Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

1525576 .. 1526732

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1021100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGACGGAGAACTCCAACAATCCACTAGTACCGCCGCCGCCAGTTCCCTCTCTCCCCCAGTACCCAGAGATGATTATGGCGGCAATCGAGGCCCTGAACGACAGCAACGGGTCAAGCAAGTCCGCAATCGCGAAGCACATCGAGTCAACGTACGGAGATCTGCCGGAATCTCACGTGGCCCTCCTCGCGCACCACCTCAACAAGATGAAGGACACCGGCGAGCTCGTCCTGGTCAAGAACAACTACATGAAGCCCGACCCCAACGCGCCGCCCAAGAGGGGCCGCGGCCGTCCTCCCAAGGCCAAGACCCCAGTCCCAGCTGGCACTGTCTCCTCCCCGCCCAGGCCACGTGGCAGGCCCCCCAAGCCCAGGGACCCCTTCGCACCGCCACCTCAGCCCAAGACACATTCCGGAACTGGAAGGCCACGTGGCCGCCCTCCCAAGAAGGCCAAAACGACACCGTCTTCTGCTCCGGTTTCAGTTCCCACCCCAGCTACGGCAACCGGCGCGCCGAGAGGCAGAGGAAGGCCGCCGAAGGTGAAACAGACCGCCGTGGCCCCGGTCGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

192

Amino Acids

20.07

Weight (kDa)

10.64

Isoelectric Point (pI)

