Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009488.1

Orthogroup ID

OG0005431

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 9335

Gene Structure 9335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009488.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2922 bp

gcgcgatcctctcgctgtctctctgttagttgggcggtggtgagaagcatgcgaggccaaaaggagagcaagcgttccaaagaatcagcagcatcggcatcaggaactctgggtgacatatcagaggaggctgtggccaaacttgtcagacgtgcaaatagaagtgggaaaaagaaatgtgagaatcaacttcatccatgtgatttgattggaaagcaagagtccgggccacaaagagacaaaaaagatgtggatgcaactgtcggatcctatgccttggagactcaagcttgtagcagagatgctttgcaaaaggtatctagggatgcgaaaggtgatggggaaagctttcagtgctcttttacaaatagcagggaagaactgaatgattcagattgggaagatggcccagttccaatttcaaattccatgggtggtcatgaagtgactattgaaatgaatgaaacacctgattccagaagacggaaacgtagtcgtcgggcttcagttgaagataaggaattggctgaacttgttcataaagctcatttactctgtttaattgcacggggaagattgattgacagagcttgtgatgatgctcttattcaggcttccttactttctgttctaccagaacacttgctgcatatatccaaggttgcaaaactaactgcgaagcatttgcttcccctagtcttttggtttcaaaataatttccatgttagaactacaagcgtgagaagatcatttcattcggctctgaactttgcccttgaaactcatgaagggacccaagaagagattgctgcattgtctgtggcactcttcagagctttgaatcttacaacccggttggtgtccattttgaatgttgcctccttaaaaccagaggctgacaagactgactgttctagtgaagatgcaagcagattgagtaagggaatattcagcacttcaaccccaatggtggctagaagaaatgaggttcctgtgtctcctgctacaagtagtgagagaaactctgtcggtgaaactcctcagatcggttcatacaaaagtgaggattgccaccttaccagtagcaaaactcggtgcaaaggttcttatgtttatgagttgaatgataaaatgacagatactttcgcatgtgaggaatggaatgatatgtctgaagcatgccatactaagaaatcacaggaatcaaagagaagaggggatcttgagtttgaaatgcagttgcaaatggctcttgccgccacggcagttccgactgcgggtataaaaataggttcagataataaagactcaaatagtaatgttgcaaaaagattgaaaagaactgtttgtgaagaatcaccaatttcctcccagagtatctctactgcagttggatcgagaaaagaaggatccccattgtactgggcagaagtgtactgcaatggggaaaacttgactggaaagtggctacatattgatgctatcaatgcaattattgatggagaacagaaggtcgaagctgtagctgctgcatgcaaaacgcctttgagatatgtagttgctttcgctgggaatggggctaaagatgtgactcgcaggtactgtctcaagtggtatcagatagcatctcaacgagtgaatccaatttggtgggataaggtattggcaccactgagagatttagaggtgagagcaacaggaggcatggtccatttggataaagaacacactggttcctcatctgagcataataaagaaaattttttgaccaagtctggcagtgcggaaatgaatcatcttccaggcaatgtcaacttgaatgcgaagtctagcctagaaggctcaaaagaaactggaaaggggcttgatgtagaatcttcttcgaggagttttgagattgctaccaggaactcccttgaggatatggagttggaaactagggcattaactgagcctcttccaacaaatcaacaggcctataaaaaccatcacctttatgctattgaaaaatggcttaccaagcatcaggtacttcatccgaaagggccaattctggggttttgttccggtcatccagtttaccctaggacatgtgtgcaaactctaaagacaaaacacaaatggctgagggaggggctgcaagttaaaccaaatgagcgtcctgtcaaggagttgaaacgttctatcaagcttcaaaaggtacaggttcttgaaaatgatgattatgtcgggggtaattcaattggaactatcgaactttatgggaagtggcaacttgaaccactgcatctgcctcatgctattaatggaaaagtgccaaagaatgatcatggtaacatggaagtatggtctgagaagtgccttccaccagggactgtgcatttgaggttaccaagggtgttttcggttgccaagagactagaaattgattacgctcccgccatggttgattttgaattcaaaaatggtcaatcatatcctgtctttgatggtatagtggtgtgtgctgagttcaaggatgcaatattggaggcttatgcagaggaacgggacagaagagaggctgtagaaaagaaaagatatgaaatgcaagctatttcacggtggtatcagcttttgtcttccattgtaactcggcagaggatacaaaaccgttatggggagtcttcatctacagcatcagctgagactgaaaatgtgaatagtaaactagatgtacagcttggtggtggtcagaatgatgaggaacctcttggatgccagcaaggaggcctacatgaaaatacactggatgatcctaccatcgagctgtacaatcatgagcatgtattcttgacagaaaaccagagttttgatgaagacaacttggtagttacaaagaggtgtctctgtggattttcagtgcaagtggaagaactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000111 GO:0000217 GO:0000404 GO:0000405 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005739 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007346 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010564 GO:0016020 GO:0016043 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0071942 GO:0071944 GO:0090304 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901987 GO:1901990 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

