Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006246.1

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Reverse (-)

76559 .. 81236

Gene Structure 4678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006246.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggttgttcaggtcgaggaggtcacgatggctggctggaaggggaagatcgagttagttgggtttggattgttgcctcgctgtactcatcggcggaatggcttggaggtgcaagttcgagggttgcagggcaacgtcgtatctatggcagcctggatcaggcttccacgttcaacgacgacacctggcgctttgcatatccgcttatcagatttaccaaaacaccctttagagaacttgtggacagcaatttccgactctatttacaatcacacgggtccaactcttcacaagtgggctggaaacatccagacatgtacacgtggcggcgctgataggctgtggcggttagtggaacaacgacagagtcgaggaggaagaggtcaactttgcttggtgggtggattaatggcgtctccagctatggcaccagttcaagacgatgatgatgatcaatatggtgagatttcctttagtcctgctgctgttggggtccaattgaaggatcaattatcttctggaaatgactatgctcccaaggtgaggaaaccatacacgatcacgaaacagagagagagatggacagaggaagagcataacaaattccttgaagctctaaaactccatggtcgggcatggcgaaagatacaagaccatgttggcagcaaaactgcggttcagattcgaagtcatgctcagaaattcttttctaaggttgctcgtgacccagatggtatcaacacaagctctgcagatcccattgacattcctcctcctaggccaaaacggaaaccaatgcgtccttacccccgaaaacatgttcaccctcttcatacggaaacctctaatctagagcagccaataagatacaatcggttcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

294

Amino Acids

33.22

Weight (kDa)

