Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Reverse (-)

34519645 .. 34522209

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGACCCAATGGGTTGTGATGATGATGATGATCAATATGGTGAGATATCCTTTTGTCCTGCTGCTGTTGGGGTCCAATTGAAGGATCAATTATCTTCTGGAAATGACTATGCTCCCAAGGTGAGGAAACCATACACGATCACGAAACAGAGAGAGAGATGGACAGAGGAAGAGCATAACAAATTCCTTGAAGCTCTAAAACTCCATGGTCGGGCATGGCGAAAGATACAAGACCATGTTGGCAGCAAGACTGCGGTTCAGATTCGAAGTCATGCTCAGAAATTCTTTTCTAAGGTTGCTCGTGACCCAGATGGTATCAACACAAGCTCTGCAGATCCCATTGACATTCCTCCTCCTAGGCCAAAACGGAAACCAATGCAGCAGCCAATAAGGTCTGCACCTAAAAAATTATCAGTTTCTGAGATTGAAAACCAATCTCCAACATCAGTATTATCTCCAATGGGCTCAGATACAATCGGTTCTCTGATTCAAGTACACCTAGTGGTAAAGCTGGAGTTATTTCCCACAGACAATGTCTATGATAGTGGCGGTTCGGCTGATGAGGCATCTGCCAGAAGCCTCAAGCTTTTCGGAAGGACTGTATTGGTCACAGACTCCCACCGACCTCTCTCTGGTGGAACTTGCAAGTCAATCTCTTATGACACGCAAGAGGAGAAATGTGGGCAAACATCAATACCATATAACTTTATGCCTATTCAATGTGCATTTGGGAATGTGGAACATGTTTGGAATAGACATCAACTCATCCATTTTCCTCAATGTCAGAATGAGAATTGGAATCGATCTGGTTCTTCTAATCTTATACCATGGTGTACCTTAGGTGCAGATTCATCCGTTCCATTTCTTCCATTCAGTAACCAGCAGACAATGAAATCATATTTTGATTGTAACCTTGAAGATCCCCACGATAAAGATGTTCAGAAAGAAAGTTCTTGGAACGGTTCAGATGCTGGATCAGTAAGTGATGAGGAAAATGGAGGCAAATGTTTAGATGTAGAGATGCATGGGGATCTGCAAATTTCTGAAAAAGAAAAAGTTGAAGAGCCGAATTCGGTTTTTCAATTTAAGGCGAGTAAAAACTCAGCCTTCTCTAAACTGAAGCCTGAAAAGTGTAAAAAAGGATTTGTACCATATAAAAGATGTATGGTGGATGCAGATGCTCGGTACTCAACTTCAGGTCAAGACAGGGATCAGAAAAGAGTCCACCTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

411

Amino Acids

46.04

Weight (kDa)

