCTCGACATCCACCGGGTCCGGCAGGCCACGTGGCCGCCCTCCGAAGAAGGCCAAGACAAGTCCGACCTCGACTCCGGCTTTGGCTCCGGCGAGTGGTGCCCCTAGAGGTAGAGGCAGGCCACCGAAAGTCAAGCCCTCCGTAGCTCCGGTGGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

149

Amino Acids

15.72

Weight (kDa)

11.56

Isoelectric Point (pI)

64.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	193, 386
AccBSI	CCGCTC	2 cut(s)	96, 274
AccII	CGCG	2 cut(s)	11, 146
AciI	CCGC	9 cut(s)	44, 96, 149, 157, 169, 173, 207, 272, 325
AclWI	GGATC	2 cut(s)	254, 267
AcoI	YGGCCR	2 cut(s)	166, 322
AcvI	CACGTG	2 cut(s)	236, 320
AcyI	GRCGYC	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	158, 196, 255, 383
AluBI	AGCT	3 cut(s)	103, 291, 434
AluI	AGCT	3 cut(s)	103, 291, 434
Alw21I	GWGCWC	2 cut(s)	105, 293
AlwI	GGATC	2 cut(s)	254, 267
AoxI	GGCC	7 cut(s)	160, 166, 230, 314, 322, 339, 407
ApeKI	GCWGC	1 cut(s)	13
ArsI	GACNNNNNNTTYG	2 cut(s)	352, 384
AspA2I	CCTAGG	1 cut(s)	254
AspLEI	GCGC	4 cut(s)	13, 70, 148, 196
AspS9I	GGNCC	3 cut(s)	160, 187, 306
AsuC2I	CCSGG	2 cut(s)	191, 304
AvaII	GGWCC	2 cut(s)	187, 306
AvrII	CCTAGG	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	391
BamHI	GGATCC	1 cut(s)	259
BanI	GGYRCC	2 cut(s)	193, 386
BanII	GRGCYC	2 cut(s)	105, 293
BbrPI	CACGTG	2 cut(s)	236, 320
Bbv12I	GWGCWC	2 cut(s)	105, 293
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	3 cut(s)	49, 147, 194
BcnI	CCSGG	2 cut(s)	191, 304
BfaI	CTAG	2 cut(s)	255, 393
BfoI	RGCGCY	1 cut(s)	197
BglI	GCCNNNNNGGC	1 cut(s)	229
BisI	GCNGC	7 cut(s)	14, 44, 97, 149, 169, 207, 325
BlnI	CCTAGG	1 cut(s)	254
BlsI	GCNGC	7 cut(s)	15, 45, 98, 150, 170, 208, 326
Bme1390I	CCNGG	2 cut(s)	191, 304
Bme18I	GGWCC	2 cut(s)	187, 306
BmgT120I	GGNCC	3 cut(s)	160, 187, 306
BmiI	GGNNCC	8 cut(s)	161, 189, 195, 205, 261, 307, 375, 388
BmrFI	CCNGG	2 cut(s)	191, 304
BpuMI	CCSGG	2 cut(s)	191, 304
BsaAI	YACGTR	2 cut(s)	236, 320
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	163, 183, 227, 254
BsaWI	WCCGGW	1 cut(s)	436
BsaXI	ACNNNNNCTCC	4 cut(s)	195, 225, 346, 376
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 196, 255, 383
Bse118I	RCCGGY	1 cut(s)	46
BseDI	CCNNGG	4 cut(s)	163, 183, 227, 254
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	4 cut(s)	158, 196, 255, 383
BseMII	CTCAG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	11, 146
BshFI	GGCC	7 cut(s)	162, 168, 232, 316, 324, 341, 409
BshNI	GGYRCC	2 cut(s)	193, 386
BsiHKAI	GWGCWC	2 cut(s)	105, 293
BsiSI	CCGG	8 cut(s)	47, 191, 197, 303, 309, 365, 377, 437
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	4 cut(s)	158, 196, 255, 383
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	7 cut(s)	162, 168, 232, 316, 324, 341, 409
Bsp1286I	GDGCHC	3 cut(s)	105, 293, 391
Bsp143I	GATC	3 cut(s)	37, 213, 259
BspACI	CCGC	9 cut(s)	44, 96, 149, 157, 169, 173, 207, 272, 325
