Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Reverse (-)

35140748 .. 35143772

Gene Structure 3025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG322800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGCGTCTCCAGCTATGGCACCAGTTCAAGACGATGATGATGATCAATATGGTGAGATTTCCTTTAGTCCTGCTGCTGTTGGGGTCCAATTGAAGGATCAATTATCTTCTGGAAATGACTATGCTCCCAAGGTGAGGAAACCATACACGATCACGAAACAGAGAGAGAGATGGACAGAGGAAGAGCATAACAAATTCCTTGAAGCTCTAAAACTCCATGGTCGGGCATGGCGAAAGATACAAGACCATGTTGGCAGCAAGACTGCGGTTCAGATTCGAAGTCATGCTCAGAAATTCTTTTCTAAGGTTGCTCGTGACCCAGATGGTATCAACACAAGCTCTGCAGATCCCATTGACATTCCTCCTCCTAGGCCAAAACGGAAACCAATGCGTCCTTACCCCCGAAAACATGTTCACCCTCTTCATACGGAAACCTCTAATCTAGAGCAGCCAATAAGGTCTGCACCTAAAAAATTATCAGTTTCTGAGATTGAAAACCAATCTCCAACATCAGTATTATCTCCAATGGGCTCAGATACAATCGGTTCTTCTGATTCAAGTACACCTAGTGGTAGTCTATCCCCTGTTTCATTGGTTGCTGGTGTCCAAAATGAGGCCATAAATCATTCTGAACAACAGCCATCACCAGAGGAAAGTAGGACTTCATTATCAGCTGTAGCAGAAGATGGCCCACTTCCTGACAAGAAATTTTCTGTGAAGCTGGAGTTATTTCCCACAGACAATGTCTGTGATAGTGGCGGTTCAGCTGATGAGGCATCTGCCAGAAGCCTTAAGCTTTTCGGAAGGACTGTATTGGTCACAGACTCCCACCGACCTCTCTCTGGTGGAACTTGCAAGTCAATCTCTTATGACACGCAAGAGGAGAAATGTGGGCAAACATCAATACCATATAACTTTATGCCTATTCAATGTGCATTTGGGAATGTGGAACATGTTTGGAATAGACATCAACTCATCCATTTTCCTCAATGTCAGAATGAGAATTGGAATCGATCTGGTTCTTCTAATCTTATACCATGGTGTACCTTAGGTGCAGATTCATCCGTTCCATTTCTTCCATTCAGTAACCAGCAGACAATGAAATCATATTTTGATTGTAACCTTGAAGATCCCCACGATAAAGATGTTCAGAAAGAAAGTTCTTGGAACGGTTCAGATGCTGGATCAGTAAGTGATGAGGAAAATGGAGGCAAATGTTTAGATGTAGAGATGCATGGGGATCTGCAAATTTCTGAAAAAGAAAAAGTTGAAGAGCCGAATTCGGTTTTTCAATTTAAGGCGAGTAAAAACTCAGCCTTCTCTAAACTGAAGCCTGAAAAGTGTAAAAAAGGATTTGTACCATATAAAAGATGTATGGTGGATGCAGATGCTCGGTACTCAACTTCAGGTCAAGACAGGGATCAGAAAAGAGTCCACCTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

481

Amino Acids

53.31

Weight (kDa)