6.33

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	51 - 94	6.3e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	254, 549
AclWI	GGATC	6 cut(s)	93, 329, 914, 982, 1038, 1218
AcsI	RAATTY	4 cut(s)	182, 281, 1038, 1069
AcuI	CTGAAG	2 cut(s)	1139, 1179
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	4 cut(s)	495, 835, 1149, 1187
AfiI	CCNNNNNNNGG	4 cut(s)	82, 123, 211, 632
AflIII	ACRYGT	1 cut(s)	742
AgsI	TTSAA	8 cut(s)	82, 191, 428, 491, 719, 917, 1061, 1082
AluBI	AGCT	4 cut(s)	194, 327, 511, 586
AluI	AGCT	4 cut(s)	194, 327, 511, 586
AlwI	GGATC	6 cut(s)	93, 329, 914, 982, 1038, 1218
AlwNI	CAGNNNCTG	2 cut(s)	419, 971
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	4 cut(s)	62, 243, 379, 382
ApoI	RAATTY	4 cut(s)	182, 281, 1038, 1069
AspA2I	CCTAGG	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	4, 73
AsuHPI	GGTGA	2 cut(s)	53, 133
AsuII	TTCGAA	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	4, 73
AvrII	CCTAGG	1 cut(s)	356
AxyI	CCTNAGG	1 cut(s)	838
BanII	GRGCYC	1 cut(s)	467
BauI	CACGAG	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	49, 255, 391, 394
BccI	CCATC	2 cut(s)	153, 305
BclI	TGATCA	1 cut(s)	31
BfaI	CTAG	2 cut(s)	357, 500
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	4 cut(s)	63, 244, 380, 383
BlnI	CCTAGG	1 cut(s)	356
BlsI	GCNGC	4 cut(s)	64, 245, 381, 384
Bme18I	GGWCC	2 cut(s)	4, 73
BmgT120I	GGNCC	2 cut(s)	4, 73
BmiI	GGNNCC	2 cut(s)	6, 74
BmsI	GCATC	5 cut(s)	575, 958, 1011, 1162, 1168
BpmI	CTGGAG	1 cut(s)	533
Bpu14I	TTCGAA	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	566
Bsa29I	ATCGAT	1 cut(s)	802
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	4 cut(s)	117, 205, 356, 827
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 123, 211, 632
Bse21I	CCTNAGG	1 cut(s)	838
Bse8I	GATNNNNATC	1 cut(s)	30
BseCI	ATCGAT	1 cut(s)	802
BseDI	CCNNGG	4 cut(s)	117, 205, 356, 827
BseGI	GGATG	3 cut(s)	765, 851, 1177
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	4 cut(s)	82, 123, 211, 632
BseMII	CTCAG	4 cut(s)	290, 411, 480, 1116
BseRI	GAGGAG	2 cut(s)	342, 686
BseXI	GCAGC	4 cut(s)	49, 255, 391, 394
BsgI	GTGCAG	2 cut(s)	381, 864
BshFI	GGCC	1 cut(s)	361
BshVI	ATCGAT	1 cut(s)	802
BslI	CCNNNNNNNGG	4 cut(s)	82, 123, 211, 632
BsnI	GGCC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	9 cut(s)	31, 85, 138, 334, 803, 919, 974, 1030, 1210
Bsp19I	CCATGG	2 cut(s)	205, 827
BspACI	CCGC	2 cut(s)	254, 549
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	4 cut(s)	289, 412, 479, 1115
BspDI	ATCGAT	1 cut(s)	802
BspLI	GGNNCC	2 cut(s)	6, 74
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	6 cut(s)	93, 329, 914, 982, 1038, 1218
BspQI	GCTCTTC	2 cut(s)	165, 1056
BspT104I	TTCGAA	1 cut(s)	265
BssECI	CCNNGG	4 cut(s)	117, 205, 356, 827
BssMI	GATC	9 cut(s)	31, 85, 138, 334, 803, 919, 974, 1030, 1210
BssSI	CACGAG	1 cut(s)	300
BssT1I	CCWWGG	4 cut(s)	117, 205, 356, 827
