Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Forward (+)

14134834 .. 14137843

Gene Structure 3010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGCGTCCCCAGCTATGGCACCAGTTCAAGATGATGATGATGATCAATATGGTGAGATTTCCTTTAGTCCTGATGCTGTTGGGGTCCAATTGAAGGATCACTTATCTTCTGGAAATGACTATGCTCCCAAGGTGAGGAAACCATACACGATCACGAAACAGAGAGAGAGATGGACGGAGGAAGAGCATAACAAATTCCTTGAAGCTCTAAAACTCCATGGTCGGGCATGGCGAAAGATACAAGACCATGTTGGCAGCAAGACTGCGGTTCAGATTCGAAGTCATGCTCAGAAATTCTTTTCTAAGGTTGCTCGTGACCCAGATGGCATCTTCACAAGCTCTGCAGATCCCATTGACATTCCTCCTCCTAGGCCAAAACGGAAACCAATGCGTCCTTACCCCCGAAAACATGTTCACCCTCTTCATACAGAAACCTCTAATCTAGAGCAGCCAATAAGATCTGCACCTACAAAATTATCAGTTTCTGAGCTTGAAAACCAATCTCCAACATCAGTATTATCTCCAATGGGCTCAGATACAATCGGTTCCTCTGATTCAAGTACACCTAGTGATAGTCTATCCCCTGTTTCATTGGTTGCTGGTGTCCAAAATGAGGCCATAAATCATTCTGAGCGACAGCCATCACCAGAGGAAAGTAGGACTTCATTATCAGCTGTAGCAGAAGATGACCCACTACCTGACAAGAAATTTTCTGTGAAGCTGGAGTTATTTCCCACAGACAATGTCTATGATAGTGGCGGTTCAGCTGATCAGGCATCTGCCAGAAGCCTTAAGCTTTTCGGAAGGACTGTATTGGTCACAGACTCCCACCGACCTCTCTCTGGTGGAACTTGCAAATCAATCTCTTATGACACGCAAGAGGAGAAATGTGGGCAAACATCAATACCATGTAACTTTATGCCTATTCAATGTGCATTTGGGAATGTGGAACATGTTTGGAATAGACATCAACTCATCCATTTTCCTCAATGTCAGAATGAGAATTGGAATCGATCTGGTTCTTCTAATCTTTTACCATGGTGTACCTTAGGTGCAGATTCATCCGTTCCATTTCTTCCATTCAGTAACCAGCAGACAATGAAATCATTTTTTGATTGTAACCTTGAAGATCCCCACGATAAAGATGTTCAGAAAGAAAGTTCTTGGAACGGTTCAGATGCTGGATCAGTAAGTGATGAGGAAAATGGAGGCAAATGTTTAGATGTAGAGATGCATGGTGATCTGCAAATTTCTGAAAAAGAAAAAGTTGAAGAGCCGAATTCGGTTTTTCAATTTAAGGCGAGTAAAAACTCAGCCTTCTCTAAACTGAAGCCTGAAAAGTGTAAAAAAGGATTTGTACCATATAAAAGATGTATGGTCGATGCAGATGCTCAGTCCTCAACTTCAGGTCAAGACAGGGATCAGAAAAGAGTCCACCTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

481

Amino Acids

53.39

Weight (kDa)

