Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Reverse (-)

5690225 .. 5692992

Gene Structure 2768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCGTCGTCTCCGTTGACTGCAAATGTTCAGGGTACCAACGCTTCTTTGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGTTTTGGGGGAAATGACTATGCACCCAAGGTACGGAAGCCATACACGATAACAAAAGAGAGAGAGAGATGGACAGATGAAGAGCACAAGAAGTTTGTTGAAGCCTTGAAATTATACGGGCGAGCTTGGAGACGAATAGAAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCATGCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTAGAGCCGATTGTAATACCTCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCGTACCCTCGTAAGTTTGGGAACGAGGCAGATCAAACAAGTAGATCGGTTTCTCCCTCAGAACGTGATACTCAATCTCCAACCTCTGTGTTGTCCACTGTTGGATCAGAAGCATTGTGTTCCCTTGATTCGAGTTCACCCAATCGAAGCTTGTCCCCAGTTTCTTCTGCATCACCACCAGCTGCTCTTACAACCACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCTAGTGAGAGACTCTTAAACAGGGAGAGCTCGATCAAGGAACCAACGAAGCAAAGTCTTAAACTCTTTGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACATATTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAGACACTACCCATAATAAGAAACTCACAAGAAGAACTCTTGAGCTGCTGGATACAAGTCCCTCTTAAGCAAGAAGATGTGGAAAATAGATGTTTGGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGACTGGATCAAACACTGGTTCGGTGGATGATACGGGACACACGGAAAAGACCACAGAACCCGAAACAATGCTATGTCAATGGGAGTTTAAACCAAGTGAGAGGTCTGCATTTTCTGAGCTCAGAAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCATACAAGAAGAGAAAGATGGTAACAGAAGAAGAAGAGCATGAGATTCATCTCCACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

387

Amino Acids

42.98

Weight (kDa)

8.16

Isoelectric Point (pI)