Bst2BI	CACGAG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	601, 962
Bst6I	CTCTTC	2 cut(s)	165, 1056
BstBI	TTCGAA	1 cut(s)	265
BstDEI	CTNAG	6 cut(s)	276, 291, 420, 466, 838, 1102
BstDSI	CCRYGG	2 cut(s)	205, 827
BstF5I	GGATG	3 cut(s)	765, 851, 1177
BstKTI	GATC	9 cut(s)	34, 88, 141, 337, 806, 922, 977, 1033, 1213
BstMBI	GATC	9 cut(s)	31, 85, 138, 334, 803, 919, 974, 1030, 1210
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	746
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	49, 255, 391, 394
BstX2I	RGATCY	3 cut(s)	334, 919, 1030
BstYI	RGATCY	3 cut(s)	334, 919, 1030
Bsu15I	ATCGAT	1 cut(s)	802
Bsu36I	CCTNAGG	1 cut(s)	838
BsuRI	GGCC	1 cut(s)	361
BsuTUI	ATCGAT	1 cut(s)	802
BtgI	CCRYGG	2 cut(s)	205, 827
BtsCI	GGATG	3 cut(s)	765, 851, 1177
CaiI	CAGNNNCTG	2 cut(s)	419, 971
Cfr13I	GGNCC	2 cut(s)	4, 73
ClaI	ATCGAT	1 cut(s)	802
Csp6I	GTAC	4 cut(s)	494, 834, 1148, 1186
CviAII	CATG	7 cut(s)	206, 216, 236, 272, 743, 828, 1025
CviQI	GTAC	4 cut(s)	494, 834, 1148, 1186
DdeI	CTNAG	6 cut(s)	276, 291, 420, 466, 838, 1102
DpnI	GATC	9 cut(s)	33, 87, 140, 336, 805, 921, 976, 1032, 1212
DpnII	GATC	9 cut(s)	31, 85, 138, 334, 803, 919, 974, 1030, 1210
DraIII	CACNNNGTG	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	165, 1056
EarI	CTCTTC	2 cut(s)	165, 1056
Eco130I	CCWWGG	4 cut(s)	117, 205, 356, 827
Eco24I	GRGCYC	1 cut(s)	467
Eco32I	GATATC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	4, 73
Eco57I	CTGAAG	2 cut(s)	1139, 1179
Eco81I	CCTNAGG	1 cut(s)	838
EcoRI	GAATTC	1 cut(s)	1069
EcoRV	GATATC	1 cut(s)	48
EcoT14I	CCWWGG	4 cut(s)	117, 205, 356, 827
EcoT22I	ATGCAT	1 cut(s)	1026
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	4 cut(s)	117, 205, 356, 827
FaeI	CATG	7 cut(s)	209, 219, 239, 275, 746, 831, 1028
FatI	CATG	7 cut(s)	205, 215, 235, 271, 742, 827, 1024
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	63, 244, 380, 383
FokI	GGATG	3 cut(s)	752, 838, 1184
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	4 cut(s)	63, 244, 380, 383
FspBI	CTAG	2 cut(s)	357, 500
GluI	GCNGC	4 cut(s)	63, 244, 380, 383
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	361
Hin1II	CATG	7 cut(s)	209, 219, 239, 275, 746, 831, 1028
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	6 cut(s)	262, 487, 614, 799, 848, 1221
HphI	GGTGA	2 cut(s)	53, 133
Hpy166II	GTNNAC	3 cut(s)	496, 834, 1225
Hpy188III	TCNNGA	4 cut(s)	99, 142, 302, 1202
Hpy8I	GTNNAC	3 cut(s)	496, 834, 1225
HpyAV	CCTTC	3 cut(s)	76, 588, 1117
HpyCH4III	ACNGT	2 cut(s)	601, 962
HpyCH4V	TGCA	9 cut(s)	332, 379, 398, 645, 725, 845, 1024, 1036, 1175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	6 cut(s)	276, 291, 420, 466, 838, 1102
Hsp92II	CATG	7 cut(s)	209, 219, 239, 275, 746, 831, 1028
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	9 cut(s)	31, 85, 138, 334, 803, 919, 974, 1030, 1210
LguI	GCTCTTC	2 cut(s)	165, 1056