5.92

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	55 - 98	7.7e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AciI	CCGC	2 cut(s)	266, 759
AclWI	GGATC	5 cut(s)	105, 341, 1124, 1192, 1428
AcsI	RAATTY	5 cut(s)	194, 293, 707, 1248, 1279
AcuI	CTGAAG	2 cut(s)	1349, 1389
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	569
AfaI	GTAC	3 cut(s)	562, 1045, 1359
AfiI	CCNNNNNNNGG	6 cut(s)	16, 94, 135, 223, 613, 842
AflII	CTTAAG	1 cut(s)	791
AflIII	ACRYGT	2 cut(s)	409, 952
AgsI	TTSAA	9 cut(s)	29, 94, 203, 494, 558, 929, 1127, 1271, 1292
AluBI	AGCT	8 cut(s)	14, 206, 339, 490, 674, 721, 767, 796
AluI	AGCT	8 cut(s)	14, 206, 339, 490, 674, 721, 767, 796
AlwI	GGATC	5 cut(s)	105, 341, 1124, 1192, 1428
AlwNI	CAGNNNCTG	2 cut(s)	485, 1181
AoxI	GGCC	2 cut(s)	371, 615
ApeKI	GCWGC	2 cut(s)	255, 448
ApoI	RAATTY	5 cut(s)	194, 293, 707, 1248, 1279
AspA2I	CCTAGG	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	5 cut(s)	65, 145, 407, 636, 1250
AsuII	TTCGAA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	85
AvrII	CCTAGG	1 cut(s)	368
AxyI	CCTNAGG	1 cut(s)	1048
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	533
BauI	CACGAG	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	267, 460
BccI	CCATC	3 cut(s)	165, 317, 649
BcgI	CGANNNNNNTGC	2 cut(s)	1370, 1404
BclI	TGATCA	2 cut(s)	43, 769
BfaI	CTAG	3 cut(s)	369, 443, 567
BfmI	CTRYAG	2 cut(s)	342, 675
BfrI	CTTAAG	1 cut(s)	791
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	2 cut(s)	256, 449
BlnI	CCTAGG	1 cut(s)	368
BlsI	GCNGC	2 cut(s)	257, 450
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	3 cut(s)	21, 86, 547
BmsI	GCATC	7 cut(s)	64, 336, 785, 1168, 1221, 1372, 1378
BpmI	CTGGAG	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	1012
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	129, 217, 368, 1037
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 94, 135, 223, 613, 842
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	1048
Bse8I	GATNNNNATC	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	1012
BseDI	CCNNGG	4 cut(s)	129, 217, 368, 1037
BseGI	GGATG	2 cut(s)	975, 1061
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	6 cut(s)	16, 94, 135, 223, 613, 842
BseMII	CTCAG	6 cut(s)	302, 477, 546, 621, 1326, 1406
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	354, 896
BseXI	GCAGC	2 cut(s)	267, 460
BseYI	CCCAGC	1 cut(s)	10
BsgI	GTGCAG	2 cut(s)	447, 1074
BshFI	GGCC	2 cut(s)	373, 617
BshNI	GGYRCC	1 cut(s)	19
BshVI	ATCGAT	1 cut(s)	1012
BslI	CCNNNNNNNGG	6 cut(s)	16, 94, 135, 223, 613, 842
BsnI	GGCC	2 cut(s)	373, 617
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp19I	CCATGG	2 cut(s)	217, 1037
BspACI	CCGC	2 cut(s)	266, 759
BspANI	GGCC	2 cut(s)	373, 617
BspCNI	CTCAG	6 cut(s)	301, 478, 545, 622, 1325, 1405
BspDI	ATCGAT	1 cut(s)	1012
BspLI	GGNNCC	3 cut(s)	21, 86, 547
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	5 cut(s)	105, 341, 1124, 1192, 1428
BspQI	GCTCTTC	2 cut(s)	177, 1266
