Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Reverse (-)

22547627 .. 22548721

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0241700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGGAGATGATGATGATGAGCAAGAAGCAAACTTGGGGAACAAGTACTCCCAACTCTTGCTCAAATGCTTTGGCCATTCACAGAGACTCACAGACAATATCAAAATCAAAACCCAAAATCAGAATCATCCACATATTTGCACCCGAAATCATCAAGACCGACGTGGCCAATTTCCGGGAGCTAGTCCAGAGACTCACCGGAAAACCATCCGACAACGGCTGCACCAACAACAAGAAGAAGAGGGCGCATGGAGTTCCCAGCAGAGGGTCGGAAGCTCATCATCAGAGAAGTGCATTCATGGCCGAGACCAAGAAAATGGAGCTGATGAGAAGTACCGGAGCCGGTGCCATGTTCCGGGGGTTGGAACAGTTTCCGAGATCGGAGAGAGTGATCAAGGAAGAAGAGATGATGTGGAATGCGGACAAGTCAGGTGGGTTTTTGGAGAGGTTTGCAGATTTGGAAGGGTTTATACAAGAGCTTGGTGAATTTCCTATGCTACCCAATTTGGATTCTTCTTCTGCTTCAAATTCTCACTTGCTGCATGGTTTTGAAGGCACCCAACTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

190

Amino Acids

21.34

Weight (kDa)

