Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Forward (+)

15187411 .. 15189775

Gene Structure 2365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022921

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGCACCAGTTCAAGATGATGATGATGATCAATATGGTGAGATTTCCTTTAGTCCTGCTGCTGTTGGGGTCCAATTGAAGGATCACTTATCTTCTGGAAATGACTATGCTCCCAAGGTGAGGAAACCATACACGATCACGAAACAGAGAGAGAGATGGACAGAGGAAGAGCATAACAAATTCCTTGAAGCTCTAAAACTCCATGGTCGGGCATGGCGAAAGATACAAGACCATGTTGGCAGCAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAATTCTTTTCTAAGGTTGCTCGTGACCCAGATGGCATCAACACAAGCTCTGCAGATCCCATTGACATACCTCCTCCTAGGCCAAAACGGAAACCAATGCGTCCTTACCCCCGAAAACATGTTCACCCTCTTCATACAGAAACCTCTAATCTAGAGCAGCCAATAAGGTCTGCACCTAAAAAATTATCAGTTTCTGAGCTTGAAAACCAATCTCCAACATCAGTATTATCTCCAATGGGCTCAGATACAATCGGTTCCTCTGATTCAAGTACACCTAGTGGTAGTCTATCCCCTGTTTCATTGGTTGCTGGTGTCCAAAATGAGGCCATAAATCATTCTGAGCAACAGCCATCACCAAAGGAAAGTAGGACTTCATTATCAGCTGTAGCAGAAGATGGCCCACTTCCTGACAAGAAATTTTCTGTGAAGCTGGAGTTATTTCCCAGAGACAATGTCTATGATAGTGGCGGTTCAGCTGCTGAGGCATCTGCCAGAAGCCTTAAGCTTTTCGGAAGGACTGTATTGGTCACAGACTCCCACCGACCTCTCTCTGGTGGAACTTGCAAATCAATCTCTTATGACACGCAAGAGGAGAAATGTGGGCAAACATCAATACCATGTAACTTTATGCCTATTCAATGTGCATTTGGGAATGTGGAACATGTTTGGAATAGACATCAACTCATCCATTTTCCTCAATGTCAGAATGAGAATTGGAATCGATCTGGTTCTTCTAATCTTATACCATGGTGTACCTTAGGTGCAGATTCATCAGTTCCATTTCTTCCATTCAGTAACCAGCAGACAATGAAATCATATTTTGATTGTAACCTTGAAGATCCCCACGATAAAGATGTTCAGAAAGAAAGTTCTTGGAACGGTTCAGATGCTGGATCAGTAAGTGATGAGGAAAATGGAGGCAAATGTTTAGATGTAGAGATGCATGGTGATCTGCAAATTTCTGAAAAAGAAAAAGTTGAAGAGCCGAATTCGGTATTTCAATTTAAGGCGAGTAAAACCTCAGCCTTCTCTAAACTGAAGCCTGAAAAGTGTAAAAAAGGATTTGTACCATATAAAAGATGTATGGTGGATGCAGATGCTCAGTCCTCAACTTCAGGTCAAGACAGGGATCAGAAAAGAGTCCACCTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

477

Amino Acids

52.75

Weight (kDa)