BHD_1 BHD_2 BHD_3 Rad4 Transglut_core

Protein Analysis

973

Amino Acids

108.59

Weight (kDa)

6.81

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16630 AT5G16630 AT5G16630
fragaria_vesca	FvH4_1g28770 FvH4_1g28770 FvH4_1g28770 FvH4_1g28770
malus_domestica	MD17G1258300.v1.1
prunus_persica	Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1
pyrus_communis	pycom17g26020
rosa_chinensis	RchiOBHm_Chr3g0493161
rosa_laevigata	RLG00000022722 RLG00000022723 RLG00000022724
rosa_multiflora	Rmu_co8401441.1_g000001 Rmu_sc0003290.1_g000009 Rmu_sc0009488.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391760
rosa_rugosa	Rorug03G0259500 Rorug03G0259600 Rorug03G0259700
rosa_samantha	Rh3AG308600 Rh3BG344700 Rh3CG341900 Rh3DG344000
rosa_wichuraiana	Rw3G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1587
AccB1I	GGYRCC	1 cut(s)	1666
AccII	CGCG	1 cut(s)	4
AciI	CCGC	5 cut(s)	35, 1257, 1277, 1784, 2439
AclI	AACGTT	1 cut(s)	2179
AclWI	GGATC	7 cut(s)	261, 274, 1227, 1402, 1404, 1417, 2789
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	3 cut(s)	424, 1759, 2456
AcuI	CTGAAG	3 cut(s)	489, 814, 1194
AfaI	GTAC	7 cut(s)	1421, 1436, 1601, 2031, 2202, 2718, 2813
AfiI	CCNNNNNNNGG	6 cut(s)	483, 970, 1046, 1277, 2054, 2659
AflIII	ACRYGT	1 cut(s)	2090
AjiI	CACGTC	1 cut(s)	152
AjnI	CCWGG	3 cut(s)	1801, 1904, 2368
AjuI	GAANNNNNNNTTGG	4 cut(s)	409, 441, 2386, 2418
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	8 cut(s)	23, 231, 275, 1002, 1610, 2410, 2681, 2891
AlwI	GGATC	7 cut(s)	261, 274, 1227, 1402, 1404, 1417, 2789
AlwNI	CAGNNNCTG	3 cut(s)	896, 1602, 2375
AoxI	GGCC	7 cut(s)	55, 135, 227, 406, 1974, 2045, 2770
ApeKI	GCWGC	6 cut(s)	89, 646, 809, 1526, 1529, 2137
ApoI	RAATTY	3 cut(s)	424, 1759, 2456
ArsI	GACNNNNNNTTYG	2 cut(s)	2365, 2397
AseI	ATTAAT	1 cut(s)	2304
Asp700I	GAANNNNTTC	2 cut(s)	348, 534
AspA2I	CCTAGG	1 cut(s)	2084
AspLEI	GCGC	1 cut(s)	4
AspS9I	GGNCC	5 cut(s)	227, 407, 792, 1708, 2045
AsuC2I	CCSGG	2 cut(s)	226, 853
AsuHPI	GGTGA	7 cut(s)	52, 125, 347, 1043, 1350, 1699, 1982
AvaII	GGWCC	2 cut(s)	792, 1708
AvrII	CCTAGG	1 cut(s)	2084
BaeI	ACNNNNGTAYC	2 cut(s)	2591, 2624
BalI	TGGCCA	1 cut(s)	137
BamHI	GGATCC	2 cut(s)	266, 1409
BanI	GGYRCC	1 cut(s)	1666
BbsI	GAAGAC	4 cut(s)	487, 2613, 2658, 2865
Bbv12I	GWGCWC	1 cut(s)	359
BbvCI	CCTCAGC	1 cut(s)	2126
BbvI	GCAGC	6 cut(s)	101, 633, 796, 1513, 1516, 2124