8.93

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	46 - 72	1.1e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	347, 557
AciI	CCGC	1 cut(s)	422
AcoI	YGGCCR	3 cut(s)	75, 168, 303
AcsI	RAATTY	2 cut(s)	488, 529
AfaI	GTAC	2 cut(s)	49, 337
AfiI	CCNNNNNNNGG	5 cut(s)	177, 266, 267, 357, 364
AgsI	TTSAA	2 cut(s)	528, 554
AjiI	CACGTC	1 cut(s)	166
AloI	GAACNNNNNNTCC	2 cut(s)	34, 66
AluBI	AGCT	4 cut(s)	184, 278, 325, 481
AluI	AGCT	4 cut(s)	184, 278, 325, 481
Alw26I	GTCTC	3 cut(s)	81, 187, 302
AoxI	GGCC	3 cut(s)	75, 168, 303
ApeKI	GCWGC	2 cut(s)	222, 541
ApoI	RAATTY	2 cut(s)	488, 529
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	250
AsuC2I	CCSGG	2 cut(s)	179, 359
AsuHPI	GGTGA	2 cut(s)	190, 497
BalI	TGGCCA	2 cut(s)	77, 170
BanI	GGYRCC	2 cut(s)	347, 557
BarI	GAAGNNNNNNTAC	2 cut(s)	456, 488
BbvI	GCAGC	2 cut(s)	209, 528
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	2 cut(s)	179, 359
BcoDI	GTCTC	3 cut(s)	81, 187, 302
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	223, 542
BlsI	GCNGC	2 cut(s)	224, 543
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	179, 359
BmgBI	CACGTC	1 cut(s)	166
BmiI	GGNNCC	3 cut(s)	343, 349, 559
BmrFI	CCNGG	2 cut(s)	179, 359
BpuMI	CCSGG	2 cut(s)	179, 359
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	358
BsaWI	WCCGGW	2 cut(s)	200, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	5 cut(s)	177, 266, 267, 357, 364
Bse118I	RCCGGY	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	129, 209
BseLI	CCNNNNNNNGG	5 cut(s)	177, 266, 267, 357, 364
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	209, 528
BseYI	CCCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	208
BshFI	GGCC	3 cut(s)	77, 170, 305
BshNI	GGYRCC	2 cut(s)	347, 557
BsiSI	CCGG	5 cut(s)	178, 201, 339, 345, 358
BslI	CCNNNNNNNGG	5 cut(s)	177, 266, 267, 357, 364
BsmAI	GTCTC	3 cut(s)	81, 187, 302
BsmI	GAATGC	2 cut(s)	296, 424
BsnI	GGCC	3 cut(s)	77, 170, 305
Bso31I	GGTCTC	1 cut(s)	302
Bsp143I	GATC	2 cut(s)	380, 393
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	3 cut(s)	77, 170, 305
BspLI	GGNNCC	3 cut(s)	343, 349, 559
BspT107I	GGYRCC	2 cut(s)	347, 557
BspTNI	GGTCTC	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	2 cut(s)	380, 393
Bst4CI	ACNGT	1 cut(s)	372
Bst6I	CTCTTC	2 cut(s)	236, 399
BstF5I	GGATG	2 cut(s)	129, 209
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	383, 396
BstMAI	GTCTC	3 cut(s)	81, 187, 302
BstMBI	GATC	2 cut(s)	380, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	177, 357
BstV1I	GCAGC	2 cut(s)	209, 528
BstXI	CCANNNNNNTGG	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	77, 170, 305
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	129, 209
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	48, 336
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	4 cut(s)	251, 301, 352, 545
CviJI	RGCY	9 cut(s)	77, 170, 184, 222, 278, 305, 325, 344, 481
CviKI_1	RGCY	9 cut(s)	77, 170, 184, 222, 278, 305, 325, 344, 481
CviQI	GTAC	2 cut(s)	48, 336
DpnI	GATC	2 cut(s)	382, 395
DpnII	GATC	2 cut(s)	380, 393
EaeI	YGGCCR	3 cut(s)	75, 168, 303
Eam1104I	CTCTTC	2 cut(s)	236, 399
EarI	CTCTTC	2 cut(s)	236, 399
Eco31I	GGTCTC	1 cut(s)	302
FaeI	CATG	4 cut(s)	254, 304, 355, 548
FaiI	YATR	7 cut(s)	137, 252, 302, 353, 473, 497, 546
FatI	CATG	4 cut(s)	250, 300, 351, 544
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	223, 542
FokI	GGATG	2 cut(s)	116, 196
Fsp4HI	GCNGC	2 cut(s)	223, 542
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	2 cut(s)	223, 542
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	77, 170, 305
HapII	CCGG	5 cut(s)	178, 201, 339, 345, 358
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	4 cut(s)	254, 304, 355, 548
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	4 cut(s)	89, 126, 195, 512
HpaII	CCGG	5 cut(s)	178, 201, 339, 345, 358
HphI	GGTGA	2 cut(s)	190, 497
Hpy188I	TCNGA	6 cut(s)	125, 214, 274, 288, 378, 385
Hpy188III	TCNNGA	2 cut(s)	157, 190
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	458, 548
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	5 cut(s)	143, 225, 296, 455, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	254, 304, 355, 548
HspAI	GCGC	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	380, 393
LmnI	GCTCC	3 cut(s)	181, 322, 341
LpnPI	CCDG	8 cut(s)	191, 203, 214, 274, 352, 358, 371, 417
Lsp1109I	GCAGC	2 cut(s)	209, 528
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	165
MalI	GATC	2 cut(s)	382, 395
MboI	GATC	2 cut(s)	380, 393
MboII	GAAGA	6 cut(s)	250, 253, 413, 416, 507, 510
MlsI	TGGCCA	2 cut(s)	77, 170
MluCI	AATT	4 cut(s)	172, 488, 505, 529
MluNI	TGGCCA	2 cut(s)	77, 170
MlyI	GAGTC	2 cut(s)	83, 189
MmeI	TCCRAC	3 cut(s)	237, 252, 345
MnlI	CCTC	3 cut(s)	237, 260, 441
Mox20I	TGGCCA	2 cut(s)	77, 170
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	2 cut(s)	77, 170
Msp20I	TGGCCA	2 cut(s)	77, 170
MspI	CCGG	5 cut(s)	178, 201, 339, 345, 358
MspR9I	CCNGG	2 cut(s)	179, 359
Mva1269I	GAATGC	2 cut(s)	296, 424
MwoI	GCNNNNNNNGC	1 cut(s)	302
NciI	CCSGG	2 cut(s)	179, 359
NdeII	GATC	2 cut(s)	380, 393
NlaIII	CATG	4 cut(s)	254, 304, 355, 548
NlaIV	GGNNCC	3 cut(s)	343, 349, 559
NmeAIII	GCCGAG	1 cut(s)	331
PctI	GAATGC	2 cut(s)	296, 424
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	126, 512
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	224, 543
PleI	GAGTC	2 cut(s)	83, 189
PpsI	GAGTC	2 cut(s)	83, 189
PspFI	CCCAGC	1 cut(s)	260
PspN4I	GGNNCC	3 cut(s)	343, 349, 559
RsaI	GTAC	2 cut(s)	49, 337
RsaNI	GTAC	2 cut(s)	48, 336
SatI	GCNGC	2 cut(s)	223, 542
Sau3AI	GATC	2 cut(s)	380, 393
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	2 cut(s)	83, 189
ScrFI	CCNGG	2 cut(s)	179, 359
SetI	ASST	7 cut(s)	168, 186, 280, 327, 436, 452, 483
Sse9I	AATT	4 cut(s)	172, 488, 505, 529
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	177, 357
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	168
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	4 cut(s)	172, 488, 505, 529
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	126, 512
TseI	GCWGC	2 cut(s)	222, 541
TspDTI	ATGAA	1 cut(s)	289
XapI	RAATTY	2 cut(s)	488, 529
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.