6.48

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	50 - 93	7.6e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	5 cut(s)	90, 326, 1109, 1177, 1413
AcsI	RAATTY	5 cut(s)	179, 278, 692, 1233, 1264
AcuI	CTGAAG	2 cut(s)	1334, 1374
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	3 cut(s)	547, 1030, 1344
AfiI	CCNNNNNNNGG	5 cut(s)	79, 120, 208, 598, 827
AflII	CTTAAG	1 cut(s)	776
AflIII	ACRYGT	2 cut(s)	394, 937
AgsI	TTSAA	9 cut(s)	14, 79, 188, 479, 543, 914, 1112, 1256, 1277
AluBI	AGCT	7 cut(s)	191, 324, 475, 659, 706, 752, 781
AluI	AGCT	7 cut(s)	191, 324, 475, 659, 706, 752, 781
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	5 cut(s)	90, 326, 1109, 1177, 1413
AlwNI	CAGNNNCTG	3 cut(s)	470, 755, 1166
AoxI	GGCC	3 cut(s)	356, 600, 673
ApeKI	GCWGC	4 cut(s)	59, 240, 433, 752
ApoI	RAATTY	5 cut(s)	179, 278, 692, 1233, 1264
AspA2I	CCTAGG	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	70, 674
AsuHPI	GGTGA	5 cut(s)	50, 130, 392, 621, 1235
AsuII	TTCGAA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	70
AvrII	CCTAGG	1 cut(s)	353
AxyI	CCTNAGG	1 cut(s)	1033
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	518
BauI	CACGAG	1 cut(s)	297
BbvCI	CCTCAGC	2 cut(s)	756, 1297
BbvI	GCAGC	4 cut(s)	46, 252, 445, 739
BccI	CCATC	4 cut(s)	150, 302, 634, 665
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	3 cut(s)	354, 428, 552
BfmI	CTRYAG	2 cut(s)	327, 660
BfrI	CTTAAG	1 cut(s)	776
BisI	GCNGC	4 cut(s)	60, 241, 434, 753
BlnI	CCTAGG	1 cut(s)	353
BlsI	GCNGC	4 cut(s)	61, 242, 435, 754
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	70, 674
BmiI	GGNNCC	3 cut(s)	6, 71, 532
BmsI	GCATC	6 cut(s)	321, 770, 1153, 1206, 1357, 1363
BpmI	CTGGAG	1 cut(s)	728
Bpu10I	CCTNAGC	2 cut(s)	756, 1297
Bpu14I	TTCGAA	1 cut(s)	262
Bsa29I	ATCGAT	1 cut(s)	997
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	4 cut(s)	114, 202, 353, 1022
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 120, 208, 598, 827
Bse1I	ACTGG	1 cut(s)	8
Bse21I	CCTNAGG	1 cut(s)	1033
Bse8I	GATNNNNATC	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	997
BseDI	CCNNGG	4 cut(s)	114, 202, 353, 1022
BseGI	GGATG	2 cut(s)	960, 1372
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	5 cut(s)	79, 120, 208, 598, 827
BseMII	CTCAG	7 cut(s)	287, 462, 531, 606, 747, 1311, 1391
BseNI	ACTGG	1 cut(s)	8
BseRI	GAGGAG	2 cut(s)	339, 881
BseXI	GCAGC	4 cut(s)	46, 252, 445, 739
BsgI	GTGCAG	2 cut(s)	432, 1059
BshFI	GGCC	3 cut(s)	358, 602, 675
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	997
BslI	CCNNNNNNNGG	5 cut(s)	79, 120, 208, 598, 827
BsmAI	GTCTC	1 cut(s)	717
BsnI	GGCC	3 cut(s)	358, 602, 675
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	9 cut(s)	28, 82, 135, 331, 998, 1114, 1169, 1225, 1405
Bsp19I	CCATGG	2 cut(s)	202, 1022
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	3 cut(s)	358, 602, 675
BspCNI	CTCAG	7 cut(s)	286, 463, 530, 607, 748, 1310, 1390
BspDI	ATCGAT	1 cut(s)	997
BspLI	GGNNCC	3 cut(s)	6, 71, 532
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	5 cut(s)	90, 326, 1109, 1177, 1413
BspQI	GCTCTTC	2 cut(s)	162, 1251
BspT104I	TTCGAA	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	776
BsrI	ACTGG	1 cut(s)	8