65.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	20 - 81	8.1e-13	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	134, 191, 269, 288, 512
AccIII	TCCGGA	1 cut(s)	413
AcoI	YGGCCR	2 cut(s)	289, 433
AcvI	CACGTG	3 cut(s)	178, 353, 431
AfaI	GTAC	3 cut(s)	33, 65, 155
AfiI	CCNNNNNNNGG	4 cut(s)	281, 345, 372, 499
AhlI	ACTAGT	1 cut(s)	28
AjnI	CCWGG	3 cut(s)	231, 344, 371
AluBI	AGCT	3 cut(s)	226, 323, 497
AluI	AGCT	3 cut(s)	226, 323, 497
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	337
Aor13HI	TCCGGA	1 cut(s)	413
AscI	GGCGCGCC	1 cut(s)	510
AspLEI	GCGC	4 cut(s)	193, 271, 512, 514
AspS9I	GGNCC	6 cut(s)	94, 181, 283, 360, 376, 559
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	228
BbrPI	CACGTG	3 cut(s)	178, 353, 431
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	396
BceAI	ACGGC	3 cut(s)	276, 516, 539
BciT130I	CCWGG	3 cut(s)	233, 346, 373
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	337
BcuI	ACTAGT	1 cut(s)	28
BfaI	CTAG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	8 cut(s)	38, 41, 84, 272, 286, 289, 436, 533
BlsI	GCNGC	8 cut(s)	39, 42, 85, 273, 287, 290, 437, 534
Bme1390I	CCNGG	4 cut(s)	233, 346, 373, 563
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	6 cut(s)	94, 181, 283, 360, 376, 559
BmiI	GGNNCC	5 cut(s)	284, 362, 377, 378, 561
BmrFI	CCNGG	4 cut(s)	233, 346, 373, 563
BmrI	ACTGGG	2 cut(s)	55, 308
BmuI	ACTGGG	2 cut(s)	55, 308
BoxI	GACNNNNGTC	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	563
BsaAI	YACGTR	3 cut(s)	178, 353, 431
BsaJI	CCNNGG	7 cut(s)	286, 300, 344, 371, 372, 555, 561
BsaWI	WCCGGW	2 cut(s)	413, 475
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 345, 372, 499
Bse118I	RCCGGY	2 cut(s)	218, 506
Bse1I	ACTGG	4 cut(s)	44, 61, 314, 424
BseAI	TCCGGA	1 cut(s)	413
BseBI	CCWGG	3 cut(s)	233, 346, 373
BseDI	CCNNGG	7 cut(s)	286, 300, 344, 371, 372, 555, 561
BseLI	CCNNNNNNNGG	4 cut(s)	281, 345, 372, 499
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	4 cut(s)	44, 61, 314, 424
BsePI	GCGCGC	1 cut(s)	510
BseRI	GAGGAG	2 cut(s)	176, 325
BseX3I	CGGCCG	1 cut(s)	289
BseYI	CCCAGC	2 cut(s)	319, 493
Bsh1236I	CGCG	5 cut(s)	134, 191, 269, 288, 512
Bsh1285I	CGRYCG	2 cut(s)	292, 567
BsiEI	CGRYCG	2 cut(s)	292, 567
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	6 cut(s)	167, 219, 414, 476, 507, 563
BsiWI	CGTACG	1 cut(s)	153
BslFI	GGGAC	2 cut(s)	302, 389
BslI	CCNNNNNNNGG	4 cut(s)	281, 345, 372, 499
BsmAI	GTCTC	1 cut(s)	337
BsmFI	GGGAC	2 cut(s)	302, 389
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp13I	TCCGGA	1 cut(s)	413
Bsp143I	GATC	1 cut(s)	160
Bsp68I	TCGCGA	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	409
BspEI	TCCGGA	1 cut(s)	413
BspFNI	CGCG	5 cut(s)	134, 191, 269, 288, 512
BspLI	GGNNCC	5 cut(s)	284, 362, 377, 378, 561
BsrFI	RCCGGY	2 cut(s)	218, 506
BsrI	ACTGG	4 cut(s)	44, 61, 314, 424
BssAI	RCCGGY	2 cut(s)	218, 506
BssECI	CCNNGG	7 cut(s)	286, 300, 344, 371, 372, 555, 561
BssHII	GCGCGC	1 cut(s)	510
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	3 cut(s)	233, 346, 373
Bst4CI	ACNGT	2 cut(s)	331, 465
BstBAI	YACGTR	3 cut(s)	178, 353, 431
BstC8I	GCNNGC	4 cut(s)	224, 325, 359, 512
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	2 cut(s)	286, 555
BstFNI	CGCG	5 cut(s)	134, 191, 269, 288, 512
BstHHI	GCGC	4 cut(s)	193, 271, 512, 514
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	160
BstMCI	CGRYCG	2 cut(s)	292, 567
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 188, 367, 397, 509
BstNI	CCWGG	3 cut(s)	233, 346, 373
BstPAI	GACNNNNGTC	1 cut(s)	314
BstSCI	CCNGG	4 cut(s)	231, 344, 371, 561
BstUI	CGCG	5 cut(s)	134, 191, 269, 288, 512
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	289
BtgI	CCRYGG	2 cut(s)	286, 555
BtsIMutI	CAGTG	1 cut(s)	327
BtuMI	TCGCGA	1 cut(s)	134
Cac8I	GCNNGC	4 cut(s)	224, 325, 359, 512
CfoI	GCGC	4 cut(s)	193, 271, 512, 514
Cfr10I	RCCGGY	2 cut(s)	218, 506
Cfr13I	GGNCC	6 cut(s)	94, 181, 283, 360, 376, 559
Cfr42I	CCGCGG	1 cut(s)	289
Csp6I	GTAC	3 cut(s)	32, 64, 154
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	3 cut(s)	32, 64, 154
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
EaeI	YGGCCR	2 cut(s)	289, 433
EagI	CGGCCG	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	226
EclXI	CGGCCG	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	376
