Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Reverse (-)

35033723 .. 35037073

Gene Structure 3351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG324300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCGTCCTTACCCCCGAAAACATGTTCACCCTCTTCATACGGAAACCTCTAATCTAGAGCAGCCAATAAGGTCTGCACCTAAAAAATTATCAGTTTCTGAGCTTGAAAACCAATCTCCAACATCAGTATTATCTCCAATGGGCTCAGATACAATCGGTTCCTCTGATTCAAGTACACCTAGTGGTAGTCTATCCCCCGTTTCATTGGTTGCTGGTGTCCAAAATGAGGCCATAAATCATTCTGAACAACAGCCATCACCACAGGAAAGTAGGACTTCATTATCTGCTGTAGCAGAAGATGGCCCACTTCCTGACAAGAAATTTTCTGTGAAGCTGGAGTTATTTCCCACAGACAATGTCTATGATAGTGGCGGTTCAGCTGATGAGGCATCTGCCAGAAGCCTTAAGCTTTTCGGAAGGACTGTATTGGTCACAGACTCCCACCGACCTCTCTCTGGTGGAACTTGCAAGTCAATCTCTTATGACACGCAAGAGGAAAAATGTGGGCAAACATCAATACCATGTAACTTTATGCCTATTCAATGTGCATTTGGGAATGTGGAACATGTTTGGAATAGACATCAACTCATCCATTTTCCTCAATGTCAGAATGAGAATTGGAATCGATCTGGTTCTTCTAATCTTATACCATGGTGTACCTTAGGTGCAGATTCATCCGTTCCATTTCTTCCATTCAGTAACCAGCAGACAATGAAATCATATTTTGATTGTAACCTTGAAGATCCCCACGATAAAGATGTTCAGAAAGAAAGTTCTTGGAACGGTTCAGATGCTGGATCAGTAAGTGATGAGGAAAATGGAGGCAAATGTTTAGATGTAGAGATGCATGGGGATCTGCAAATTTCTGAAAAAGAAAAAGTTGAAGAGCCGAATTCGGTTTTTCAATTTAAGGCGAGTAAAAACTCAGCCTTCTCTAAACTGAAGCCTGAAAAGTGTAGAAAAGGATTTGTTCCATATAAAAGATGTATGGTGTATGCAGATGCTCGGTCCTCAACTTCAGGTCAAGACAGGGATCAGAAAAGAGTCCACCTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

352

Amino Acids

38.79

Weight (kDa)

