Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Reverse (-)

34747078 .. 34750277

Gene Structure 3200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG289800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCGTCCTTACCCCCGAAAACATGTTCACCCTCTTCATACAGAAACCTCTAATTTAGAGCAGCCAATAAGGTCTGCACCTAAAAAATTATCAGTTTCTGATCTTGAAAACCAATCTCCAACATCAGTATTATCTCCAATGGGCTCAGATACAATCGGTTCTTCTGATTCAAGTACACCTAGTGGTAGTCTATCCCCTGTTTCATTGGTTGCTGGTGTCCAAAATGAGGCCATAAATCATTCTGAACAACAGCCATCACCAGAGGATAGTAGGACTTCATTATCAGCTGTAGCAGAAGATGGCCCACTTCCTGACAAGAAATTTTCTGTGAAGCTGGAGTTATTTCCCACAGACAATGTCTATGATAGTGGCGGTTCAGCTGATGAGGCATCTGCCAGAAGCCTTAAGCTTTTCGGAAGGACTGTATTGGTCACAGACTCCCACCGACCTCTCTCTGGTGGAACTTGCAAGTCAATCTCTTATGACACGCAAGAGGAGAAATGTGGGCAAACATCAATACCATGTAACTTTATGCCTATTCAATGTGCATTTGGGAATGTGGAACATGTTTGGAATGAGAATTGGAATCGATCTGGTTCTTCTAATCTTATACCATGGTGTACCTTAGGTGCAGATTCATCCGTTCCATTTCTTCCATTCAGTAACCAGCAGACAATGAAATCATATTTTGATTGTAACCTTGAAGATCCCCACAATCAAGATGTTCAGAAAGAAAGTTCTTGGAACGGTTCAGATGCTGGATCAGTGAGTGATGAGGAAAATGGAGGCAAATGTTTAGATGTAGAGATGCATGGGGATCTGCAAATTTCTGAAAAAGAAAAAGTTGAAGAGCCGAATTCGGTTTTTCAATTTAAGGCGAGTAAAAACTCAGCCTTCTCTAAACTGAAGCCTGAAAAGTGTAAAAAAGGATTTGTACCATATAAAAGATGTATGGTGGATGCAGATGCTCGGTCCTCAACTTCAGGTCAAGACAGGGATCAGAAAAGAGTCCACCTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

340

Amino Acids

37.18

Weight (kDa)