Eco52I	CGGCCG	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	226
Eco72I	CACGTG	3 cut(s)	178, 353, 431
EcoICRI	GAGCTC	1 cut(s)	226
EcoO109I	RGGNCCY	3 cut(s)	94, 360, 376
EcoRII	CCWGG	3 cut(s)	231, 344, 371
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	253
FaiI	YATR	2 cut(s)	80, 251
FaqI	GGGAC	2 cut(s)	302, 389
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	8 cut(s)	38, 41, 84, 272, 286, 289, 436, 533
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	8 cut(s)	38, 41, 84, 272, 286, 289, 436, 533
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	4 cut(s)	192, 270, 511, 513
GluI	GCNGC	8 cut(s)	38, 41, 84, 272, 286, 289, 436, 533
GsaI	CCCAGC	2 cut(s)	323, 497
HapII	CCGG	6 cut(s)	167, 219, 414, 476, 507, 563
HhaI	GCGC	4 cut(s)	193, 271, 512, 514
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	4 cut(s)	191, 269, 510, 512
HinP1I	GCGC	4 cut(s)	191, 269, 510, 512
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	146, 170
HpaII	CCGG	6 cut(s)	167, 219, 414, 476, 507, 563
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188III	TCNNGA	3 cut(s)	133, 238, 414
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	6 cut(s)	205, 391, 417, 442, 522, 532
HpyCH4III	ACNGT	2 cut(s)	331, 465
HpyCH4IV	ACGT	4 cut(s)	152, 177, 352, 430
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 188, 367, 397, 509
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	4 cut(s)	152, 177, 352, 430
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	4 cut(s)	191, 269, 510, 512
KflI	GGGWCCC	1 cut(s)	376
Kpn2I	TCCGGA	1 cut(s)	413
KspI	CCGCGG	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	478
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	4 cut(s)	152, 177, 352, 430
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	459
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	413
MspA1I	CMGCKG	2 cut(s)	288, 323
MspI	CCGG	6 cut(s)	167, 219, 414, 476, 507, 563
MspR9I	CCNGG	4 cut(s)	233, 346, 373, 563
MvaI	CCWGG	3 cut(s)	233, 346, 373
MvnI	CGCG	5 cut(s)	134, 191, 269, 288, 512
MwoI	GCNNNNNNNGC	5 cut(s)	92, 188, 367, 397, 509
NciI	CCSGG	1 cut(s)	563
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	5 cut(s)	284, 362, 377, 378, 561
NmeAIII	GCCGAG	1 cut(s)	540
NruI	TCGCGA	1 cut(s)	134
PalAI	GGCGCGCC	1 cut(s)	510
PasI	CCCWGGG	1 cut(s)	372
PauI	GCGCGC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	170
Pfl23II	CGTACG	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	8 cut(s)	39, 42, 85, 273, 287, 290, 437, 534
PleI	GAGTC	1 cut(s)	154
PmaCI	CACGTG	3 cut(s)	178, 353, 431
PmlI	CACGTG	3 cut(s)	178, 353, 431
PpsI	GAGTC	1 cut(s)	154
Ppu21I	YACGTR	3 cut(s)	178, 353, 431
PpuMI	RGGWCCY	1 cut(s)	376
PshAI	GACNNNNGTC	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	3 cut(s)	231, 344, 371
PspCI	CACGTG	3 cut(s)	178, 353, 431
PspFI	CCCAGC	2 cut(s)	319, 493
PspGI	CCWGG	3 cut(s)	231, 344, 371
PspLI	CGTACG	1 cut(s)	153
PspN4I	GGNNCC	5 cut(s)	284, 362, 377, 378, 561
PspPI	GGNCC	6 cut(s)	94, 181, 283, 360, 376, 559
PspPPI	RGGWCCY	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	160
PsyI	GACNNNGTC	1 cut(s)	463
PteI	GCGCGC	1 cut(s)	510
PvuII	CAGCTG	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	134
RsaI	GTAC	3 cut(s)	33, 65, 155
RsaNI	GTAC	3 cut(s)	32, 64, 154
SacI	GAGCTC	1 cut(s)	228
SacII	CCGCGG	1 cut(s)	289
SatI	GCNGC	8 cut(s)	38, 41, 84, 272, 286, 289, 436, 533
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	6 cut(s)	94, 181, 283, 360, 376, 559
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	4 cut(s)	233, 346, 373, 563
SduI	GDGCHC	1 cut(s)	228
Sfr303I	CCGCGG	1 cut(s)	289
SgrAI	CRCCGGYG	1 cut(s)	218
SgrBI	CCGCGG	1 cut(s)	289
SgsI	GGCGCGCC	1 cut(s)	510
SinI	GGWCC	1 cut(s)	376
SpeI	ACTAGT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	4 cut(s)	231, 344, 371, 561
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	331, 465
TaiI	ACGT	4 cut(s)	155, 180, 355, 433
TaqI	TCGA	2 cut(s)	90, 144
TauI	GCSGC	8 cut(s)	40, 43, 86, 274, 288, 291, 438, 535
TfiI	GAWTC	1 cut(s)	170
TscAI	CASTG	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	224, 266
TspGWI	ACGGA	2 cut(s)	23, 171
TspRI	CASTG	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	376
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.