Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Reverse (-)

64986317 .. 64988658

Gene Structure 2342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG409800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTTTTGAGGTTGGACGGTCTCGATAAAAAGAAGTTTGATGGGTCTAGGCCATCTGCAACGTTCATTATCGGGTTAAGGCGAGTACCCATAAGCTGTGATGTTCGTTTCCAACCTTGTATTGATATACACAAGGAACAACGACAGAGTCGAGGAGGAAGAGGTCAACTGTGCTTGGTGGGTGGATTAATGGCGTCTCCAGCTATGGCACCAGTTCAAGATGATGATGATGATCAATATGGTGAGATTTCCTTTAGTCCTGCTGCTGTTGGGGTCCAATTGAAGGATCAATTATCTTCTGGAAATGACTATGCTCCCAAGGTGAGGAAACCATACACGATCACGAAACAGAGAGAGAGATGGACAGAGGAAGAGCATAACAAATTCCTTGAAGCTCTAAAACTCCATGGTCGGGCATGGCGAAAGATACAAGGTATATTGAGGAAGAGGAAAGCTTATTGTTTTCCAATTACCAATCAAACCGATAACAAAGTTAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

167

Amino Acids

19.05

Weight (kDa)

9.54

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	118 - 147	3.6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	208
AclI	AACGTT	1 cut(s)	62
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	3 cut(s)	283, 324, 412
AgsI	TTSAA	3 cut(s)	218, 283, 392
AluBI	AGCT	4 cut(s)	96, 203, 395, 455
AluI	AGCT	4 cut(s)	96, 203, 395, 455
Alw26I	GTCTC	2 cut(s)	26, 201
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	383
AseI	ATTAAT	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	254, 334
AvaII	GGWCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	3 cut(s)	35, 61, 354
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	26, 201
BfaI	CTAG	2 cut(s)	48, 502
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	210, 275
BpmI	CTGGAG	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	318, 406
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 324, 412
Bse1I	ACTGG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	318, 406
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	3 cut(s)	283, 324, 412
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	250
BshFI	GGCC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	208
BslI	CCNNNNNNNGG	3 cut(s)	283, 324, 412
BsmAI	GTCTC	2 cut(s)	26, 201
BsmBI	CGTCTC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	52
Bso31I	GGTCTC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	232, 286, 339
Bsp19I	CCATGG	1 cut(s)	406
BspANI	GGCC	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	210, 275
BspPI	GGATC	1 cut(s)	294
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	318, 406
BssMI	GATC	3 cut(s)	232, 286, 339
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	2 cut(s)	318, 406
Bst4CI	ACNGT	2 cut(s)	20, 171
Bst6I	CTCTTC	3 cut(s)	154, 366, 440
BstACI	GRCGYC	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	406
BstKTI	GATC	3 cut(s)	235, 289, 342
BstMAI	GTCTC	2 cut(s)	26, 201
BstMBI	GATC	3 cut(s)	232, 286, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	274
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	407, 417
CviJI	RGCY	5 cut(s)	52, 96, 203, 395, 455
CviKI_1	RGCY	5 cut(s)	52, 96, 203, 395, 455
CviQI	GTAC	1 cut(s)	86
DpnI	GATC	3 cut(s)	234, 288, 341
DpnII	GATC	3 cut(s)	232, 286, 339
Eam1104I	CTCTTC	3 cut(s)	154, 366, 440
EarI	CTCTTC	3 cut(s)	154, 366, 440
Eco130I	CCWWGG	2 cut(s)	318, 406
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	318, 406
ErhI	CCWWGG	2 cut(s)	318, 406
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	2 cut(s)	410, 420
FatI	CATG	2 cut(s)	406, 416
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	48, 502
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	52
HgaI	GACGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	410, 420
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	1 cut(s)	148
HphI	GGTGA	2 cut(s)	254, 334
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188III	TCNNGA	4 cut(s)	23, 218, 300, 343
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	20, 171
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	410, 420
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	232, 286, 339
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	4 cut(s)	213, 225, 273, 285
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	48, 502
MaeII	ACGT	1 cut(s)	62
MalI	GATC	3 cut(s)	234, 288, 341
MboI	GATC	3 cut(s)	232, 286, 339
MboII	GAAGA	4 cut(s)	171, 288, 383, 457
MfeI	CAATTG	1 cut(s)	278
MluCI	AATT	5 cut(s)	278, 290, 383, 468, 496
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	8 cut(s)	3, 146, 149, 155, 318, 361, 435, 441
MseI	TTAA	3 cut(s)	77, 188, 495
MunI	CAATTG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	3 cut(s)	232, 286, 339
NlaIII	CATG	2 cut(s)	410, 420
NlaIV	GGNNCC	2 cut(s)	210, 275
PciSI	GCTCTTC	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	2 cut(s)	148, 418
PflFI	GACNNNGTC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PshBI	ATTAAT	1 cut(s)	188
Psp1406I	AACGTT	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	210, 275
PspPI	GGNCC	1 cut(s)	274
PsyI	GACNNNGTC	1 cut(s)	147
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	77, 188, 495
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	232, 286, 339
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	5 cut(s)	278, 290, 383, 468, 496
SspMI	CTAG	2 cut(s)	48, 502
StyI	CCWWGG	2 cut(s)	318, 406
TaaI	ACNGT	2 cut(s)	20, 171
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	24, 151
TasI	AATT	5 cut(s)	278, 290, 383, 468, 496
Tru1I	TTAA	3 cut(s)	77, 188, 495
Tru9I	TTAA	3 cut(s)	77, 188, 495
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	55
Tth111I	GACNNNGTC	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	274
VspI	ATTAAT	1 cut(s)	188
XapI	RAATTY	1 cut(s)	383
XspI	CTAG	2 cut(s)	48, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.