BccI	CCATC	6 cut(s)	332, 398, 1493, 1995, 2483, 2810
BceAI	ACGGC	1 cut(s)	1278
BcgI	CGANNNNNNTGC	4 cut(s)	667, 701, 1377, 1411
BciT130I	CCWGG	3 cut(s)	1803, 1906, 2370
BciVI	GTATCC	1 cut(s)	2637
BclI	TGATCA	1 cut(s)	2326
BcnI	CCSGG	2 cut(s)	226, 853
BcoDI	GTCTC	8 cut(s)	23, 231, 275, 1002, 1610, 2410, 2681, 2891
BfmI	CTRYAG	5 cut(s)	1386, 1521, 2565, 2673, 2918
BfuAI	ACCTGC	1 cut(s)	1587
BfuI	GTATCC	1 cut(s)	2637
BglI	GCCNNNNNGGC	2 cut(s)	1262, 1839
BisI	GCNGC	7 cut(s)	90, 647, 810, 1257, 1527, 1530, 2138
BlnI	CCTAGG	1 cut(s)	2084
BlsI	GCNGC	7 cut(s)	91, 648, 811, 1258, 1528, 1531, 2139
Bme1390I	CCNGG	5 cut(s)	226, 853, 1803, 1906, 2370
Bme18I	GGWCC	2 cut(s)	792, 1708
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	5 cut(s)	227, 407, 792, 1708, 2045
BmiI	GGNNCC	8 cut(s)	268, 793, 794, 990, 1411, 1668, 1735, 2748
BmrFI	CCNGG	5 cut(s)	226, 853, 1803, 1906, 2370
BmrI	ACTGGG	2 cut(s)	404, 1432
BmuI	ACTGGG	2 cut(s)	404, 1432
BpiI	GAAGAC	4 cut(s)	487, 2613, 2658, 2865
BplI	GAGNNNNNCTC	2 cut(s)	1007, 1039
Bpu10I	CCTNAGC	1 cut(s)	2126
BpuEI	CTTGAG	4 cut(s)	270, 1244, 1592, 1937
BpuMI	CCSGG	2 cut(s)	226, 853
BsaJI	CCNNGG	8 cut(s)	276, 429, 657, 1260, 2084, 2369, 2393, 2442
BsaWI	WCCGGW	1 cut(s)	2066
BsaXI	ACNNNNNCTCC	2 cut(s)	1692, 1722
Bsc4I	CCNNNNNNNGG	6 cut(s)	483, 970, 1046, 1277, 2054, 2659
Bse1I	ACTGG	8 cut(s)	410, 1080, 1427, 1462, 1735, 1858, 2075, 2793
Bse3DI	GCAATG	2 cut(s)	1447, 1813
BseBI	CCWGG	3 cut(s)	1803, 1906, 2370
BseDI	CCNNGG	8 cut(s)	276, 429, 657, 1260, 2084, 2369, 2393, 2442
BseGI	GGATG	8 cut(s)	193, 259, 331, 2035, 2071, 2524, 2762, 2797
BseLI	CCNNNNNNNGG	6 cut(s)	483, 970, 1046, 1277, 2054, 2659
BseMI	GCAATG	2 cut(s)	1447, 1813
BseMII	CTCAG	8 cut(s)	1055, 1664, 1734, 1941, 2117, 2343, 2499, 2676
BseNI	ACTGG	8 cut(s)	410, 1080, 1427, 1462, 1735, 1858, 2075, 2793
BseRI	GAGGAG	3 cut(s)	140, 1029, 1900
BseXI	GCAGC	6 cut(s)	101, 633, 796, 1513, 1516, 2124
BseYI	CCCAGC	1 cut(s)	1568
Bsh1236I	CGCG	1 cut(s)	4
BshFI	GGCC	7 cut(s)	57, 137, 229, 408, 1976, 2047, 2772
BshNI	GGYRCC	1 cut(s)	1666
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	3 cut(s)	225, 853, 2067
BslFI	GGGAC	3 cut(s)	805, 2386, 2564
BslI	CCNNNNNNNGG	6 cut(s)	483, 970, 1046, 1277, 2054, 2659
BsmAI	GTCTC	8 cut(s)	23, 231, 275, 1002, 1610, 2410, 2681, 2891
BsmFI	GGGAC	3 cut(s)	805, 2386, 2564
BsmI	GAATGC	1 cut(s)	1825