BssECI	CCNNGG	4 cut(s)	114, 202, 353, 1022
BssMI	GATC	9 cut(s)	28, 82, 135, 331, 998, 1114, 1169, 1225, 1405
BssSI	CACGAG	1 cut(s)	297
BssT1I	CCWWGG	4 cut(s)	114, 202, 353, 1022
Bst2BI	CACGAG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	796, 1157
Bst6I	CTCTTC	3 cut(s)	162, 411, 1251
BstAFI	CTTAAG	1 cut(s)	776
BstBI	TTCGAA	1 cut(s)	262
BstDEI	CTNAG	9 cut(s)	273, 288, 471, 517, 615, 756, 1033, 1297, 1377
BstDSI	CCRYGG	2 cut(s)	202, 1022
BstF5I	GGATG	2 cut(s)	960, 1372
BstKTI	GATC	9 cut(s)	31, 85, 138, 334, 1001, 1117, 1172, 1228, 1408
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	9 cut(s)	28, 82, 135, 331, 998, 1114, 1169, 1225, 1405
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNSI	RCATGY	2 cut(s)	398, 941
BstSFI	CTRYAG	2 cut(s)	327, 660
BstV1I	GCAGC	4 cut(s)	46, 252, 445, 739
BstX2I	RGATCY	2 cut(s)	331, 1114
BstYI	RGATCY	2 cut(s)	331, 1114
Bsu15I	ATCGAT	1 cut(s)	997
Bsu36I	CCTNAGG	1 cut(s)	1033
BsuRI	GGCC	3 cut(s)	358, 602, 675
BsuTUI	ATCGAT	1 cut(s)	997
BtgI	CCRYGG	2 cut(s)	202, 1022
BtsCI	GGATG	2 cut(s)	960, 1372
CaiI	CAGNNNCTG	3 cut(s)	470, 755, 1166
Cfr13I	GGNCC	2 cut(s)	70, 674
ClaI	ATCGAT	1 cut(s)	997
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	3 cut(s)	546, 1029, 1343
CviAII	CATG	9 cut(s)	203, 213, 233, 269, 395, 894, 938, 1023, 1220
CviQI	GTAC	3 cut(s)	546, 1029, 1343
DdeI	CTNAG	9 cut(s)	273, 288, 471, 517, 615, 756, 1033, 1297, 1377
DpnI	GATC	9 cut(s)	30, 84, 137, 333, 1000, 1116, 1171, 1227, 1407
DpnII	GATC	9 cut(s)	28, 82, 135, 331, 998, 1114, 1169, 1225, 1405
DraIII	CACNNNGTG	1 cut(s)	554
Eam1104I	CTCTTC	3 cut(s)	162, 411, 1251
EarI	CTCTTC	3 cut(s)	162, 411, 1251
Eco130I	CCWWGG	4 cut(s)	114, 202, 353, 1022
Eco24I	GRGCYC	1 cut(s)	518
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	1334, 1374
Eco81I	CCTNAGG	1 cut(s)	1033
EcoRI	GAATTC	1 cut(s)	1264
EcoT14I	CCWWGG	4 cut(s)	114, 202, 353, 1022
EcoT22I	ATGCAT	1 cut(s)	1221
EcoT38I	GRGCYC	1 cut(s)	518
ErhI	CCWWGG	4 cut(s)	114, 202, 353, 1022
FaeI	CATG	9 cut(s)	206, 216, 236, 272, 398, 897, 941, 1026, 1223
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 631, 663
FatI	CATG	9 cut(s)	202, 212, 232, 268, 394, 893, 937, 1022, 1219
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	4 cut(s)	60, 241, 434, 753
FokI	GGATG	2 cut(s)	947, 1379
FriOI	GRGCYC	1 cut(s)	518
Fsp4HI	GCNGC	4 cut(s)	60, 241, 434, 753
FspBI	CTAG	3 cut(s)	354, 428, 552
GluI	GCNGC	4 cut(s)	60, 241, 434, 753
GsuI	CTGGAG	1 cut(s)	728
HaeIII	GGCC	3 cut(s)	358, 602, 675
HgaI	GACGC	1 cut(s)	365
Hin1II	CATG	9 cut(s)	206, 216, 236, 272, 398, 897, 941, 1026, 1223
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	6 cut(s)	259, 539, 809, 994, 1043, 1416
HphI	GGTGA	5 cut(s)	50, 130, 392, 621, 1235
Hpy166II	GTNNAC	4 cut(s)	400, 548, 1029, 1420
Hpy188III	TCNNGA	7 cut(s)	14, 96, 139, 299, 428, 683, 1397
Hpy8I	GTNNAC	4 cut(s)	400, 548, 1029, 1420
HpyAV	CCTTC	3 cut(s)	73, 783, 1312
HpyCH4III	ACNGT	2 cut(s)	796, 1157
HpyCH4V	TGCA	8 cut(s)	329, 449, 840, 920, 1040, 1219, 1231, 1370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	9 cut(s)	273, 288, 471, 517, 615, 756, 1033, 1297, 1377
Hsp92II	CATG	9 cut(s)	206, 216, 236, 272, 398, 897, 941, 1026, 1223
