Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8401441.1

Orthogroup ID

OG0005431

Physical Location & Seq

Genomic Coordinates Reverse (-)

357 .. 1177

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8401441.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggctatggtgttctgtggcatcaaaactaatgttgttaagctgggattgtttagggatgttaaaaaagcagtacgtgcaaatagaagtgggaaaaagaaatgtgagaatcaacttcatccatgtgatttgattggaaagcaagagtccgggccacaaagagacaaaaaagatgtggatgcaactgtcggatcctatgccttggagactcaagcttgtagcagagatgctttgcaaaaggtatctagggatgcgaaaggtgatggggaaagctttcagtgctcttttacaaatagcagggaagaactgaatgattcagattgggaagatggcccagttccaatttcaaattccatgggtggtcatgaagtgactattgaaatgaatgaaacacctgattccagaagacggaaacgtagtcgtcgggcttcagttgaagataaggaattggctgaacttgttcataaagctcatttactctgtttaattgcacggggaagattgattgacagagcttgtgatgatgctcttattcaggttgtttctggtaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000111 GO:0000217 GO:0000404 GO:0000405 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005739 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007346 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010564 GO:0016020 GO:0016043 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0071942 GO:0071944 GO:0090304 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901987 GO:1901990 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

BHD_1 BHD_2 BHD_3 Rad4 Transglut_core

Protein Analysis

184

Amino Acids

20.4

Weight (kDa)

8.15

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16630 AT5G16630 AT5G16630
fragaria_vesca	FvH4_1g28770 FvH4_1g28770 FvH4_1g28770 FvH4_1g28770
malus_domestica	MD17G1258300.v1.1
prunus_persica	Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1
pyrus_communis	pycom17g26020
rosa_chinensis	RchiOBHm_Chr3g0493161
rosa_laevigata	RLG00000022722 RLG00000022723 RLG00000022724
rosa_multiflora	Rmu_co8401441.1_g000001 Rmu_sc0003290.1_g000009 Rmu_sc0009488.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391760
rosa_rugosa	Rorug03G0259500 Rorug03G0259600 Rorug03G0259700
rosa_samantha	Rh3AG308600 Rh3BG344700 Rh3CG341900 Rh3DG344000
rosa_wichuraiana	Rw3G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	186, 199
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	348, 380, 437
AjuI	GAANNNNNNNTTGG	2 cut(s)	334, 366
AluBI	AGCT	5 cut(s)	43, 215, 273, 470, 515
AluI	AGCT	5 cut(s)	43, 215, 273, 470, 515
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	2 cut(s)	156, 200
AlwI	GGATC	2 cut(s)	186, 199
AoxI	GGCC	2 cut(s)	152, 331
ApoI	RAATTY	1 cut(s)	349
Asp700I	GAANNNNTTC	2 cut(s)	273, 459
AspS9I	GGNCC	2 cut(s)	152, 332
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	284
BccI	CCATC	2 cut(s)	257, 323
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	156, 200
BfaI	CTAG	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	152, 332
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	5 cut(s)	30, 169, 217, 241, 514
BmuI	ACTGGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	201, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	201, 354
BseGI	GGATG	4 cut(s)	64, 118, 184, 256
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	43
BshFI	GGCC	2 cut(s)	154, 333
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	156, 200
BsnI	GGCC	2 cut(s)	154, 333
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	354
BspANI	GGCC	2 cut(s)	154, 333
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	2 cut(s)	186, 199
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	201, 354
BssMI	GATC	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	201, 354
Bst4CI	ACNGT	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	77
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	4 cut(s)	64, 118, 184, 256
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	2 cut(s)	156, 200
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 279
BstSCI	CCNGG	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	154, 333
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	4 cut(s)	64, 118, 184, 256
BtsIMutI	CAGTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	152, 332
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	3 cut(s)	123, 355, 365
CviQI	GTAC	1 cut(s)	74
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	201, 354
Eco57I	CTGAAG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	201, 354
ErhI	CCWWGG	2 cut(s)	201, 354
FaeI	CATG	3 cut(s)	126, 358, 368
FaiI	YATR	6 cut(s)	8, 124, 198, 356, 366, 465
FatI	CATG	3 cut(s)	122, 354, 364
FokI	GGATG	4 cut(s)	71, 105, 191, 263
FspBI	CTAG	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	154, 333
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	3 cut(s)	126, 358, 368
HindIII	AAGCTT	2 cut(s)	213, 271
HinfI	GANTC	5 cut(s)	109, 146, 208, 314, 398
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	191, 319
Hpy188III	TCNNGA	2 cut(s)	365, 402
Hpy99I	CGWCG	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	76, 415
HpyCH4V	TGCA	4 cut(s)	80, 182, 235, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 279
HpySE526I	ACGT	2 cut(s)	76, 415
Hsp92II	CATG	3 cut(s)	126, 358, 368
Kzo9I	GATC	1 cut(s)	191
LpnPI	CCDG	8 cut(s)	29, 163, 283, 348, 408, 415, 521, 531
LweI	GCATC	5 cut(s)	30, 169, 217, 241, 514
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	2 cut(s)	76, 415
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	5 cut(s)	314, 338, 417, 449, 510
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	5 cut(s)	342, 349, 446, 486, 550
MlyI	GAGTC	2 cut(s)	155, 202
MmeI	TCCRAC	1 cut(s)	169
MroXI	GAANNNNTTC	2 cut(s)	273, 459
MseI	TTAA	3 cut(s)	39, 63, 485
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	77, 279
NciI	CCSGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	3 cut(s)	126, 358, 368
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	370
PagI	TCATGA	1 cut(s)	364
PdmI	GAANNNNTTC	2 cut(s)	273, 459
PfeI	GAWTC	3 cut(s)	109, 314, 398
PleI	GAGTC	2 cut(s)	154, 202
PpsI	GAGTC	2 cut(s)	154, 202
Ppu21I	YACGTR	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	152, 332
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	39, 63, 485
Sau3AI	GATC	1 cut(s)	191
Sau96I	GGNCC	2 cut(s)	152, 332
SchI	GAGTC	2 cut(s)	155, 202
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	5 cut(s)	30, 169, 217, 241, 514
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	5 cut(s)	342, 349, 446, 486, 550
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	201, 354
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	2 cut(s)	79, 418
TasI	AATT	5 cut(s)	342, 349, 446, 486, 550
TfiI	GAWTC	3 cut(s)	109, 314, 398
Tru1I	TTAA	3 cut(s)	39, 63, 485
Tru9I	TTAA	3 cut(s)	39, 63, 485
TscAI	CASTG	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	5 cut(s)	107, 381, 398, 402, 452
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	349
XmnI	GAANNNNTTC	2 cut(s)	273, 459
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.