BsnI	GGCC	7 cut(s)	57, 137, 229, 408, 1976, 2047, 2772
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp1407I	TGTACA	2 cut(s)	2716, 2811
Bsp143I	GATC	9 cut(s)	5, 266, 746, 1044, 1219, 1394, 1409, 2326, 2794
Bsp19I	CCATGG	2 cut(s)	429, 2442
BspACI	CCGC	5 cut(s)	35, 1257, 1277, 1784, 2439
BspANI	GGCC	7 cut(s)	57, 137, 229, 408, 1976, 2047, 2772
BspCNI	CTCAG	8 cut(s)	1054, 1665, 1735, 1942, 2118, 2344, 2500, 2677
BspFNI	CGCG	1 cut(s)	4
BspHI	TCATGA	3 cut(s)	439, 784, 2818
BspLI	GGNNCC	8 cut(s)	268, 793, 794, 990, 1411, 1668, 1735, 2748
BspMAI	CTGCAG	1 cut(s)	1390
BspMI	ACCTGC	1 cut(s)	1587
BspPI	GGATC	7 cut(s)	261, 274, 1227, 1402, 1404, 1417, 2789
BspT107I	GGYRCC	1 cut(s)	1666
BsrDI	GCAATG	2 cut(s)	1447, 1813
BsrGI	TGTACA	2 cut(s)	2716, 2811
BsrI	ACTGG	8 cut(s)	410, 1080, 1427, 1462, 1735, 1858, 2075, 2793
BssECI	CCNNGG	8 cut(s)	276, 429, 657, 1260, 2084, 2369, 2393, 2442
BssMI	GATC	9 cut(s)	5, 266, 746, 1044, 1219, 1394, 1409, 2326, 2794
BssT1I	CCWWGG	6 cut(s)	276, 429, 657, 2084, 2393, 2442
Bst2UI	CCWGG	3 cut(s)	1803, 1906, 2370
Bst4CI	ACNGT	8 cut(s)	262, 911, 1345, 1604, 2377, 2604, 2654, 2919
Bst6I	CTCTTC	5 cut(s)	795, 833, 1207, 1962, 2551
BstAUI	TGTACA	2 cut(s)	2716, 2811
BstC8I	GCNNGC	7 cut(s)	50, 71, 928, 1180, 1534, 2592, 2762
BstDEI	CTNAG	9 cut(s)	1041, 1188, 1673, 1743, 1950, 2126, 2352, 2508, 2685
BstDSI	CCRYGG	3 cut(s)	429, 1260, 2442
BstEII	GGTNACC	1 cut(s)	2388
BstF5I	GGATG	8 cut(s)	193, 259, 331, 2035, 2071, 2524, 2762, 2797
BstFNI	CGCG	1 cut(s)	4
BstHHI	GCGC	1 cut(s)	4
BstKTI	GATC	9 cut(s)	8, 269, 749, 1047, 1222, 1397, 1412, 2329, 2797
BstMAI	GTCTC	8 cut(s)	23, 231, 275, 1002, 1610, 2410, 2681, 2891
BstMBI	GATC	9 cut(s)	5, 266, 746, 1044, 1219, 1394, 1409, 2326, 2794
BstMWI	GCNNNNNNNGC	9 cut(s)	54, 95, 354, 1256, 1262, 1487, 1526, 1839, 2020
BstNI	CCWGG	3 cut(s)	1803, 1906, 2370
BstNSI	RCATGY	6 cut(s)	52, 1152, 1182, 1536, 2094, 2828
BstPI	GGTNACC	1 cut(s)	2388
BstSCI	CCNGG	5 cut(s)	224, 851, 1801, 1904, 2368
BstSFI	CTRYAG	5 cut(s)	1386, 1521, 2565, 2673, 2918
BstUI	CGCG	1 cut(s)	4
BstV1I	GCAGC	6 cut(s)	101, 633, 796, 1513, 1516, 2124
BstV2I	GAAGAC	4 cut(s)	487, 2613, 2658, 2865
BstX2I	RGATCY	3 cut(s)	266, 1219, 1409
BstXI	CCANNNNNNTGG	2 cut(s)	1422, 1650
BstYI	RGATCY	3 cut(s)	266, 1219, 1409
BsuI	GTATCC	1 cut(s)	2637
BsuRI	GGCC	7 cut(s)	57, 137, 229, 408, 1976, 2047, 2772
BtgI	CCRYGG	3 cut(s)	429, 1260, 2442