6.13

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	55 - 98	7.7e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AciI	CCGC	2 cut(s)	266, 759
AclWI	GGATC	6 cut(s)	105, 341, 1124, 1192, 1248, 1428
AcsI	RAATTY	5 cut(s)	194, 293, 707, 1248, 1279
AcuI	CTGAAG	2 cut(s)	1349, 1389
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	569
AfaI	GTAC	4 cut(s)	562, 1045, 1359, 1397
AfiI	CCNNNNNNNGG	5 cut(s)	94, 135, 223, 613, 842
AflII	CTTAAG	1 cut(s)	791
AflIII	ACRYGT	2 cut(s)	409, 952
AgsI	TTSAA	9 cut(s)	29, 94, 203, 494, 558, 929, 1127, 1271, 1292
AluBI	AGCT	7 cut(s)	14, 206, 339, 674, 721, 767, 796
AluI	AGCT	7 cut(s)	14, 206, 339, 674, 721, 767, 796
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	6 cut(s)	105, 341, 1124, 1192, 1248, 1428
AlwNI	CAGNNNCTG	2 cut(s)	485, 1181
AoxI	GGCC	3 cut(s)	371, 615, 688
ApeKI	GCWGC	3 cut(s)	74, 255, 448
ApoI	RAATTY	5 cut(s)	194, 293, 707, 1248, 1279
AspA2I	CCTAGG	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	85, 689
AsuHPI	GGTGA	4 cut(s)	65, 145, 407, 636
AsuII	TTCGAA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	85
AvrII	CCTAGG	1 cut(s)	368
AxyI	CCTNAGG	1 cut(s)	1048
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	533
BauI	CACGAG	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	61, 267, 460
BccI	CCATC	4 cut(s)	165, 317, 649, 680
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	3 cut(s)	369, 443, 567
BfmI	CTRYAG	2 cut(s)	342, 675
BfrI	CTTAAG	1 cut(s)	791
BisI	GCNGC	3 cut(s)	75, 256, 449
BlnI	CCTAGG	1 cut(s)	368
BlsI	GCNGC	3 cut(s)	76, 257, 450
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	85, 689
BmiI	GGNNCC	2 cut(s)	21, 86
BmsI	GCATC	5 cut(s)	785, 1168, 1221, 1372, 1378
BpmI	CTGGAG	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	1012
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	129, 217, 368, 1037
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 135, 223, 613, 842
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	1048
Bse8I	GATNNNNATC	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	1012
BseDI	CCNNGG	4 cut(s)	129, 217, 368, 1037
BseGI	GGATG	3 cut(s)	975, 1061, 1387
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	5 cut(s)	94, 135, 223, 613, 842
BseMII	CTCAG	4 cut(s)	302, 477, 546, 1326
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	354, 896
BseXI	GCAGC	3 cut(s)	61, 267, 460
BsgI	GTGCAG	2 cut(s)	447, 1074
BshFI	GGCC	3 cut(s)	373, 617, 690
BshNI	GGYRCC	1 cut(s)	19
BshVI	ATCGAT	1 cut(s)	1012
BslI	CCNNNNNNNGG	5 cut(s)	94, 135, 223, 613, 842
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	3 cut(s)	373, 617, 690
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	9 cut(s)	43, 97, 150, 346, 1013, 1129, 1184, 1240, 1420
Bsp19I	CCATGG	2 cut(s)	217, 1037
BspACI	CCGC	2 cut(s)	266, 759
BspANI	GGCC	3 cut(s)	373, 617, 690
BspCNI	CTCAG	4 cut(s)	301, 478, 545, 1325
BspDI	ATCGAT	1 cut(s)	1012
BspLI	GGNNCC	2 cut(s)	21, 86
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	6 cut(s)	105, 341, 1124, 1192, 1248, 1428
BspQI	GCTCTTC	2 cut(s)	177, 1266
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	791
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	4 cut(s)	129, 217, 368, 1037