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	9 cut(s)	28, 82, 135, 331, 998, 1114, 1169, 1225, 1405
LguI	GCTCTTC	2 cut(s)	162, 1251
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	4 cut(s)	46, 252, 445, 739
LweI	GCATC	6 cut(s)	321, 770, 1153, 1206, 1357, 1363
MaeI	CTAG	3 cut(s)	354, 428, 552
MaeIII	GTNAC	5 cut(s)	299, 802, 896, 1070, 1103
MalI	GATC	9 cut(s)	30, 84, 137, 333, 1000, 1116, 1171, 1227, 1407
MboI	GATC	9 cut(s)	28, 82, 135, 331, 998, 1114, 1169, 1225, 1405
MboII	GAAGA	8 cut(s)	84, 179, 398, 680, 999, 1052, 1124, 1268
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	2 cut(s)	331, 1114
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	9 cut(s)	74, 179, 278, 458, 692, 988, 1233, 1264, 1277
MlyI	GAGTC	2 cut(s)	803, 1425
MmeI	TCCRAC	1 cut(s)	515
Mph1103I	ATGCAT	1 cut(s)	1221
MseI	TTAA	2 cut(s)	777, 1281
MspA1I	CMGCKG	2 cut(s)	659, 752
MspCI	CTTAAG	1 cut(s)	776
MunI	CAATTG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	758
NcoI	CCATGG	2 cut(s)	202, 1022
NdeII	GATC	9 cut(s)	28, 82, 135, 331, 998, 1114, 1169, 1225, 1405
NlaIII	CATG	9 cut(s)	206, 216, 236, 272, 398, 897, 941, 1026, 1223
NlaIV	GGNNCC	3 cut(s)	6, 71, 532
NmuCI	GTSAC	2 cut(s)	299, 802
NsiI	ATGCAT	1 cut(s)	1221
NspI	RCATGY	2 cut(s)	398, 941
NspV	TTCGAA	1 cut(s)	262
PciI	ACATGT	2 cut(s)	394, 937
PciSI	GCTCTTC	2 cut(s)	162, 1251
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PfeI	GAWTC	4 cut(s)	259, 539, 994, 1043
PflFI	GACNNNGTC	1 cut(s)	728
PkrI	GCNGC	4 cut(s)	61, 242, 435, 754
PleI	GAGTC	2 cut(s)	803, 1424
PpsI	GAGTC	2 cut(s)	803, 1424
PscI	ACATGT	2 cut(s)	394, 937
PspN4I	GGNNCC	3 cut(s)	6, 71, 532
PspPI	GGNCC	2 cut(s)	70, 674
PstI	CTGCAG	1 cut(s)	331
PstNI	CAGNNNCTG	3 cut(s)	470, 755, 1166
PsuI	RGATCY	2 cut(s)	331, 1114
PsyI	GACNNNGTC	1 cut(s)	728
PvuII	CAGCTG	2 cut(s)	659, 752
RsaI	GTAC	3 cut(s)	547, 1030, 1344
RsaNI	GTAC	3 cut(s)	546, 1029, 1343
SapI	GCTCTTC	2 cut(s)	162, 1251
SaqAI	TTAA	2 cut(s)	777, 1281
SatI	GCNGC	4 cut(s)	60, 241, 434, 753
Sau3AI	GATC	9 cut(s)	28, 82, 135, 331, 998, 1114, 1169, 1225, 1405
Sau96I	GGNCC	2 cut(s)	70, 674
SchI	GAGTC	2 cut(s)	803, 1425
SduI	GDGCHC	1 cut(s)	518
SfaNI	GCATC	6 cut(s)	321, 770, 1153, 1206, 1357, 1363
SfcI	CTRYAG	2 cut(s)	327, 660
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	9 cut(s)	74, 179, 278, 458, 692, 988, 1233, 1264, 1277
SsiI	CCGC	1 cut(s)	744
SspMI	CTAG	3 cut(s)	354, 428, 552
StyI	CCWWGG	4 cut(s)	114, 202, 353, 1022
TaaI	ACNGT	2 cut(s)	796, 1157
TaqI	TCGA	2 cut(s)	262, 997
TasI	AATT	9 cut(s)	74, 179, 278, 458, 692, 988, 1233, 1264, 1277
TatI	WGTACW	1 cut(s)	545
TfiI	GAWTC	4 cut(s)	259, 539, 994, 1043
Tru1I	TTAA	2 cut(s)	777, 1281
Tru9I	TTAA	2 cut(s)	777, 1281
TseFI	GTSAC	2 cut(s)	299, 802
TseI	GCWGC	4 cut(s)	59, 240, 433, 752
Tsp45I	GTSAC	2 cut(s)	299, 802
TspDTI	ATGAA	5 cut(s)	398, 564, 639, 1035, 1100
TspGWI	ACGGA	1 cut(s)	379
Tth111I	GACNNNGTC	1 cut(s)	728
Vha464I	CTTAAG	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	5 cut(s)	179, 278, 692, 1233, 1264
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	2 cut(s)	398, 941
XmaJI	CCTAGG	1 cut(s)	353
XspI	CTAG	3 cut(s)	354, 428, 552
Zsp2I	ATGCAT	1 cut(s)	1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.