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	8 cut(s)	193, 259, 331, 2035, 2071, 2524, 2762, 2797
BtsI	GCAGTG	2 cut(s)	1786, 2282
BtsIMutI	CAGTG	7 cut(s)	359, 1670, 1728, 1786, 2282, 2786, 2907
BveI	ACCTGC	1 cut(s)	1587
Cac8I	GCNNGC	7 cut(s)	50, 71, 928, 1180, 1534, 2592, 2762
CaiI	CAGNNNCTG	3 cut(s)	896, 1602, 2375
CciI	TCATGA	3 cut(s)	439, 784, 2818
CfoI	GCGC	1 cut(s)	4
Cfr13I	GGNCC	5 cut(s)	227, 407, 792, 1708, 2045
CseI	GACGC	1 cut(s)	2147
Csp6I	GTAC	7 cut(s)	1420, 1435, 1600, 2030, 2201, 2717, 2812
CviQI	GTAC	7 cut(s)	1420, 1435, 1600, 2030, 2201, 2717, 2812
DdeI	CTNAG	9 cut(s)	1041, 1188, 1673, 1743, 1950, 2126, 2352, 2508, 2685
DpnI	GATC	9 cut(s)	7, 268, 748, 1046, 1221, 1396, 1411, 2328, 2796
DpnII	GATC	9 cut(s)	5, 266, 746, 1044, 1219, 1394, 1409, 2326, 2794
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	5 cut(s)	795, 833, 1207, 1962, 2551
EarI	CTCTTC	5 cut(s)	795, 833, 1207, 1962, 2551
Eco130I	CCWWGG	6 cut(s)	276, 429, 657, 2084, 2393, 2442
Eco147I	AGGCCT	2 cut(s)	1976, 2772
Eco47I	GGWCC	2 cut(s)	792, 1708
Eco57I	CTGAAG	3 cut(s)	489, 814, 1194
Eco91I	GGTNACC	1 cut(s)	2388
EcoO109I	RGGNCCY	1 cut(s)	792
EcoO65I	GGTNACC	1 cut(s)	2388
EcoRI	GAATTC	1 cut(s)	2456
EcoRII	CCWGG	3 cut(s)	1801, 1904, 2368
EcoT14I	CCWWGG	6 cut(s)	276, 429, 657, 2084, 2393, 2442
ErhI	CCWWGG	6 cut(s)	276, 429, 657, 2084, 2393, 2442
FaqI	GGGAC	3 cut(s)	805, 2386, 2564
FauI	CCCGC	2 cut(s)	1270, 2446
FbaI	TGATCA	1 cut(s)	2326
Fnu4HI	GCNGC	7 cut(s)	90, 647, 810, 1257, 1527, 1530, 2138
FokI	GGATG	8 cut(s)	180, 266, 338, 2022, 2058, 2531, 2769, 2804
Fsp4HI	GCNGC	7 cut(s)	90, 647, 810, 1257, 1527, 1530, 2138
GlaI	GCGC	1 cut(s)	3
GluI	GCNGC	7 cut(s)	90, 647, 810, 1257, 1527, 1530, 2138
GsaI	CCCAGC	1 cut(s)	1572
HaeIII	GGCC	7 cut(s)	57, 137, 229, 408, 1976, 2047, 2772
HapII	CCGG	3 cut(s)	225, 853, 2067
HgaI	GACGC	1 cut(s)	2147
HhaI	GCGC	1 cut(s)	4
Hin6I	GCGC	1 cut(s)	2
HinP1I	GCGC	1 cut(s)	2
HincII	GTYRAC	1 cut(s)	1813
HindII	GTYRAC	1 cut(s)	1813
HindIII	AAGCTT	3 cut(s)	288, 346, 2189
HpaII	CCGG	3 cut(s)	225, 853, 2067
HphI	GGTGA	7 cut(s)	52, 125, 347, 1043, 1350, 1699, 1982
Hpy166II	GTNNAC	4 cut(s)	1435, 1813, 2080, 2708
Hpy188III	TCNNGA	9 cut(s)	102, 440, 477, 785, 1223, 1398, 2210, 2819, 2833
Hpy8I	GTNNAC	4 cut(s)	1435, 1813, 2080, 2708
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	5 cut(s)	782, 1400, 1504, 1832, 2372