BssMI	GATC	9 cut(s)	43, 97, 150, 346, 1013, 1129, 1184, 1240, 1420
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	4 cut(s)	129, 217, 368, 1037
Bst2BI	CACGAG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	811, 1172
Bst6I	CTCTTC	3 cut(s)	177, 426, 1266
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	791
BstBI	TTCGAA	1 cut(s)	277
BstDEI	CTNAG	6 cut(s)	288, 303, 486, 532, 1048, 1312
BstDSI	CCRYGG	2 cut(s)	217, 1037
BstF5I	GGATG	3 cut(s)	975, 1061, 1387
BstKTI	GATC	9 cut(s)	46, 100, 153, 349, 1016, 1132, 1187, 1243, 1423
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	9 cut(s)	43, 97, 150, 346, 1013, 1129, 1184, 1240, 1420
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 773
BstNSI	RCATGY	2 cut(s)	413, 956
BstSFI	CTRYAG	2 cut(s)	342, 675
BstV1I	GCAGC	3 cut(s)	61, 267, 460
BstX2I	RGATCY	3 cut(s)	346, 1129, 1240
BstYI	RGATCY	3 cut(s)	346, 1129, 1240
Bsu15I	ATCGAT	1 cut(s)	1012
Bsu36I	CCTNAGG	1 cut(s)	1048
BsuRI	GGCC	3 cut(s)	373, 617, 690
BsuTUI	ATCGAT	1 cut(s)	1012
BtgI	CCRYGG	2 cut(s)	217, 1037
BtsCI	GGATG	3 cut(s)	975, 1061, 1387
CaiI	CAGNNNCTG	2 cut(s)	485, 1181
Cfr13I	GGNCC	2 cut(s)	85, 689
ClaI	ATCGAT	1 cut(s)	1012
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	4 cut(s)	561, 1044, 1358, 1396
CviAII	CATG	8 cut(s)	218, 228, 248, 284, 410, 953, 1038, 1235
CviQI	GTAC	4 cut(s)	561, 1044, 1358, 1396
DdeI	CTNAG	6 cut(s)	288, 303, 486, 532, 1048, 1312
DpnI	GATC	9 cut(s)	45, 99, 152, 348, 1015, 1131, 1186, 1242, 1422
DpnII	GATC	9 cut(s)	43, 97, 150, 346, 1013, 1129, 1184, 1240, 1420
DraIII	CACNNNGTG	1 cut(s)	569
Eam1104I	CTCTTC	3 cut(s)	177, 426, 1266
EarI	CTCTTC	3 cut(s)	177, 426, 1266
Eco130I	CCWWGG	4 cut(s)	129, 217, 368, 1037
Eco24I	GRGCYC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	1349, 1389
Eco81I	CCTNAGG	1 cut(s)	1048
EcoRI	GAATTC	1 cut(s)	1279
EcoT14I	CCWWGG	4 cut(s)	129, 217, 368, 1037
EcoT22I	ATGCAT	1 cut(s)	1236
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	4 cut(s)	129, 217, 368, 1037
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	8 cut(s)	221, 231, 251, 287, 413, 956, 1041, 1238
FalI	AAGNNNNNCTT	2 cut(s)	646, 678
FatI	CATG	8 cut(s)	217, 227, 247, 283, 409, 952, 1037, 1234
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	75, 256, 449
FokI	GGATG	3 cut(s)	962, 1048, 1394
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	3 cut(s)	75, 256, 449
FspBI	CTAG	3 cut(s)	369, 443, 567
GluI	GCNGC	3 cut(s)	75, 256, 449
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	3 cut(s)	373, 617, 690
HgaI	GACGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	221, 231, 251, 287, 413, 956, 1041, 1238
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	6 cut(s)	274, 554, 824, 1009, 1058, 1431
HphI	GGTGA	4 cut(s)	65, 145, 407, 636
Hpy166II	GTNNAC	4 cut(s)	415, 563, 1044, 1435
Hpy188III	TCNNGA	7 cut(s)	29, 111, 154, 314, 443, 698, 1412
Hpy8I	GTNNAC	4 cut(s)	415, 563, 1044, 1435
HpyAV	CCTTC	3 cut(s)	88, 798, 1327
HpyCH4III	ACNGT	2 cut(s)	811, 1172
HpyCH4V	TGCA	8 cut(s)	344, 464, 855, 935, 1055, 1234, 1246, 1385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 773
HpyF3I	CTNAG	6 cut(s)	288, 303, 486, 532, 1048, 1312