9.9

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AciI	CCGC	5 cut(s)	94, 202, 327, 346, 674
AclWI	GGATC	3 cut(s)	164, 513, 749
AcsI	RAATTY	2 cut(s)	602, 701
AcvI	CACGTG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	413
AfaI	GTAC	2 cut(s)	85, 319
AfiI	CCNNNNNNNGG	4 cut(s)	159, 502, 543, 631
AflIII	ACRYGT	3 cut(s)	314, 320, 817
AgsI	TTSAA	4 cut(s)	174, 437, 502, 611
AjnI	CCWGG	2 cut(s)	152, 184
AluBI	AGCT	3 cut(s)	422, 614, 747
AluI	AGCT	3 cut(s)	422, 614, 747
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	3 cut(s)	164, 513, 749
AoxI	GGCC	1 cut(s)	779
ApeKI	GCWGC	4 cut(s)	149, 482, 663, 856
ApoI	RAATTY	2 cut(s)	602, 701
AseI	ATTAAT	1 cut(s)	407
AspA2I	CCTAGG	1 cut(s)	776
AspLEI	GCGC	2 cut(s)	191, 332
AspS9I	GGNCC	2 cut(s)	278, 493
AsuHPI	GGTGA	3 cut(s)	473, 553, 815
AsuII	TTCGAA	1 cut(s)	685
AvaII	GGWCC	2 cut(s)	278, 493
AvrII	CCTAGG	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	427
BauI	CACGAG	1 cut(s)	720
BbrPI	CACGTG	1 cut(s)	323
BbvI	GCAGC	4 cut(s)	161, 469, 675, 868
BccI	CCATC	3 cut(s)	22, 573, 725
BciT130I	CCWGG	2 cut(s)	154, 186
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	2 cut(s)	777, 851
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	2 cut(s)	192, 333
BisI	GCNGC	5 cut(s)	150, 328, 483, 664, 857
BlnI	CCTAGG	1 cut(s)	776
BlsI	GCNGC	5 cut(s)	151, 329, 484, 665, 858
Bme1390I	CCNGG	2 cut(s)	154, 186
Bme18I	GGWCC	2 cut(s)	278, 493
BmgT120I	GGNCC	2 cut(s)	278, 493
BmiI	GGNNCC	3 cut(s)	279, 429, 494
BmrFI	CCNGG	2 cut(s)	154, 186
BpmI	CTGGAG	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	685
BsaAI	YACGTR	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	537, 625, 776
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 502, 543, 631
Bse1I	ACTGG	1 cut(s)	431
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	2 cut(s)	154, 186
BseDI	CCNNGG	3 cut(s)	537, 625, 776
BseGI	GGATG	1 cut(s)	306
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	4 cut(s)	159, 502, 543, 631
BseMII	CTCAG	1 cut(s)	710
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	3 cut(s)	32, 387, 762
BseXI	GCAGC	4 cut(s)	161, 469, 675, 868
BshFI	GGCC	1 cut(s)	781
BshNI	GGYRCC	1 cut(s)	427
BslI	CCNNNNNNNGG	4 cut(s)	159, 502, 543, 631
BsmAI	GTCTC	1 cut(s)	420
BsmBI	CGTCTC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	781
Bsp119I	TTCGAA	1 cut(s)	685
Bsp1407I	TGTACA	1 cut(s)	317
Bsp143I	GATC	6 cut(s)	48, 156, 451, 505, 558, 754
Bsp19I	CCATGG	1 cut(s)	625
BspACI	CCGC	5 cut(s)	94, 202, 327, 346, 674
BspANI	GGCC	1 cut(s)	781
BspCNI	CTCAG	1 cut(s)	709
BspLI	GGNNCC	3 cut(s)	279, 429, 494
BspMAI	CTGCAG	1 cut(s)	754
BspPI	GGATC	3 cut(s)	164, 513, 749
BspQI	GCTCTTC	1 cut(s)	585
BspT104I	TTCGAA	1 cut(s)	685
BspT107I	GGYRCC	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	3 cut(s)	537, 625, 776
BssMI	GATC	6 cut(s)	48, 156, 451, 505, 558, 754
BssNI	GRCGYC	1 cut(s)	413
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	3 cut(s)	537, 625, 776
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	154, 186
Bst6I	CTCTTC	4 cut(s)	291, 373, 585, 834
BstACI	GRCGYC	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	685
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	696, 711
BstDSI	CCRYGG	1 cut(s)	625
BstENI	CCTNNNNNAGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	306
BstH2I	RGCGCY	2 cut(s)	192, 333
BstHHI	GCGC	2 cut(s)	191, 332
BstKTI	GATC	6 cut(s)	51, 159, 454, 508, 561, 757
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	6 cut(s)	48, 156, 451, 505, 558, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	2 cut(s)	154, 186
BstNSI	RCATGY	2 cut(s)	318, 821
BstSCI	CCNGG	2 cut(s)	152, 184
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	4 cut(s)	161, 469, 675, 868
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BsuRI	GGCC	1 cut(s)	781
BtgI	CCRYGG	1 cut(s)	625
BtsCI	GGATG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	2 cut(s)	191, 332
Cfr13I	GGNCC	2 cut(s)	278, 493
CseI	GACGC	2 cut(s)	402, 788
Csp6I	GTAC	2 cut(s)	84, 318
CviAII	CATG	6 cut(s)	315, 626, 636, 656, 692, 818
CviQI	GTAC	2 cut(s)	84, 318
DdeI	CTNAG	2 cut(s)	696, 711
DpnI	GATC	6 cut(s)	50, 158, 453, 507, 560, 756
DpnII	GATC	6 cut(s)	48, 156, 451, 505, 558, 754
Eam1104I	CTCTTC	4 cut(s)	291, 373, 585, 834
EarI	CTCTTC	4 cut(s)	291, 373, 585, 834
EciI	GGCGGA	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	537, 625, 776
Eco47I	GGWCC	2 cut(s)	278, 493