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	791
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	4 cut(s)	129, 217, 368, 1037
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	4 cut(s)	129, 217, 368, 1037
Bst2BI	CACGAG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	811, 1172
Bst6I	CTCTTC	3 cut(s)	177, 426, 1266
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	791
BstBI	TTCGAA	1 cut(s)	277
BstDEI	CTNAG	8 cut(s)	288, 303, 486, 532, 630, 1048, 1312, 1392
BstDSI	CCRYGG	2 cut(s)	217, 1037
BstF5I	GGATG	2 cut(s)	975, 1061
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 773
BstNSI	RCATGY	2 cut(s)	413, 956
BstSFI	CTRYAG	2 cut(s)	342, 675
BstV1I	GCAGC	2 cut(s)	267, 460
BstX2I	RGATCY	3 cut(s)	346, 458, 1129
BstYI	RGATCY	3 cut(s)	346, 458, 1129
Bsu15I	ATCGAT	1 cut(s)	1012
Bsu36I	CCTNAGG	1 cut(s)	1048
BsuRI	GGCC	2 cut(s)	373, 617
BsuTUI	ATCGAT	1 cut(s)	1012
BtgI	CCRYGG	2 cut(s)	217, 1037
BtsCI	GGATG	2 cut(s)	975, 1061
CaiI	CAGNNNCTG	2 cut(s)	485, 1181
Cfr13I	GGNCC	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	1012
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	561, 1044, 1358
CviAII	CATG	9 cut(s)	218, 228, 248, 284, 410, 909, 953, 1038, 1235
CviQI	GTAC	3 cut(s)	561, 1044, 1358
DdeI	CTNAG	8 cut(s)	288, 303, 486, 532, 630, 1048, 1312, 1392
DraIII	CACNNNGTG	1 cut(s)	569
Eam1104I	CTCTTC	3 cut(s)	177, 426, 1266
EarI	CTCTTC	3 cut(s)	177, 426, 1266
Eco130I	CCWWGG	4 cut(s)	129, 217, 368, 1037
Eco24I	GRGCYC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	1349, 1389
Eco81I	CCTNAGG	1 cut(s)	1048
EcoRI	GAATTC	1 cut(s)	1279
EcoT14I	CCWWGG	4 cut(s)	129, 217, 368, 1037
EcoT22I	ATGCAT	1 cut(s)	1236
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	4 cut(s)	129, 217, 368, 1037
FaeI	CATG	9 cut(s)	221, 231, 251, 287, 413, 912, 956, 1041, 1238
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 646, 678
FatI	CATG	9 cut(s)	217, 227, 247, 283, 409, 908, 952, 1037, 1234
FbaI	TGATCA	2 cut(s)	43, 769
Fnu4HI	GCNGC	2 cut(s)	256, 449
FokI	GGATG	2 cut(s)	962, 1048
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	2 cut(s)	256, 449
FspBI	CTAG	3 cut(s)	369, 443, 567
GluI	GCNGC	2 cut(s)	256, 449
GsaI	CCCAGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	2 cut(s)	373, 617
HgaI	GACGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	9 cut(s)	221, 231, 251, 287, 413, 912, 956, 1041, 1238
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	6 cut(s)	274, 554, 824, 1009, 1058, 1431
HphI	GGTGA	5 cut(s)	65, 145, 407, 636, 1250
Hpy166II	GTNNAC	4 cut(s)	415, 563, 1044, 1435
Hpy188III	TCNNGA	7 cut(s)	29, 71, 111, 154, 314, 443, 1412
Hpy8I	GTNNAC	4 cut(s)	415, 563, 1044, 1435
HpyAV	CCTTC	3 cut(s)	88, 798, 1327
HpyCH4III	ACNGT	2 cut(s)	811, 1172
HpyCH4V	TGCA	8 cut(s)	344, 464, 855, 935, 1055, 1234, 1246, 1385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 773
HpyF3I	CTNAG	8 cut(s)	288, 303, 486, 532, 630, 1048, 1312, 1392
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	9 cut(s)	221, 231, 251, 287, 413, 912, 956, 1041, 1238