64.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1162
Acc65I	GGTACC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	3 cut(s)	505, 943, 955
AcsI	RAATTY	1 cut(s)	1084
AcuI	CTGAAG	2 cut(s)	624, 641
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	37, 135, 398
AfiI	CCNNNNNNNGG	1 cut(s)	135
AflII	CTTAAG	1 cut(s)	875
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	5 cut(s)	94, 203, 211, 759, 1089
AjuI	GAANNNNNNNTTGG	2 cut(s)	701, 733
AluBI	AGCT	9 cut(s)	227, 339, 543, 575, 610, 625, 666, 855, 1060
AluI	AGCT	9 cut(s)	227, 339, 543, 575, 610, 625, 666, 855, 1060
Alw21I	GWGCWC	4 cut(s)	189, 341, 668, 1062
Alw26I	GTCTC	4 cut(s)	15, 226, 608, 640
AlwI	GGATC	3 cut(s)	505, 943, 955
Ama87I	CYCGRG	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	575, 855
ApoI	RAATTY	1 cut(s)	1084
ArsI	GACNNNNNNTTYG	4 cut(s)	89, 121, 1064, 1096
Asp700I	GAANNNNTTC	1 cut(s)	296
Asp718I	GGTACC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	1100
AsuHPI	GGTGA	3 cut(s)	341, 522, 558
AsuII	TTCGAA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	312
AvaII	GGWCC	1 cut(s)	1100
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	4 cut(s)	257, 341, 668, 1062
BarI	GAAGNNNNNNTAC	2 cut(s)	28, 60
BbsI	GAAGAC	1 cut(s)	716
Bbv12I	GWGCWC	4 cut(s)	189, 341, 668, 1062
BbvI	GCAGC	2 cut(s)	562, 842
BccI	CCATC	3 cut(s)	165, 326, 1114
BciVI	GTATCC	1 cut(s)	855
BcoDI	GTCTC	4 cut(s)	15, 226, 608, 640
BfaI	CTAG	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	875
BfuI	GTATCC	1 cut(s)	855
BisI	GCNGC	2 cut(s)	576, 856
BlsI	GCNGC	2 cut(s)	577, 857
Bme18I	GGWCC	1 cut(s)	1100
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	1100
BmiI	GGNNCC	2 cut(s)	37, 678
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	2 cut(s)	400, 572
BmuI	ACTGGG	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	2 cut(s)	345, 647
Bpu14I	TTCGAA	1 cut(s)	277
BpuEI	CTTGAG	2 cut(s)	632, 871
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	129, 791
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	4 cut(s)	328, 551, 949, 961
BseDI	CCNNGG	2 cut(s)	129, 791
BseGI	GGATG	3 cut(s)	391, 806, 973
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	5 cut(s)	302, 354, 465, 1047, 1075
BseNI	ACTGG	4 cut(s)	328, 551, 949, 961
BseRI	GAGGAG	2 cut(s)	354, 357
BseXI	GCAGC	2 cut(s)	562, 842
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	4 cut(s)	189, 341, 668, 1062
BsiHKCI	CYCGRG	1 cut(s)	312
BslFI	GGGAC	4 cut(s)	357, 532, 854, 990
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	4 cut(s)	15, 226, 608, 640
BsmBI	CGTCTC	2 cut(s)	15, 226
BsmFI	GGGAC	4 cut(s)	357, 532, 854, 990
BsoBI	CYCGRG	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	5 cut(s)	189, 257, 341, 668, 1062
Bsp143I	GATC	6 cut(s)	424, 437, 497, 669, 935, 947
BspACI	CCGC	1 cut(s)	264
BspCNI	CTCAG	5 cut(s)	301, 353, 464, 1048, 1074
BspLI	GGNNCC	2 cut(s)	37, 678
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	3 cut(s)	505, 943, 955
BspQI	GCTCTTC	3 cut(s)	177, 600, 1131
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	35
BspTI	CTTAAG	1 cut(s)	875
BsrI	ACTGG	4 cut(s)	328, 551, 949, 961
BssECI	CCNNGG	2 cut(s)	129, 791
BssMI	GATC	6 cut(s)	424, 437, 497, 669, 935, 947
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	493, 715
Bst6I	CTCTTC	5 cut(s)	177, 600, 748, 1106, 1131
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	875
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	225, 387
BstDEI	CTNAG	6 cut(s)	288, 303, 340, 451, 1056, 1061
BstDSI	CCRYGG	1 cut(s)	791
BstF5I	GGATG	3 cut(s)	391, 806, 973
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	6 cut(s)	427, 440, 500, 672, 938, 950
BstMAI	GTCTC	4 cut(s)	15, 226, 608, 640
BstMBI	GATC	6 cut(s)	424, 437, 497, 669, 935, 947
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNSI	RCATGY	2 cut(s)	251, 739
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	562, 842
BstV2I	GAAGAC	1 cut(s)	716
BstXI	CCANNNNNNTGG	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	855
BtgI	CCRYGG	1 cut(s)	791
BtsCI	GGATG	3 cut(s)	391, 806, 973
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	489, 588, 954
Cac8I	GCNNGC	2 cut(s)	225, 387
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	1100
Csp6I	GTAC	3 cut(s)	36, 134, 397
CviAII	CATG	4 cut(s)	248, 284, 736, 1142
CviQI	GTAC	3 cut(s)	36, 134, 397
DdeI	CTNAG	6 cut(s)	288, 303, 340, 451, 1056, 1061
DpnI	GATC	6 cut(s)	426, 439, 499, 671, 937, 949
DpnII	GATC	6 cut(s)	424, 437, 497, 669, 935, 947
DraI	TTTAAA	1 cut(s)	1030
Eam1104I	CTCTTC	5 cut(s)	177, 600, 748, 1106, 1131
EarI	CTCTTC	5 cut(s)	177, 600, 748, 1106, 1131