BspANI	GGCC	7 cut(s)	162, 168, 232, 316, 324, 341, 409
BspCNI	CTCAG	1 cut(s)	64
BspFNI	CGCG	2 cut(s)	11, 146
BspLI	GGNNCC	8 cut(s)	161, 189, 195, 205, 261, 307, 375, 388
BspPI	GGATC	2 cut(s)	254, 267
BspT107I	GGYRCC	2 cut(s)	193, 386
BsrBI	CCGCTC	2 cut(s)	96, 274
BsrFI	RCCGGY	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	4 cut(s)	163, 183, 227, 254
BssMI	GATC	3 cut(s)	37, 213, 259
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	2 cut(s)	183, 254
BstACI	GRCGYC	1 cut(s)	194
BstBAI	YACGTR	2 cut(s)	236, 320
BstC8I	GCNNGC	6 cut(s)	48, 66, 101, 173, 314, 407
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	296
BstFNI	CGCG	2 cut(s)	11, 146
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	4 cut(s)	13, 70, 148, 196
BstKTI	GATC	3 cut(s)	40, 216, 262
BstMBI	GATC	3 cut(s)	37, 213, 259
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 168, 229, 386
BstSCI	CCNGG	2 cut(s)	189, 302
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	2 cut(s)	11, 146
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	7 cut(s)	162, 168, 232, 316, 324, 341, 409
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	296
Cac8I	GCNNGC	6 cut(s)	48, 66, 101, 173, 314, 407
CfoI	GCGC	4 cut(s)	13, 70, 148, 196
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	160, 187, 306
CviAII	CATG	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	51
DinI	GGCGCC	1 cut(s)	195
DpnI	GATC	3 cut(s)	39, 215, 261
DpnII	GATC	3 cut(s)	37, 213, 259
EaeI	YGGCCR	2 cut(s)	166, 322
Ecl136II	GAGCTC	2 cut(s)	103, 291
Eco130I	CCWWGG	2 cut(s)	183, 254
Eco24I	GRGCYC	2 cut(s)	105, 293
Eco47I	GGWCC	2 cut(s)	187, 306
Eco53kI	GAGCTC	2 cut(s)	103, 291
Eco72I	CACGTG	2 cut(s)	236, 320
EcoICRI	GAGCTC	2 cut(s)	103, 291
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	183, 254
EcoT38I	GRGCYC	2 cut(s)	105, 293
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
ErhI	CCWWGG	2 cut(s)	183, 254
FaeI	CATG	1 cut(s)	130
FaiI	YATR	1 cut(s)	128
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	126
FauI	CCCGC	3 cut(s)	150, 180, 279
Fnu4HI	GCNGC	7 cut(s)	14, 44, 97, 149, 169, 207, 325
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	2 cut(s)	105, 293
Fsp4HI	GCNGC	7 cut(s)	14, 44, 97, 149, 169, 207, 325
FspBI	CTAG	2 cut(s)	255, 393
GlaI	GCGC	4 cut(s)	12, 69, 147, 195
GluI	GCNGC	7 cut(s)	14, 44, 97, 149, 169, 207, 325
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	7 cut(s)	162, 168, 232, 316, 324, 341, 409
HapII	CCGG	8 cut(s)	47, 191, 197, 303, 309, 365, 377, 437
HhaI	GCGC	4 cut(s)	13, 70, 148, 196
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	4 cut(s)	11, 68, 146, 194
HinP1I	GCGC	4 cut(s)	11, 68, 146, 194
HinfI	GANTC	2 cut(s)	23, 361
HpaII	CCGG	8 cut(s)	47, 191, 197, 303, 309, 365, 377, 437