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	4 cut(s)	49, 255, 391, 394
LweI	GCATC	5 cut(s)	575, 958, 1011, 1162, 1168
MaeI	CTAG	2 cut(s)	357, 500
MaeIII	GTNAC	4 cut(s)	302, 607, 875, 908
MalI	GATC	9 cut(s)	33, 87, 140, 336, 805, 921, 976, 1032, 1212
MboI	GATC	9 cut(s)	31, 85, 138, 334, 803, 919, 974, 1030, 1210
MboII	GAAGA	6 cut(s)	87, 182, 804, 857, 929, 1073
MfeI	CAATTG	1 cut(s)	77
MflI	RGATCY	3 cut(s)	334, 919, 1030
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	9 cut(s)	77, 89, 182, 281, 407, 793, 1038, 1069, 1082
MlyI	GAGTC	2 cut(s)	608, 1230
MmeI	TCCRAC	1 cut(s)	464
Mph1103I	ATGCAT	1 cut(s)	1026
MseI	TTAA	1 cut(s)	1086
MunI	CAATTG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	563
NcoI	CCATGG	2 cut(s)	205, 827
NdeII	GATC	9 cut(s)	31, 85, 138, 334, 803, 919, 974, 1030, 1210
NlaIII	CATG	7 cut(s)	209, 219, 239, 275, 746, 831, 1028
NlaIV	GGNNCC	2 cut(s)	6, 74
NmuCI	GTSAC	2 cut(s)	302, 607
NsiI	ATGCAT	1 cut(s)	1026
NspI	RCATGY	1 cut(s)	746
NspV	TTCGAA	1 cut(s)	265
PciI	ACATGT	1 cut(s)	742
PciSI	GCTCTTC	2 cut(s)	165, 1056
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PfeI	GAWTC	4 cut(s)	262, 487, 799, 848
PflFI	GACNNNGTC	1 cut(s)	533
PkrI	GCNGC	4 cut(s)	64, 245, 381, 384
PleI	GAGTC	2 cut(s)	608, 1229
PpsI	GAGTC	2 cut(s)	608, 1229
PscI	ACATGT	1 cut(s)	742
PspN4I	GGNNCC	2 cut(s)	6, 74
PspPI	GGNCC	2 cut(s)	4, 73
PstI	CTGCAG	1 cut(s)	334
PstNI	CAGNNNCTG	2 cut(s)	419, 971
PsuI	RGATCY	3 cut(s)	334, 919, 1030
PsyI	GACNNNGTC	1 cut(s)	533
RsaI	GTAC	4 cut(s)	495, 835, 1149, 1187
RsaNI	GTAC	4 cut(s)	494, 834, 1148, 1186
SapI	GCTCTTC	2 cut(s)	165, 1056
SaqAI	TTAA	1 cut(s)	1086
SatI	GCNGC	4 cut(s)	63, 244, 380, 383
Sau3AI	GATC	9 cut(s)	31, 85, 138, 334, 803, 919, 974, 1030, 1210
Sau96I	GGNCC	2 cut(s)	4, 73
SchI	GAGTC	2 cut(s)	608, 1230
SduI	GDGCHC	1 cut(s)	467
SfaNI	GCATC	5 cut(s)	575, 958, 1011, 1162, 1168
SfcI	CTRYAG	1 cut(s)	330
SfuI	TTCGAA	1 cut(s)	265
SinI	GGWCC	2 cut(s)	4, 73
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	9 cut(s)	77, 89, 182, 281, 407, 793, 1038, 1069, 1082
SsiI	CCGC	2 cut(s)	254, 549
SspMI	CTAG	2 cut(s)	357, 500
StyI	CCWWGG	4 cut(s)	117, 205, 356, 827
TaaI	ACNGT	2 cut(s)	601, 962
TaqI	TCGA	2 cut(s)	265, 802
TasI	AATT	9 cut(s)	77, 89, 182, 281, 407, 793, 1038, 1069, 1082
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	4 cut(s)	262, 487, 799, 848
Tru1I	TTAA	1 cut(s)	1086
Tru9I	TTAA	1 cut(s)	1086
TseFI	GTSAC	2 cut(s)	302, 607
TseI	GCWGC	4 cut(s)	62, 243, 379, 382
Tsp45I	GTSAC	2 cut(s)	302, 607
TspDTI	ATGAA	2 cut(s)	840, 905
TspGWI	ACGGA	2 cut(s)	382, 844
Tth111I	GACNNNGTC	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	4, 73
XapI	RAATTY	4 cut(s)	182, 281, 1038, 1069
XceI	RCATGY	1 cut(s)	746
XmaJI	CCTAGG	1 cut(s)	356
XspI	CTAG	2 cut(s)	357, 500
Zsp2I	ATGCAT	1 cut(s)	1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.