Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8203112.1

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 682

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8203112.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

aagcttttcggaaggactgtattggtcacagactcccaccgacctctctctggtggaacttgcaagtcaatctcttatgacacgcaagaggagaaatgtgggcaaacatcaataccatataactttatgcctattcaatgtgcatttgggaatgtggaacatgtttggaatagacatcaactcatccattttcctcaatgtcaaaatgagaattggaatcgatctggttcttctaatcttataccatggtgtaccttaggtgcagattcatccgttccatttcttccattcagtaaccagcagacaatgaaatcatattttgattgtaaccttgaagatccccacgataaagatgttcagaaagaaagttcttggaacggttcagatgctggatcagtaagtgatgaggaaaatggaggcaaatgtttagatgtagagatgcatggggatctgcaaatttctgaaaaagaaaaagttgaagagccgatatcgatgctcggtactcaacttcaggtcaagacagggatcagaaaagagtccacctttgttagtagttgtgatactgttgagggtccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

192

Amino Acids

21.42

Weight (kDa)

4.9

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	332, 400, 456, 533
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	2 cut(s)	253, 502
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	137, 335, 479
AluBI	AGCT	1 cut(s)	4
AluI	AGCT	1 cut(s)	4
AlwI	GGATC	4 cut(s)	332, 400, 456, 533
AlwNI	CAGNNNCTG	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	572
AxyI	CCTNAGG	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	573
BmsI	GCATC	3 cut(s)	376, 429, 483
Bsa29I	ATCGAT	2 cut(s)	220, 491
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse21I	CCTNAGG	1 cut(s)	256
BseCI	ATCGAT	2 cut(s)	220, 491
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	2 cut(s)	183, 269
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	282
BshVI	ATCGAT	2 cut(s)	220, 491
BslI	CCNNNNNNNGG	1 cut(s)	50
Bsp143I	GATC	5 cut(s)	221, 337, 392, 448, 525
Bsp19I	CCATGG	1 cut(s)	245
BspDI	ATCGAT	2 cut(s)	220, 491
BspLI	GGNNCC	1 cut(s)	573
BspPI	GGATC	4 cut(s)	332, 400, 456, 533
BspQI	GCTCTTC	1 cut(s)	474
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	5 cut(s)	221, 337, 392, 448, 525
BssT1I	CCWWGG	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	19, 380, 565
Bst6I	CTCTTC	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	256
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	183, 269
BstKTI	GATC	5 cut(s)	224, 340, 395, 451, 528
BstMBI	GATC	5 cut(s)	221, 337, 392, 448, 525
BstNSI	RCATGY	1 cut(s)	164
BstX2I	RGATCY	2 cut(s)	337, 448
BstYI	RGATCY	2 cut(s)	337, 448
Bsu15I	ATCGAT	2 cut(s)	220, 491
Bsu36I	CCTNAGG	1 cut(s)	256
BsuTUI	ATCGAT	2 cut(s)	220, 491
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	183, 269
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	572
ClaI	ATCGAT	2 cut(s)	220, 491
Csp6I	GTAC	2 cut(s)	252, 501
CviAII	CATG	3 cut(s)	161, 246, 443
CviJI	RGCY	2 cut(s)	4, 484
CviKI_1	RGCY	2 cut(s)	4, 484
CviQI	GTAC	2 cut(s)	252, 501
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	5 cut(s)	223, 339, 394, 450, 527
DpnII	GATC	5 cut(s)	221, 337, 392, 448, 525
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	572
Eco57I	CTGAAG	1 cut(s)	494
Eco81I	CCTNAGG	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	3 cut(s)	164, 249, 446
FaiI	YATR	9 cut(s)	78, 118, 120, 128, 162, 242, 247, 316, 444
FatI	CATG	3 cut(s)	160, 245, 442
FokI	GGATG	2 cut(s)	170, 256
Hin1II	CATG	3 cut(s)	164, 249, 446
HindIII	AAGCTT	1 cut(s)	2
HinfI	GANTC	4 cut(s)	32, 217, 266, 536
Hpy166II	GTNNAC	2 cut(s)	252, 540
Hpy188I	TCNGA	5 cut(s)	11, 360, 385, 463, 530
Hpy188III	TCNNGA	1 cut(s)	517
Hpy8I	GTNNAC	2 cut(s)	252, 540
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	3 cut(s)	19, 380, 565
HpyCH4V	TGCA	5 cut(s)	63, 143, 263, 442, 454
HpyF3I	CTNAG	1 cut(s)	256
Hsp92II	CATG	3 cut(s)	164, 249, 446
Kzo9I	GATC	5 cut(s)	221, 337, 392, 448, 525
LguI	GCTCTTC	1 cut(s)	474
LpnPI	CCDG	6 cut(s)	36, 210, 311, 375, 497, 507
LweI	GCATC	3 cut(s)	376, 429, 483
MaeIII	GTNAC	3 cut(s)	25, 293, 326
MalI	GATC	5 cut(s)	223, 339, 394, 450, 527
MboI	GATC	5 cut(s)	221, 337, 392, 448, 525
MboII	GAAGA	4 cut(s)	222, 275, 347, 491
MflI	RGATCY	2 cut(s)	337, 448
MluCI	AATT	2 cut(s)	211, 456
MlyI	GAGTC	2 cut(s)	26, 545
MnlI	CCTC	6 cut(s)	54, 82, 204, 400, 410, 562
Mph1103I	ATGCAT	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	5 cut(s)	221, 337, 392, 448, 525
NlaIII	CATG	3 cut(s)	164, 249, 446
NlaIV	GGNNCC	1 cut(s)	573
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	1 cut(s)	164
PciI	ACATGT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	217, 266
PleI	GAGTC	2 cut(s)	26, 544
PpsI	GAGTC	2 cut(s)	26, 544
PpuMI	RGGWCCY	1 cut(s)	572
PscI	ACATGT	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	572
PspN4I	GGNNCC	1 cut(s)	573
PspPI	GGNCC	1 cut(s)	572
PspPPI	RGGWCCY	1 cut(s)	572
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	2 cut(s)	337, 448
RsaI	GTAC	2 cut(s)	253, 502
RsaNI	GTAC	2 cut(s)	252, 501
SapI	GCTCTTC	1 cut(s)	474
Sau3AI	GATC	5 cut(s)	221, 337, 392, 448, 525
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	2 cut(s)	26, 545
SetI	ASST	7 cut(s)	6, 46, 257, 262, 333, 516, 545
SfaNI	GCATC	3 cut(s)	376, 429, 483
SinI	GGWCC	1 cut(s)	572
Sse9I	AATT	2 cut(s)	211, 456
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	3 cut(s)	19, 380, 565
TaqI	TCGA	2 cut(s)	220, 491
TasI	AATT	2 cut(s)	211, 456
TfiI	GAWTC	2 cut(s)	217, 266
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	258, 323
TspGWI	ACGGA	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.