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	4 cut(s)	54, 228, 333, 354
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	2 cut(s)	194, 331
HpyCH4IV	ACGT	2 cut(s)	235, 319
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 168, 229, 386
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	2 cut(s)	235, 319
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	4 cut(s)	11, 68, 146, 194
KasI	GGCGCC	1 cut(s)	193
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	37, 213, 259
LmnI	GCTCC	4 cut(s)	203, 279, 379, 439
Lsp1109I	GCAGC	1 cut(s)	25
MaeI	CTAG	2 cut(s)	255, 393
MaeII	ACGT	2 cut(s)	235, 319
MalI	GATC	3 cut(s)	39, 215, 261
MbiI	CCGCTC	2 cut(s)	96, 274
MboI	GATC	3 cut(s)	37, 213, 259
MboII	GAAGA	2 cut(s)	67, 346
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	3 cut(s)	105, 293, 391
MluCI	AATT	1 cut(s)	279
Mly113I	GGCGCC	1 cut(s)	194
MlyI	GAGTC	2 cut(s)	32, 355
MmeI	TCCRAC	1 cut(s)	377
MroNI	GCCGGC	1 cut(s)	46
MspI	CCGG	8 cut(s)	47, 191, 197, 303, 309, 365, 377, 437
MspR9I	CCNGG	2 cut(s)	191, 304
MunI	CAATTG	1 cut(s)	279
MvnI	CGCG	2 cut(s)	11, 146
MwoI	GCNNNNNNNGC	4 cut(s)	154, 168, 229, 386
NaeI	GCCGGC	1 cut(s)	48
NarI	GGCGCC	1 cut(s)	194
NciI	CCSGG	2 cut(s)	191, 304
NdeII	GATC	3 cut(s)	37, 213, 259
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	8 cut(s)	161, 189, 195, 205, 261, 307, 375, 388
PdiI	GCCGGC	1 cut(s)	48
PkrI	GCNGC	7 cut(s)	15, 45, 98, 150, 170, 208, 326
PleI	GAGTC	2 cut(s)	31, 355
PluTI	GGCGCC	1 cut(s)	197
PmaCI	CACGTG	2 cut(s)	236, 320
PmlI	CACGTG	2 cut(s)	236, 320
PpsI	GAGTC	2 cut(s)	31, 355
Ppu21I	YACGTR	2 cut(s)	236, 320
PpuMI	RGGWCCY	1 cut(s)	187
Psp124BI	GAGCTC	2 cut(s)	105, 293
Psp5II	RGGWCCY	1 cut(s)	187
PspCI	CACGTG	2 cut(s)	236, 320
PspN4I	GGNNCC	8 cut(s)	161, 189, 195, 205, 261, 307, 375, 388
PspPI	GGNCC	3 cut(s)	160, 187, 306
PspPPI	RGGWCCY	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	259
SacI	GAGCTC	2 cut(s)	105, 293
SatI	GCNGC	7 cut(s)	14, 44, 97, 149, 169, 207, 325
Sau3AI	GATC	3 cut(s)	37, 213, 259
Sau96I	GGNCC	3 cut(s)	160, 187, 306
SchI	GAGTC	2 cut(s)	32, 355
ScrFI	CCNGG	2 cut(s)	191, 304
SduI	GDGCHC	3 cut(s)	105, 293, 391
SfoI	GGCGCC	1 cut(s)	195
SinI	GGWCC	2 cut(s)	187, 306
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	9 cut(s)	44, 96, 149, 157, 169, 173, 207, 272, 325
SspDI	GGCGCC	1 cut(s)	193
SspMI	CTAG	2 cut(s)	255, 393
SstI	GAGCTC	2 cut(s)	105, 293
StyD4I	CCNGG	2 cut(s)	189, 302
StyI	CCWWGG	2 cut(s)	183, 254
TaiI	ACGT	2 cut(s)	238, 322
TaqI	TCGA	3 cut(s)	21, 293, 359
TasI	AATT	1 cut(s)	279
TauI	GCSGC	6 cut(s)	46, 99, 151, 171, 209, 327
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	101, 143
TspGWI	ACGGA	2 cut(s)	252, 418
VpaK11BI	GGWCC	2 cut(s)	187, 306
XmaJI	CCTAGG	1 cut(s)	254
XspI	CTAG	2 cut(s)	255, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.