Ecl136II	GAGCTC	3 cut(s)	339, 666, 1060
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	4 cut(s)	257, 341, 668, 1062
Eco47I	GGWCC	1 cut(s)	1100
Eco53kI	GAGCTC	3 cut(s)	339, 666, 1060
Eco57I	CTGAAG	2 cut(s)	624, 641
Eco88I	CYCGRG	1 cut(s)	312
EcoICRI	GAGCTC	3 cut(s)	339, 666, 1060
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	4 cut(s)	257, 341, 668, 1062
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	2 cut(s)	15, 226
FaeI	CATG	4 cut(s)	251, 287, 739, 1145
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FaqI	GGGAC	4 cut(s)	357, 532, 854, 990
FatI	CATG	4 cut(s)	247, 283, 735, 1141
Fnu4HI	GCNGC	2 cut(s)	576, 856
FokI	GGATG	3 cut(s)	378, 793, 980
FriOI	GRGCYC	4 cut(s)	257, 341, 668, 1062
Fsp4HI	GCNGC	2 cut(s)	576, 856
FspBI	CTAG	1 cut(s)	639
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	2 cut(s)	576, 856
GsuI	CTGGAG	2 cut(s)	345, 647
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	251, 287, 739, 1145
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	8 cut(s)	274, 521, 616, 648, 728, 908, 1079, 1147
HphI	GGTGA	3 cut(s)	341, 522, 558
Hpy166II	GTNNAC	3 cut(s)	18, 489, 530
Hpy188I	TCNGA	9 cut(s)	273, 291, 454, 502, 621, 727, 1057, 1064, 1078
Hpy188III	TCNNGA	4 cut(s)	314, 850, 912, 1089
Hpy8I	GTNNAC	3 cut(s)	18, 489, 530
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	926
HpyCH4III	ACNGT	2 cut(s)	493, 715
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	7 cut(s)	23, 74, 125, 563, 593, 599, 1049
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	6 cut(s)	288, 303, 340, 451, 1056, 1061
HpySE526I	ACGT	1 cut(s)	457
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	251, 287, 739, 1145
HspAI	GCGC	1 cut(s)	389
KpnI	GGTACC	1 cut(s)	39
Kzo9I	GATC	6 cut(s)	424, 437, 497, 669, 935, 947
LguI	GCTCTTC	3 cut(s)	177, 600, 1131
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	2 cut(s)	562, 842
LweI	GCATC	2 cut(s)	400, 572
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	1123
MalI	GATC	6 cut(s)	426, 439, 499, 671, 937, 949
MboI	GATC	6 cut(s)	424, 437, 497, 669, 935, 947
MhlI	GDGCHC	5 cut(s)	189, 257, 341, 668, 1062
MluCI	AATT	4 cut(s)	89, 212, 777, 1084
MlyI	GAGTC	3 cut(s)	610, 642, 1088
MmeI	TCCRAC	2 cut(s)	475, 497
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	4 cut(s)	653, 696, 876, 1029
MspA1I	CMGCKG	1 cut(s)	575
MspCI	CTTAAG	1 cut(s)	875
MssI	GTTTAAAC	1 cut(s)	1030
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	6 cut(s)	424, 437, 497, 669, 935, 947
NlaIII	CATG	4 cut(s)	251, 287, 739, 1145
NlaIV	GGNNCC	2 cut(s)	37, 678
NspI	RCATGY	2 cut(s)	251, 739
NspV	TTCGAA	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	312
PciI	ACATGT	1 cut(s)	247
PciSI	GCTCTTC	3 cut(s)	177, 600, 1131
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	5 cut(s)	274, 521, 728, 908, 1147
PkrI	GCNGC	2 cut(s)	577, 857
PleI	GAGTC	3 cut(s)	610, 642, 1087
PmeI	GTTTAAAC	1 cut(s)	1030
PpsI	GAGTC	3 cut(s)	610, 642, 1087
PscI	ACATGT	1 cut(s)	247
PsiI	TTATAA	1 cut(s)	1162
Psp124BI	GAGCTC	3 cut(s)	341, 668, 1062
PspN4I	GGNNCC	2 cut(s)	37, 678
PspPI	GGNCC	1 cut(s)	1100
PstI	CTGCAG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	3 cut(s)	37, 135, 398
RsaNI	GTAC	3 cut(s)	36, 134, 397
SacI	GAGCTC	3 cut(s)	341, 668, 1062
SapI	GCTCTTC	3 cut(s)	177, 600, 1131
SaqAI	TTAA	4 cut(s)	653, 696, 876, 1029
SatI	GCNGC	2 cut(s)	576, 856
Sau3AI	GATC	6 cut(s)	424, 437, 497, 669, 935, 947
Sau96I	GGNCC	1 cut(s)	1100
SchI	GAGTC	3 cut(s)	610, 642, 1088
SduI	GDGCHC	5 cut(s)	189, 257, 341, 668, 1062
SfaNI	GCATC	2 cut(s)	400, 572
SfcI	CTRYAG	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	312
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	1 cut(s)	1100
SlaI	CTCGAG	1 cut(s)	312
SmlI	CTYRAG	4 cut(s)	312, 611, 850, 875
SmoI	CTYRAG	4 cut(s)	312, 611, 850, 875
Sse9I	AATT	4 cut(s)	89, 212, 777, 1084
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	639
SstI	GAGCTC	3 cut(s)	341, 668, 1062
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	493, 715
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	6 cut(s)	277, 313, 524, 538, 668, 941
TasI	AATT	4 cut(s)	89, 212, 777, 1084
TfiI	GAWTC	5 cut(s)	274, 521, 728, 908, 1147
Tru1I	TTAA	4 cut(s)	653, 696, 876, 1029
Tru9I	TTAA	4 cut(s)	653, 696, 876, 1029
TscAI	CASTG	3 cut(s)	496, 595, 961
TseI	GCWGC	2 cut(s)	575, 855
TspDTI	ATGAA	3 cut(s)	78, 195, 1139
TspGWI	ACGGA	4 cut(s)	151, 384, 808, 998
TspRI	CASTG	3 cut(s)	496, 595, 961
Vha464I	CTTAAG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	1100
XapI	RAATTY	1 cut(s)	1084
XceI	RCATGY	2 cut(s)	251, 739
XhoI	CTCGAG	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.