Eco72I	CACGTG	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	152, 184
EcoT14I	CCWWGG	3 cut(s)	537, 625, 776
ErhI	CCWWGG	3 cut(s)	537, 625, 776
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	6 cut(s)	318, 629, 639, 659, 695, 821
FatI	CATG	6 cut(s)	314, 625, 635, 655, 691, 817
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	5 cut(s)	150, 328, 483, 664, 857
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	5 cut(s)	150, 328, 483, 664, 857
FspBI	CTAG	2 cut(s)	777, 851
GlaI	GCGC	2 cut(s)	190, 331
GluI	GCNGC	5 cut(s)	150, 328, 483, 664, 857
GsuI	CTGGAG	1 cut(s)	402
HaeII	RGCGCY	2 cut(s)	192, 333
HaeIII	GGCC	1 cut(s)	781
HgaI	GACGC	2 cut(s)	402, 788
HhaI	GCGC	2 cut(s)	191, 332
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	6 cut(s)	318, 629, 639, 659, 695, 821
Hin6I	GCGC	2 cut(s)	189, 330
HinP1I	GCGC	2 cut(s)	189, 330
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HinfI	GANTC	3 cut(s)	257, 367, 682
HphI	GGTGA	3 cut(s)	473, 553, 815
Hpy166II	GTNNAC	4 cut(s)	243, 320, 386, 823
Hpy188I	TCNGA	5 cut(s)	211, 256, 681, 699, 884
Hpy188III	TCNNGA	7 cut(s)	25, 310, 437, 519, 562, 722, 851
Hpy8I	GTNNAC	4 cut(s)	243, 320, 386, 823
Hpy99I	CGWCG	2 cut(s)	140, 181
HpyAV	CCTTC	2 cut(s)	34, 496
HpyCH4IV	ACGT	3 cut(s)	135, 169, 322
HpyCH4V	TGCA	4 cut(s)	112, 127, 196, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	2 cut(s)	696, 711
HpySE526I	ACGT	3 cut(s)	135, 169, 322
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	6 cut(s)	318, 629, 639, 659, 695, 821
HspAI	GCGC	2 cut(s)	189, 330
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	6 cut(s)	48, 156, 451, 505, 558, 754
LguI	GCTCTTC	1 cut(s)	585
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	4 cut(s)	161, 469, 675, 868
MaeI	CTAG	2 cut(s)	777, 851
MaeII	ACGT	3 cut(s)	135, 169, 322
MaeIII	GTNAC	2 cut(s)	22, 722
MalI	GATC	6 cut(s)	50, 158, 453, 507, 560, 756
MboI	GATC	6 cut(s)	48, 156, 451, 505, 558, 754
MboII	GAAGA	7 cut(s)	58, 278, 390, 507, 602, 821, 871
MfeI	CAATTG	1 cut(s)	497
MflI	RGATCY	1 cut(s)	754
MluCI	AATT	5 cut(s)	249, 497, 509, 602, 701
MlyI	GAGTC	2 cut(s)	251, 376
MmeI	TCCRAC	2 cut(s)	279, 305
MseI	TTAA	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	154, 186
MunI	CAATTG	1 cut(s)	497
MvaI	CCWGG	2 cut(s)	154, 186
MwoI	GCNNNNNNNGC	1 cut(s)	419
NcoI	CCATGG	1 cut(s)	625
NdeII	GATC	6 cut(s)	48, 156, 451, 505, 558, 754
NlaIII	CATG	6 cut(s)	318, 629, 639, 659, 695, 821
NlaIV	GGNNCC	3 cut(s)	279, 429, 494
NmuCI	GTSAC	2 cut(s)	22, 722
NspI	RCATGY	2 cut(s)	318, 821
NspV	TTCGAA	1 cut(s)	685
PciI	ACATGT	2 cut(s)	314, 817
PciSI	GCTCTTC	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	2 cut(s)	367, 637
PfeI	GAWTC	1 cut(s)	682
PflFI	GACNNNGTC	1 cut(s)	366
PkrI	GCNGC	5 cut(s)	151, 329, 484, 665, 858
PleI	GAGTC	2 cut(s)	251, 375
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
PpsI	GAGTC	2 cut(s)	251, 375
Ppu21I	YACGTR	1 cut(s)	323
PscI	ACATGT	2 cut(s)	314, 817
PshBI	ATTAAT	1 cut(s)	407
Psp6I	CCWGG	2 cut(s)	152, 184
PspCI	CACGTG	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	152, 184
PspN4I	GGNNCC	3 cut(s)	279, 429, 494
PspPI	GGNCC	2 cut(s)	278, 493
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	754
PsyI	GACNNNGTC	1 cut(s)	366
RsaI	GTAC	2 cut(s)	85, 319
RsaNI	GTAC	2 cut(s)	84, 318
SapI	GCTCTTC	1 cut(s)	585
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	5 cut(s)	150, 328, 483, 664, 857
Sau3AI	GATC	6 cut(s)	48, 156, 451, 505, 558, 754
Sau96I	GGNCC	2 cut(s)	278, 493
SchI	GAGTC	2 cut(s)	251, 376
ScrFI	CCNGG	2 cut(s)	154, 186
SfcI	CTRYAG	1 cut(s)	750
SfuI	TTCGAA	1 cut(s)	685
SinI	GGWCC	2 cut(s)	278, 493
Sse9I	AATT	5 cut(s)	249, 497, 509, 602, 701
SsiI	CCGC	5 cut(s)	94, 202, 327, 346, 674
SspMI	CTAG	2 cut(s)	777, 851
StyD4I	CCNGG	2 cut(s)	152, 184
StyI	CCWWGG	3 cut(s)	537, 625, 776
TaiI	ACGT	3 cut(s)	138, 172, 325
TaqI	TCGA	5 cut(s)	15, 51, 118, 370, 685
TasI	AATT	5 cut(s)	249, 497, 509, 602, 701
TatI	WGTACW	2 cut(s)	83, 317
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TseFI	GTSAC	2 cut(s)	22, 722
TseI	GCWGC	4 cut(s)	149, 482, 663, 856
Tsp45I	GTSAC	2 cut(s)	22, 722
TspDTI	ATGAA	1 cut(s)	821
TspGWI	ACGGA	2 cut(s)	802, 851
Tth111I	GACNNNGTC	1 cut(s)	366
VpaK11BI	GGWCC	2 cut(s)	278, 493
VspI	ATTAAT	1 cut(s)	407
XagI	CCTNNNNNAGG	1 cut(s)	157
XapI	RAATTY	2 cut(s)	602, 701
XbaI	TCTAGA	1 cut(s)	850
XceI	RCATGY	2 cut(s)	318, 821
XmaJI	CCTAGG	1 cut(s)	776
XspI	CTAG	2 cut(s)	777, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.