5.8

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	4 cut(s)	737, 805, 861, 1041
AcsI	RAATTY	3 cut(s)	320, 861, 892
AcuI	CTGAAG	2 cut(s)	962, 1002
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	175, 658
AfiI	CCNNNNNNNGG	2 cut(s)	226, 455
AflII	CTTAAG	1 cut(s)	404
AflIII	ACRYGT	2 cut(s)	22, 565
AgsI	TTSAA	6 cut(s)	107, 171, 542, 740, 884, 905
AluBI	AGCT	4 cut(s)	103, 334, 380, 409
AluI	AGCT	4 cut(s)	103, 334, 380, 409
AlwI	GGATC	4 cut(s)	737, 805, 861, 1041
AlwNI	CAGNNNCTG	2 cut(s)	98, 794
AoxI	GGCC	2 cut(s)	228, 301
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	3 cut(s)	320, 861, 892
AspS9I	GGNCC	2 cut(s)	302, 1008
AsuHPI	GGTGA	2 cut(s)	20, 249
AvaII	GGWCC	1 cut(s)	1008
AxyI	CCTNAGG	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	262, 293
BfaI	CTAG	2 cut(s)	56, 180
BfmI	CTRYAG	1 cut(s)	288
BfrI	CTTAAG	1 cut(s)	404
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	1008
BmgT120I	GGNCC	2 cut(s)	302, 1008
BmiI	GGNNCC	1 cut(s)	160
BmsI	GCATC	4 cut(s)	398, 781, 834, 991
BpmI	CTGGAG	1 cut(s)	356
Bsa29I	ATCGAT	1 cut(s)	625
BsaJI	CCNNGG	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 455
Bse21I	CCTNAGG	1 cut(s)	661
BseCI	ATCGAT	1 cut(s)	625
BseDI	CCNNGG	1 cut(s)	650
BseGI	GGATG	2 cut(s)	588, 674
BseLI	CCNNNNNNNGG	2 cut(s)	226, 455
BseMII	CTCAG	3 cut(s)	90, 159, 939
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	2 cut(s)	60, 687
BshFI	GGCC	2 cut(s)	230, 303
BshVI	ATCGAT	1 cut(s)	625
BslI	CCNNNNNNNGG	2 cut(s)	226, 455
BsnI	GGCC	2 cut(s)	230, 303
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	5 cut(s)	626, 742, 797, 853, 1033
Bsp19I	CCATGG	1 cut(s)	650
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	2 cut(s)	230, 303
BspCNI	CTCAG	3 cut(s)	91, 158, 938
BspDI	ATCGAT	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	4 cut(s)	737, 805, 861, 1041
BspQI	GCTCTTC	1 cut(s)	879
BspTI	CTTAAG	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	650
BssMI	GATC	5 cut(s)	626, 742, 797, 853, 1033
BssT1I	CCWWGG	1 cut(s)	650
Bst4CI	ACNGT	2 cut(s)	424, 785
Bst6I	CTCTTC	2 cut(s)	39, 879
BstAFI	CTTAAG	1 cut(s)	404
BstDEI	CTNAG	4 cut(s)	99, 145, 661, 925
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	2 cut(s)	588, 674
BstKTI	GATC	5 cut(s)	629, 745, 800, 856, 1036
BstMBI	GATC	5 cut(s)	626, 742, 797, 853, 1033
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNSI	RCATGY	2 cut(s)	26, 569
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	2 cut(s)	742, 853
BstYI	RGATCY	2 cut(s)	742, 853
Bsu15I	ATCGAT	1 cut(s)	625
Bsu36I	CCTNAGG	1 cut(s)	661
BsuRI	GGCC	2 cut(s)	230, 303
BsuTUI	ATCGAT	1 cut(s)	625
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	2 cut(s)	588, 674
CaiI	CAGNNNCTG	2 cut(s)	98, 794
Cfr13I	GGNCC	2 cut(s)	302, 1008
ClaI	ATCGAT	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	174, 657
CviAII	CATG	5 cut(s)	23, 522, 566, 651, 848
CviQI	GTAC	2 cut(s)	174, 657
DdeI	CTNAG	4 cut(s)	99, 145, 661, 925
DpnI	GATC	5 cut(s)	628, 744, 799, 855, 1035
DpnII	GATC	5 cut(s)	626, 742, 797, 853, 1033
DraIII	CACNNNGTG	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	39, 879
EarI	CTCTTC	2 cut(s)	39, 879
Eco130I	CCWWGG	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	1008
Eco57I	CTGAAG	2 cut(s)	962, 1002
Eco81I	CCTNAGG	1 cut(s)	661
EcoRI	GAATTC	1 cut(s)	892
EcoT14I	CCWWGG	1 cut(s)	650
EcoT22I	ATGCAT	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	650
FaeI	CATG	5 cut(s)	26, 525, 569, 654, 851
FalI	AAGNNNNNCTT	2 cut(s)	259, 291
FatI	CATG	5 cut(s)	22, 521, 565, 650, 847
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	2 cut(s)	575, 661
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	2 cut(s)	56, 180
GluI	GCNGC	1 cut(s)	62
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	230, 303
Hin1II	CATG	5 cut(s)	26, 525, 569, 654, 851
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	5 cut(s)	167, 437, 622, 671, 1044
HphI	GGTGA	2 cut(s)	20, 249
Hpy166II	GTNNAC	4 cut(s)	28, 176, 657, 1048
Hpy188III	TCNNGA	3 cut(s)	56, 311, 1025
Hpy8I	GTNNAC	4 cut(s)	28, 176, 657, 1048
HpyAV	CCTTC	2 cut(s)	411, 940
HpyCH4III	ACNGT	2 cut(s)	424, 785
HpyCH4V	TGCA	7 cut(s)	77, 468, 548, 668, 847, 859, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	4 cut(s)	99, 145, 661, 925
Hsp92II	CATG	5 cut(s)	26, 525, 569, 654, 851
Kzo9I	GATC	5 cut(s)	626, 742, 797, 853, 1033
LguI	GCTCTTC	1 cut(s)	879
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	4 cut(s)	398, 781, 834, 991
MaeI	CTAG	2 cut(s)	56, 180
MaeIII	GTNAC	4 cut(s)	430, 524, 698, 731
MalI	GATC	5 cut(s)	628, 744, 799, 855, 1035
MboI	GATC	5 cut(s)	626, 742, 797, 853, 1033
MboII	GAAGA	6 cut(s)	26, 308, 627, 680, 752, 896
MflI	RGATCY	2 cut(s)	742, 853
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	6 cut(s)	86, 320, 616, 861, 892, 905
MlyI	GAGTC	2 cut(s)	431, 1053
MmeI	TCCRAC	1 cut(s)	143
Mph1103I	ATGCAT	1 cut(s)	849
MseI	TTAA	2 cut(s)	405, 909
MspA1I	CMGCKG	1 cut(s)	380
MspCI	CTTAAG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	386
NcoI	CCATGG	1 cut(s)	650
NdeII	GATC	5 cut(s)	626, 742, 797, 853, 1033
NlaIII	CATG	5 cut(s)	26, 525, 569, 654, 851
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	849
NspI	RCATGY	2 cut(s)	26, 569
PciI	ACATGT	2 cut(s)	22, 565
PciSI	GCTCTTC	1 cut(s)	879
PfeI	GAWTC	3 cut(s)	167, 622, 671
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	2 cut(s)	431, 1052
PpsI	GAGTC	2 cut(s)	431, 1052
PscI	ACATGT	2 cut(s)	22, 565
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	302, 1008
PstNI	CAGNNNCTG	2 cut(s)	98, 794
PsuI	RGATCY	2 cut(s)	742, 853
PsyI	GACNNNGTC	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	175, 658
RsaNI	GTAC	2 cut(s)	174, 657
SapI	GCTCTTC	1 cut(s)	879
SaqAI	TTAA	2 cut(s)	405, 909
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	5 cut(s)	626, 742, 797, 853, 1033
Sau96I	GGNCC	2 cut(s)	302, 1008
SchI	GAGTC	2 cut(s)	431, 1053
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	4 cut(s)	398, 781, 834, 991
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	1008
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	6 cut(s)	86, 320, 616, 861, 892, 905
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	56, 180
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	2 cut(s)	424, 785
TaqI	TCGA	1 cut(s)	625
TaqII	GACCGA	1 cut(s)	996
TasI	AATT	6 cut(s)	86, 320, 616, 861, 892, 905
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	167, 622, 671
Tru1I	TTAA	2 cut(s)	405, 909
Tru9I	TTAA	2 cut(s)	405, 909
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	5 cut(s)	26, 192, 267, 663, 728
TspGWI	ACGGA	2 cut(s)	56, 667
Tth111I	GACNNNGTC	1 cut(s)	356
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	1008
XapI	RAATTY	3 cut(s)	320, 861, 892
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	2 cut(s)	26, 569
XspI	CTAG	2 cut(s)	56, 180
Zsp2I	ATGCAT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.