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	8 cut(s)	221, 231, 251, 287, 413, 956, 1041, 1238
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	9 cut(s)	43, 97, 150, 346, 1013, 1129, 1184, 1240, 1420
LguI	GCTCTTC	2 cut(s)	177, 1266
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	3 cut(s)	61, 267, 460
LweI	GCATC	5 cut(s)	785, 1168, 1221, 1372, 1378
MaeI	CTAG	3 cut(s)	369, 443, 567
MaeIII	GTNAC	4 cut(s)	314, 817, 1085, 1118
MalI	GATC	9 cut(s)	45, 99, 152, 348, 1015, 1131, 1186, 1242, 1422
MboI	GATC	9 cut(s)	43, 97, 150, 346, 1013, 1129, 1184, 1240, 1420
MboII	GAAGA	9 cut(s)	99, 194, 413, 540, 695, 1014, 1067, 1139, 1283
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	3 cut(s)	346, 1129, 1240
MhlI	GDGCHC	1 cut(s)	533
MlyI	GAGTC	2 cut(s)	818, 1440
MmeI	TCCRAC	1 cut(s)	530
Mph1103I	ATGCAT	1 cut(s)	1236
MseI	TTAA	2 cut(s)	792, 1296
MspA1I	CMGCKG	2 cut(s)	674, 767
MspCI	CTTAAG	1 cut(s)	791
MunI	CAATTG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	11, 773
NcoI	CCATGG	2 cut(s)	217, 1037
NdeII	GATC	9 cut(s)	43, 97, 150, 346, 1013, 1129, 1184, 1240, 1420
NlaIII	CATG	8 cut(s)	221, 231, 251, 287, 413, 956, 1041, 1238
NlaIV	GGNNCC	2 cut(s)	21, 86
NmuCI	GTSAC	2 cut(s)	314, 817
NsiI	ATGCAT	1 cut(s)	1236
NspI	RCATGY	2 cut(s)	413, 956
NspV	TTCGAA	1 cut(s)	277
PciI	ACATGT	2 cut(s)	409, 952
PciSI	GCTCTTC	2 cut(s)	177, 1266
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	4 cut(s)	274, 554, 1009, 1058
PflFI	GACNNNGTC	1 cut(s)	743
PkrI	GCNGC	3 cut(s)	76, 257, 450
PleI	GAGTC	2 cut(s)	818, 1439
PpsI	GAGTC	2 cut(s)	818, 1439
PscI	ACATGT	2 cut(s)	409, 952
PspN4I	GGNNCC	2 cut(s)	21, 86
PspPI	GGNCC	2 cut(s)	85, 689
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	2 cut(s)	485, 1181
PsuI	RGATCY	3 cut(s)	346, 1129, 1240
PsyI	GACNNNGTC	1 cut(s)	743
PvuII	CAGCTG	2 cut(s)	674, 767
RsaI	GTAC	4 cut(s)	562, 1045, 1359, 1397
RsaNI	GTAC	4 cut(s)	561, 1044, 1358, 1396
SapI	GCTCTTC	2 cut(s)	177, 1266
SaqAI	TTAA	2 cut(s)	792, 1296
SatI	GCNGC	3 cut(s)	75, 256, 449
Sau3AI	GATC	9 cut(s)	43, 97, 150, 346, 1013, 1129, 1184, 1240, 1420
Sau96I	GGNCC	2 cut(s)	85, 689
SchI	GAGTC	2 cut(s)	818, 1440
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	5 cut(s)	785, 1168, 1221, 1372, 1378
SfcI	CTRYAG	2 cut(s)	342, 675
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
SsiI	CCGC	2 cut(s)	266, 759
SspMI	CTAG	3 cut(s)	369, 443, 567
StyI	CCWWGG	4 cut(s)	129, 217, 368, 1037
TaaI	ACNGT	2 cut(s)	811, 1172
TaqI	TCGA	2 cut(s)	277, 1012
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	4 cut(s)	274, 554, 1009, 1058
Tru1I	TTAA	2 cut(s)	792, 1296
Tru9I	TTAA	2 cut(s)	792, 1296
TseFI	GTSAC	2 cut(s)	314, 817
TseI	GCWGC	3 cut(s)	74, 255, 448
Tsp45I	GTSAC	2 cut(s)	314, 817
TspDTI	ATGAA	5 cut(s)	413, 579, 654, 1050, 1115
TspGWI	ACGGA	3 cut(s)	394, 443, 1054
Tth111I	GACNNNGTC	1 cut(s)	743
Vha464I	CTTAAG	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	5 cut(s)	194, 293, 707, 1248, 1279
XbaI	TCTAGA	1 cut(s)	442
XceI	RCATGY	2 cut(s)	413, 956
XmaJI	CCTAGG	1 cut(s)	368
XspI	CTAG	3 cut(s)	369, 443, 567
Zsp2I	ATGCAT	1 cut(s)	1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.