Ksp22I	TGATCA	2 cut(s)	43, 769
LguI	GCTCTTC	2 cut(s)	177, 1266
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	267, 460
LweI	GCATC	7 cut(s)	64, 336, 785, 1168, 1221, 1372, 1378
MaeI	CTAG	3 cut(s)	369, 443, 567
MaeIII	GTNAC	5 cut(s)	314, 817, 911, 1085, 1118
MboII	GAAGA	9 cut(s)	99, 194, 322, 413, 695, 1014, 1067, 1139, 1283
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	3 cut(s)	346, 458, 1129
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	9 cut(s)	89, 194, 293, 473, 707, 1003, 1248, 1279, 1292
MlyI	GAGTC	2 cut(s)	818, 1440
MmeI	TCCRAC	1 cut(s)	530
Mph1103I	ATGCAT	1 cut(s)	1236
MseI	TTAA	2 cut(s)	792, 1296
MspA1I	CMGCKG	2 cut(s)	674, 767
MspCI	CTTAAG	1 cut(s)	791
MunI	CAATTG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	11, 773
NcoI	CCATGG	2 cut(s)	217, 1037
NlaIII	CATG	9 cut(s)	221, 231, 251, 287, 413, 912, 956, 1041, 1238
NlaIV	GGNNCC	3 cut(s)	21, 86, 547
NmuCI	GTSAC	2 cut(s)	314, 817
NsiI	ATGCAT	1 cut(s)	1236
NspI	RCATGY	2 cut(s)	413, 956
NspV	TTCGAA	1 cut(s)	277
PciI	ACATGT	2 cut(s)	409, 952
PciSI	GCTCTTC	2 cut(s)	177, 1266
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	4 cut(s)	274, 554, 1009, 1058
PflFI	GACNNNGTC	1 cut(s)	743
PkrI	GCNGC	2 cut(s)	257, 450
PleI	GAGTC	2 cut(s)	818, 1439
PpsI	GAGTC	2 cut(s)	818, 1439
PscI	ACATGT	2 cut(s)	409, 952
PspFI	CCCAGC	1 cut(s)	10
PspN4I	GGNNCC	3 cut(s)	21, 86, 547
PspPI	GGNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	2 cut(s)	485, 1181
PsuI	RGATCY	3 cut(s)	346, 458, 1129
PsyI	GACNNNGTC	1 cut(s)	743
PvuII	CAGCTG	2 cut(s)	674, 767
RsaI	GTAC	3 cut(s)	562, 1045, 1359
RsaNI	GTAC	3 cut(s)	561, 1044, 1358
SapI	GCTCTTC	2 cut(s)	177, 1266
SaqAI	TTAA	2 cut(s)	792, 1296
SatI	GCNGC	2 cut(s)	256, 449
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	2 cut(s)	818, 1440
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	7 cut(s)	64, 336, 785, 1168, 1221, 1372, 1378
SfcI	CTRYAG	2 cut(s)	342, 675
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	9 cut(s)	89, 194, 293, 473, 707, 1003, 1248, 1279, 1292
SsiI	CCGC	2 cut(s)	266, 759
SspMI	CTAG	3 cut(s)	369, 443, 567
StyI	CCWWGG	4 cut(s)	129, 217, 368, 1037
TaaI	ACNGT	2 cut(s)	811, 1172
TaqI	TCGA	3 cut(s)	277, 1012, 1380
TasI	AATT	9 cut(s)	89, 194, 293, 473, 707, 1003, 1248, 1279, 1292
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	4 cut(s)	274, 554, 1009, 1058
Tru1I	TTAA	2 cut(s)	792, 1296
Tru9I	TTAA	2 cut(s)	792, 1296
TseFI	GTSAC	2 cut(s)	314, 817
TseI	GCWGC	2 cut(s)	255, 448
Tsp45I	GTSAC	2 cut(s)	314, 817
TspDTI	ATGAA	5 cut(s)	413, 579, 654, 1050, 1115
TspGWI	ACGGA	3 cut(s)	191, 394, 1054
Tth111I	GACNNNGTC	1 cut(s)	743
Vha464I	CTTAAG	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	5 cut(s)	194, 293, 707, 1248, 1279
XbaI	TCTAGA	1 cut(s)	442
XceI	RCATGY	2 cut(s)	413, 956
XmaJI	CCTAGG	1 cut(s)	368
XspI	CTAG	3 cut(s)	369, 443, 567
Zsp2I	ATGCAT	1 cut(s)	1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.