HpyCH4III	ACNGT	8 cut(s)	262, 911, 1345, 1604, 2377, 2604, 2654, 2919
HpyCH4IV	ACGT	3 cut(s)	151, 490, 2179
HpyF10VI	GCNNNNNNNGC	9 cut(s)	54, 95, 354, 1256, 1262, 1487, 1526, 1839, 2020
HpyF3I	CTNAG	9 cut(s)	1041, 1188, 1673, 1743, 1950, 2126, 2352, 2508, 2685
HpySE526I	ACGT	3 cut(s)	151, 490, 2179
HspAI	GCGC	1 cut(s)	2
KflI	GGGWCCC	1 cut(s)	792
Ksp22I	TGATCA	1 cut(s)	2326
Kzo9I	GATC	9 cut(s)	5, 266, 746, 1044, 1219, 1394, 1409, 2326, 2794
LmnI	GCTCC	1 cut(s)	2440
Lsp1109I	GCAGC	6 cut(s)	101, 633, 796, 1513, 1516, 2124
MaeII	ACGT	3 cut(s)	151, 490, 2179
MaeIII	GTNAC	7 cut(s)	113, 445, 1588, 2333, 2388, 2629, 2872
MalI	GATC	9 cut(s)	7, 268, 748, 1046, 1221, 1396, 1411, 2328, 2796
MboI	GATC	9 cut(s)	5, 266, 746, 1044, 1219, 1394, 1409, 2326, 2794
MfeI	CAATTG	1 cut(s)	2241
MflI	RGATCY	3 cut(s)	266, 1219, 1409
MhlI	GDGCHC	1 cut(s)	359
MlsI	TGGCCA	1 cut(s)	137
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	5 cut(s)	230, 277, 1301, 1585, 2672
MmeI	TCCRAC	5 cut(s)	244, 1295, 1372, 1911, 1985
Mox20I	TGGCCA	1 cut(s)	137
MroXI	GAANNNNTTC	2 cut(s)	348, 534
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	5 cut(s)	560, 884, 1946, 2145, 2304
MslI	CAYNNNNRTG	4 cut(s)	198, 1476, 1995, 2823
Msp20I	TGGCCA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	2684
MspI	CCGG	3 cut(s)	225, 853, 2067
MspR9I	CCNGG	5 cut(s)	226, 853, 1803, 1906, 2370
MunI	CAATTG	1 cut(s)	2241
Mva1269I	GAATGC	1 cut(s)	1825
MvaI	CCWGG	3 cut(s)	1803, 1906, 2370
MvnI	CGCG	1 cut(s)	4
MwoI	GCNNNNNNNGC	9 cut(s)	54, 95, 354, 1256, 1262, 1487, 1526, 1839, 2020
NciI	CCSGG	2 cut(s)	226, 853
NcoI	CCATGG	2 cut(s)	429, 2442
NdeII	GATC	9 cut(s)	5, 266, 746, 1044, 1219, 1394, 1409, 2326, 2794
NlaIV	GGNNCC	8 cut(s)	268, 793, 794, 990, 1411, 1668, 1735, 2748
NmeAIII	GCCGAG	1 cut(s)	2614
NmuCI	GTSAC	3 cut(s)	113, 445, 1588
NspI	RCATGY	6 cut(s)	52, 1152, 1182, 1536, 2094, 2828
PaeI	GCATGC	3 cut(s)	52, 1182, 1536
PagI	TCATGA	3 cut(s)	439, 784, 2818
PceI	AGGCCT	2 cut(s)	1976, 2772
PciI	ACATGT	1 cut(s)	2090
PcsI	WCGNNNNNNNCGW	1 cut(s)	1268
PctI	GAATGC	1 cut(s)	1825
PdmI	GAANNNNTTC	2 cut(s)	348, 534
PflFI	GACNNNGTC	1 cut(s)	1771
PkrI	GCNGC	7 cut(s)	91, 648, 811, 1258, 1528, 1531, 2139
PleI	GAGTC	5 cut(s)	229, 277, 1301, 1585, 2671
PpsI	GAGTC	5 cut(s)	229, 277, 1301, 1585, 2671
PpuMI	RGGWCCY	1 cut(s)	792
PscI	ACATGT	1 cut(s)	2090
PshBI	ATTAAT	1 cut(s)	2304
