Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003290.1

Orthogroup ID

OG0005431

Physical Location & Seq

Genomic Coordinates Forward (+)

47174 .. 48990

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003290.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgcgaggccaaaaggagagcaagcgttccaaagaatcagcagcatcggcatcaggaactctgggtgacatatcagaggaggctgtggccaaacttgtcagacgtgcaaatagaagtgggaaaaagaaatgtgagaatcaacttcatccatgtgatttgattggaaagcaagagtccgggccacaaagagacaaaaaagatgtggatgcaactgtcggatcctatgccttggagactcaagcttgtagcagagatgctttgcaaaaggtatctagggatgcgaaaggtgatggggaaagctttcagtgctcttttacaaatagcagggaagaactgaatgattcagattgggaagatggcccagttccaatttcaaattccatgggtggtcatgaagtgactattgaaatgaatgaaacacctgattccagaagacggaaacgtagtcgtcgggcttcagttgaagataaggaattggctgaacttgttcataaagctcatttactctgtttaattgcacggggaagattgattgacagagcttgtgatgatgctcttattcaggttgtttctggtaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000111 GO:0000217 GO:0000404 GO:0000405 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005739 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007346 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010564 GO:0016020 GO:0016043 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0071942 GO:0071944 GO:0090304 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901987 GO:1901990 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

BHD_1 BHD_2 BHD_3 Rad4 Transglut_core

Protein Analysis

193

Amino Acids

21.21

Weight (kDa)

6.91

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16630 AT5G16630 AT5G16630
fragaria_vesca	FvH4_1g28770 FvH4_1g28770 FvH4_1g28770 FvH4_1g28770
malus_domestica	MD17G1258300.v1.1
prunus_persica	Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1
pyrus_communis	pycom17g26020
rosa_chinensis	RchiOBHm_Chr3g0493161
rosa_laevigata	RLG00000022722 RLG00000022723 RLG00000022724
rosa_multiflora	Rmu_co8401441.1_g000001 Rmu_sc0003290.1_g000009 Rmu_sc0009488.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391760
rosa_rugosa	Rorug03G0259500 Rorug03G0259600 Rorug03G0259700
rosa_samantha	Rh3AG308600 Rh3BG344700 Rh3CG341900 Rh3DG344000
rosa_wichuraiana	Rw3G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	213, 226
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	3 cut(s)	375, 407, 464
AjiI	CACGTC	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	4 cut(s)	242, 300, 497, 542
AluI	AGCT	4 cut(s)	242, 300, 497, 542
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	183, 227
AlwI	GGATC	2 cut(s)	213, 226
AoxI	GGCC	4 cut(s)	7, 87, 179, 358
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	376
Asp700I	GAANNNNTTC	2 cut(s)	300, 486
AspS9I	GGNCC	2 cut(s)	179, 359
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	77, 299
BalI	TGGCCA	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	2 cut(s)	284, 350
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	183, 227
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	179, 359
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	178
BmrI	ACTGGG	1 cut(s)	356
BmsI	GCATC	6 cut(s)	53, 59, 196, 244, 268, 541
BmuI	ACTGGG	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	228, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	228, 381
BseGI	GGATG	3 cut(s)	145, 211, 283
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	53
BshFI	GGCC	4 cut(s)	9, 89, 181, 360
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	2 cut(s)	183, 227
BsnI	GGCC	4 cut(s)	9, 89, 181, 360
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	218
Bsp19I	CCATGG	1 cut(s)	381
BspANI	GGCC	4 cut(s)	9, 89, 181, 360
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	213, 226
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	228, 381
BssMI	GATC	1 cut(s)	218
BssT1I	CCWWGG	2 cut(s)	228, 381
Bst4CI	ACNGT	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	3 cut(s)	145, 211, 283
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	2 cut(s)	183, 227
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 306
BstSCI	CCNGG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	9, 89, 181, 360
BtgI	CCRYGG	1 cut(s)	381
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	145, 211, 283
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	23
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	179, 359
CviAII	CATG	3 cut(s)	150, 382, 392
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	228, 381
Eco57I	CTGAAG	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	228, 381
ErhI	CCWWGG	2 cut(s)	228, 381
FaeI	CATG	3 cut(s)	153, 385, 395
FaiI	YATR	6 cut(s)	71, 151, 225, 383, 393, 492
FatI	CATG	3 cut(s)	149, 381, 391
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	3 cut(s)	132, 218, 290
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	4 cut(s)	9, 89, 181, 360
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	3 cut(s)	153, 385, 395
HindIII	AAGCTT	2 cut(s)	240, 298
HinfI	GANTC	6 cut(s)	35, 136, 173, 235, 341, 425
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	77, 299
Hpy188I	TCNGA	4 cut(s)	76, 101, 218, 346
Hpy188III	TCNNGA	3 cut(s)	54, 392, 429
Hpy99I	CGWCG	1 cut(s)	453
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	2 cut(s)	103, 442
HpyCH4V	TGCA	4 cut(s)	107, 209, 262, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 306
HpySE526I	ACGT	2 cut(s)	103, 442
Hsp92II	CATG	3 cut(s)	153, 385, 395
Kzo9I	GATC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	39, 47, 190, 310, 375, 435, 442, 548, 558
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	6 cut(s)	53, 59, 196, 244, 268, 541
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	2 cut(s)	103, 442
MaeIII	GTNAC	2 cut(s)	65, 397
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	5 cut(s)	341, 365, 444, 476, 537
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	311
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	5 cut(s)	369, 376, 473, 513, 577
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	182, 229
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	2 cut(s)	70, 73
Mox20I	TGGCCA	1 cut(s)	89
MroXI	GAANNNNTTC	2 cut(s)	300, 486
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	1 cut(s)	512
MslI	CAYNNNNRTG	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	47, 306
NciI	CCSGG	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	153, 385, 395
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	65, 397
PagI	TCATGA	1 cut(s)	391
PdmI	GAANNNNTTC	2 cut(s)	300, 486
PfeI	GAWTC	4 cut(s)	35, 136, 341, 425
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	2 cut(s)	181, 229
PpsI	GAGTC	2 cut(s)	181, 229
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	179, 359
PsuI	RGATCY	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	2 cut(s)	179, 359
SchI	GAGTC	2 cut(s)	182, 229
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	311
SfaNI	GCATC	6 cut(s)	53, 59, 196, 244, 268, 541
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	5 cut(s)	369, 376, 473, 513, 577
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	176
StyI	CCWWGG	2 cut(s)	228, 381
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	2 cut(s)	106, 445
TasI	AATT	5 cut(s)	369, 376, 473, 513, 577
TfiI	GAWTC	4 cut(s)	35, 136, 341, 425
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	2 cut(s)	65, 397
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	2 cut(s)	65, 397
TspDTI	ATGAA	5 cut(s)	134, 408, 425, 429, 479
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	376
XmnI	GAANNNNTTC	2 cut(s)	300, 486
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.