5.35

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	4 cut(s)	701, 769, 825, 1005
AcsI	RAATTY	3 cut(s)	320, 825, 856
AcuI	CTGAAG	2 cut(s)	926, 966
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	3 cut(s)	175, 622, 936
AfiI	CCNNNNNNNGG	2 cut(s)	226, 455
AflII	CTTAAG	1 cut(s)	404
AflIII	ACRYGT	2 cut(s)	22, 565
AgsI	TTSAA	6 cut(s)	107, 171, 542, 704, 848, 869
AluBI	AGCT	4 cut(s)	287, 334, 380, 409
AluI	AGCT	4 cut(s)	287, 334, 380, 409
AlwI	GGATC	4 cut(s)	701, 769, 825, 1005
AlwNI	CAGNNNCTG	2 cut(s)	98, 758
AoxI	GGCC	2 cut(s)	228, 301
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	3 cut(s)	320, 825, 856
AspS9I	GGNCC	2 cut(s)	302, 972
AsuHPI	GGTGA	2 cut(s)	20, 249
AvaII	GGWCC	1 cut(s)	972
AxyI	CCTNAGG	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	262, 293
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	288
BfrI	CTTAAG	1 cut(s)	404
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	972
BmgT120I	GGNCC	2 cut(s)	302, 972
BmsI	GCATC	5 cut(s)	398, 745, 798, 949, 955
BpmI	CTGGAG	1 cut(s)	356
Bsa29I	ATCGAT	1 cut(s)	589
BsaJI	CCNNGG	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 455
Bse21I	CCTNAGG	1 cut(s)	625
BseCI	ATCGAT	1 cut(s)	589
BseDI	CCNNGG	1 cut(s)	614
BseGI	GGATG	2 cut(s)	638, 964
BseLI	CCNNNNNNNGG	2 cut(s)	226, 455
BseMII	CTCAG	2 cut(s)	159, 903
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	2 cut(s)	60, 651
BshFI	GGCC	2 cut(s)	230, 303
BshVI	ATCGAT	1 cut(s)	589
BslI	CCNNNNNNNGG	2 cut(s)	226, 455
BsnI	GGCC	2 cut(s)	230, 303
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	6 cut(s)	100, 590, 706, 761, 817, 997
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	2 cut(s)	230, 303
BspCNI	CTCAG	2 cut(s)	158, 902
BspDI	ATCGAT	1 cut(s)	589
BspPI	GGATC	4 cut(s)	701, 769, 825, 1005
BspQI	GCTCTTC	1 cut(s)	843
BspTI	CTTAAG	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	6 cut(s)	100, 590, 706, 761, 817, 997
BssT1I	CCWWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	424, 749
Bst6I	CTCTTC	2 cut(s)	39, 843
BstAFI	CTTAAG	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	145, 625, 889
BstDSI	CCRYGG	1 cut(s)	614
BstF5I	GGATG	2 cut(s)	638, 964
BstKTI	GATC	6 cut(s)	103, 593, 709, 764, 820, 1000
BstMBI	GATC	6 cut(s)	100, 590, 706, 761, 817, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNSI	RCATGY	2 cut(s)	26, 569
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	2 cut(s)	706, 817
BstYI	RGATCY	2 cut(s)	706, 817
Bsu15I	ATCGAT	1 cut(s)	589
Bsu36I	CCTNAGG	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	230, 303
BsuTUI	ATCGAT	1 cut(s)	589
BtgI	CCRYGG	1 cut(s)	614
BtsCI	GGATG	2 cut(s)	638, 964
BtsIMutI	CAGTG	1 cut(s)	771
CaiI	CAGNNNCTG	2 cut(s)	98, 758
Cfr13I	GGNCC	2 cut(s)	302, 972
ClaI	ATCGAT	1 cut(s)	589
Csp6I	GTAC	3 cut(s)	174, 621, 935
CviAII	CATG	5 cut(s)	23, 522, 566, 615, 812
CviQI	GTAC	3 cut(s)	174, 621, 935
DdeI	CTNAG	3 cut(s)	145, 625, 889
DpnI	GATC	6 cut(s)	102, 592, 708, 763, 819, 999
DpnII	GATC	6 cut(s)	100, 590, 706, 761, 817, 997
DraIII	CACNNNGTG	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	39, 843
EarI	CTCTTC	2 cut(s)	39, 843
Eco130I	CCWWGG	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	972
Eco57I	CTGAAG	2 cut(s)	926, 966
Eco81I	CCTNAGG	1 cut(s)	625
EcoRI	GAATTC	1 cut(s)	856
EcoT14I	CCWWGG	1 cut(s)	614
EcoT22I	ATGCAT	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	614
FaeI	CATG	5 cut(s)	26, 525, 569, 618, 815
FatI	CATG	5 cut(s)	22, 521, 565, 614, 811
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	2 cut(s)	625, 971
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	62
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	230, 303
Hin1II	CATG	5 cut(s)	26, 525, 569, 618, 815
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	5 cut(s)	167, 437, 586, 635, 1008
HphI	GGTGA	2 cut(s)	20, 249
Hpy166II	GTNNAC	4 cut(s)	28, 176, 621, 1012
Hpy188I	TCNGA	9 cut(s)	100, 148, 166, 244, 416, 729, 754, 832, 1002
Hpy188III	TCNNGA	4 cut(s)	104, 311, 719, 989
Hpy8I	GTNNAC	4 cut(s)	28, 176, 621, 1012
HpyAV	CCTTC	2 cut(s)	411, 904
HpyCH4III	ACNGT	2 cut(s)	424, 749
HpyCH4V	TGCA	7 cut(s)	77, 468, 548, 632, 811, 823, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	3 cut(s)	145, 625, 889
Hsp92II	CATG	5 cut(s)	26, 525, 569, 618, 815
Kzo9I	GATC	6 cut(s)	100, 590, 706, 761, 817, 997
LguI	GCTCTTC	1 cut(s)	843
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	5 cut(s)	398, 745, 798, 949, 955
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	4 cut(s)	430, 524, 662, 695
MalI	GATC	6 cut(s)	102, 592, 708, 763, 819, 999
MboI	GATC	6 cut(s)	100, 590, 706, 761, 817, 997
MboII	GAAGA	7 cut(s)	26, 153, 308, 591, 644, 716, 860
MflI	RGATCY	2 cut(s)	706, 817
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	7 cut(s)	52, 86, 320, 580, 825, 856, 869
MlyI	GAGTC	2 cut(s)	431, 1017
MmeI	TCCRAC	1 cut(s)	143
Mph1103I	ATGCAT	1 cut(s)	813
MseI	TTAA	2 cut(s)	405, 873
MspA1I	CMGCKG	2 cut(s)	287, 380
MspCI	CTTAAG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	386
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	6 cut(s)	100, 590, 706, 761, 817, 997
NlaIII	CATG	5 cut(s)	26, 525, 569, 618, 815
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	813
NspI	RCATGY	2 cut(s)	26, 569
PciI	ACATGT	2 cut(s)	22, 565
PciSI	GCTCTTC	1 cut(s)	843
PfeI	GAWTC	3 cut(s)	167, 586, 635
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	2 cut(s)	431, 1016
PpsI	GAGTC	2 cut(s)	431, 1016
PscI	ACATGT	2 cut(s)	22, 565
PspPI	GGNCC	2 cut(s)	302, 972
PstNI	CAGNNNCTG	2 cut(s)	98, 758
PsuI	RGATCY	2 cut(s)	706, 817
PsyI	GACNNNGTC	1 cut(s)	356
PvuII	CAGCTG	2 cut(s)	287, 380
RsaI	GTAC	3 cut(s)	175, 622, 936
RsaNI	GTAC	3 cut(s)	174, 621, 935
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	2 cut(s)	405, 873
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	6 cut(s)	100, 590, 706, 761, 817, 997
Sau96I	GGNCC	2 cut(s)	302, 972
SchI	GAGTC	2 cut(s)	431, 1017
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	5 cut(s)	398, 745, 798, 949, 955
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	972
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	7 cut(s)	52, 86, 320, 580, 825, 856, 869
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	614
TaaI	ACNGT	2 cut(s)	424, 749
TaqI	TCGA	1 cut(s)	589
TaqII	GACCGA	1 cut(s)	960
TasI	AATT	7 cut(s)	52, 86, 320, 580, 825, 856, 869
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	167, 586, 635
Tru1I	TTAA	2 cut(s)	405, 873
Tru9I	TTAA	2 cut(s)	405, 873
TscAI	CASTG	1 cut(s)	771
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	5 cut(s)	26, 192, 267, 627, 692
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	1 cut(s)	771
Tth111I	GACNNNGTC	1 cut(s)	356
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	972
XapI	RAATTY	3 cut(s)	320, 825, 856
XceI	RCATGY	2 cut(s)	26, 569
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.