Psp1406I	AACGTT	1 cut(s)	2179
Psp5II	RGGWCCY	1 cut(s)	792
Psp6I	CCWGG	3 cut(s)	1801, 1904, 2368
PspEI	GGTNACC	1 cut(s)	2388
PspFI	CCCAGC	1 cut(s)	1568
PspGI	CCWGG	3 cut(s)	1801, 1904, 2368
PspN4I	GGNNCC	8 cut(s)	268, 793, 794, 990, 1411, 1668, 1735, 2748
PspPI	GGNCC	5 cut(s)	227, 407, 792, 1708, 2045
PspPPI	RGGWCCY	1 cut(s)	792
PstI	CTGCAG	1 cut(s)	1390
PstNI	CAGNNNCTG	3 cut(s)	896, 1602, 2375
PsuI	RGATCY	3 cut(s)	266, 1219, 1409
PsyI	GACNNNGTC	1 cut(s)	1771
PvuII	CAGCTG	1 cut(s)	2684
RsaI	GTAC	7 cut(s)	1421, 1436, 1601, 2031, 2202, 2718, 2813
RsaNI	GTAC	7 cut(s)	1420, 1435, 1600, 2030, 2201, 2717, 2812
RseI	CAYNNNNRTG	4 cut(s)	198, 1476, 1995, 2823
SaqAI	TTAA	5 cut(s)	560, 884, 1946, 2145, 2304
SatI	GCNGC	7 cut(s)	90, 647, 810, 1257, 1527, 1530, 2138
Sau3AI	GATC	9 cut(s)	5, 266, 746, 1044, 1219, 1394, 1409, 2326, 2794
Sau96I	GGNCC	5 cut(s)	227, 407, 792, 1708, 2045
SchI	GAGTC	5 cut(s)	230, 277, 1301, 1585, 2672
ScrFI	CCNGG	5 cut(s)	226, 853, 1803, 1906, 2370
SduI	GDGCHC	1 cut(s)	359
SfcI	CTRYAG	5 cut(s)	1386, 1521, 2565, 2673, 2918
SinI	GGWCC	2 cut(s)	792, 1708
SmiMI	CAYNNNNRTG	4 cut(s)	198, 1476, 1995, 2823
SmlI	CTYRAG	4 cut(s)	285, 1223, 1607, 1916
SmoI	CTYRAG	4 cut(s)	285, 1223, 1607, 1916
SphI	GCATGC	3 cut(s)	52, 1182, 1536
SseBI	AGGCCT	2 cut(s)	1976, 2772
SsiI	CCGC	5 cut(s)	35, 1257, 1277, 1784, 2439
SspI	AATATT	2 cut(s)	948, 2526
StuI	AGGCCT	2 cut(s)	1976, 2772
StyD4I	CCNGG	5 cut(s)	224, 851, 1801, 1904, 2368
StyI	CCWWGG	6 cut(s)	276, 429, 657, 2084, 2393, 2442
TaaI	ACNGT	8 cut(s)	262, 911, 1345, 1604, 2377, 2604, 2654, 2919
TaiI	ACGT	3 cut(s)	154, 493, 2182
TaqI	TCGA	5 cut(s)	1397, 1515, 1883, 2253, 2805
TatI	WGTACW	4 cut(s)	1419, 1434, 2716, 2811
TauI	GCSGC	1 cut(s)	1259
Tru1I	TTAA	5 cut(s)	560, 884, 1946, 2145, 2304
Tru9I	TTAA	5 cut(s)	560, 884, 1946, 2145, 2304
TscAI	CASTG	7 cut(s)	359, 1677, 1735, 1786, 2289, 2793, 2907
TseFI	GTSAC	3 cut(s)	113, 445, 1588
TseI	GCWGC	6 cut(s)	89, 646, 809, 1526, 1529, 2137
Tsp45I	GTSAC	3 cut(s)	113, 445, 1588
TspGWI	ACGGA	1 cut(s)	499
TspRI	CASTG	7 cut(s)	359, 1677, 1735, 1786, 2289, 2793, 2907
Tth111I	GACNNNGTC	1 cut(s)	1771
VpaK11BI	GGWCC	2 cut(s)	792, 1708
VspI	ATTAAT	1 cut(s)	2304
XapI	RAATTY	3 cut(s)	424, 1759, 2456
XceI	RCATGY	6 cut(s)	52, 1152, 1182, 1536, 2094, 2828
XmaJI	CCTAGG	1 cut(s)	2084
XmnI	GAANNNNTTC	2 cut(s)	348, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.