Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Forward (+)

22539282 .. 22545750

Gene Structure 6469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0241600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCGACCTTACAGGCCCACCTCTCTGCGATTTCTGCCATCGGCTCCTCCTCTTCATCGTCCTCCTCCCTCTCTTCCACCACCACCACCACTTCACTGGTTTCCGTCGCCACCTGGCCGCAGTCTGCCCGGAAATTCCCCGGAGACCGGAGCCGGAGTCTCCAGAGGTCCGTTGTCCGAGCAATGGTTCAGACGGTCCCCGGAGCTCCGGCCGCCTATGCTAAGGAAATGGAGAGGCTCTCCGCTAAAGAATCACTGCTTCTCGCCTTCAAGGATGCTGGGGGTTTTGAGGCATTAGTCACTGGAAAGACGACAGACATGCAGCGGATTGATGTCAATGAGAGGATTACTGCTTTGGAGCGGGTCAATCCAACACCCCGCCCTACAACGTCGCCCTTTTTGGAAGGACGATGGAATTTCGAGTGGTTTGGGTCCGGAAGCCCAGGTCTATTTGCTGCTAGATTTCTATTAGAGAGATTTCCTTCAACAGTGGCCAGTTTGTCAAAAATGGAGGTGCTCATCAAGGAAGGGAATGCAAAGATTACAGCAAACATGAAAATATTGAACTCGATAGAAAGCAAATTTTCTCTGTCAACCAAGTTGTCTGTGGAGGGACCAGTTAGAATGAAAGAGGAATATGTTGAGGGGATTCTTGACACACCAACAGTTATTGAAGAAACAATACCAGAGCAGCTAAAAGGTGCACTTGGTCAGGCAGTCAACACAGTGCAACAGCTTCCTGTTCCAATTAGGGATGCCTTCGCCAATGGGTTGAGAGTTCCTTTAACTGGAGCTTTCGAGAGACTCTTCATGATTTCCTATCTTGATATGGAGATAATGATCATAAGAGATGCTGCTGGAGTTCCTGAAATACTTACAAGGTTAGATTCACCCTCATCTCCCCTGGCAGAAACCATCACGGAGTATGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

311

Amino Acids

33.78

Weight (kDa)

5.74

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	104 - 288	3.2e-11	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	361
AccIII	TCCGGA	1 cut(s)	434
AciI	CCGC	6 cut(s)	119, 213, 243, 325, 361, 379
AcoI	YGGCCR	3 cut(s)	116, 210, 492
AcsI	RAATTY	3 cut(s)	134, 415, 581
AfiI	CCNNNNNNNGG	3 cut(s)	147, 184, 788
AgsI	TTSAA	4 cut(s)	271, 486, 565, 674
AjnI	CCWGG	3 cut(s)	113, 442, 903
AluBI	AGCT	5 cut(s)	206, 694, 736, 794, 933
AluI	AGCT	5 cut(s)	206, 694, 736, 794, 933
Alw21I	GWGCWC	3 cut(s)	208, 519, 706
Alw26I	GTCTC	3 cut(s)	138, 164, 796
Alw44I	GTGCAC	1 cut(s)	702
Aor13HI	TCCGGA	1 cut(s)	434
AoxI	GGCC	4 cut(s)	15, 116, 210, 492
ApaLI	GTGCAC	1 cut(s)	702
ApeKI	GCWGC	4 cut(s)	322, 455, 691, 854
ApoI	RAATTY	3 cut(s)	134, 415, 581
AspS9I	GGNCC	5 cut(s)	16, 168, 196, 432, 614
AsuC2I	CCSGG	3 cut(s)	130, 141, 201
AsuHPI	GGTGA	1 cut(s)	882
AvaII	GGWCC	4 cut(s)	168, 196, 432, 614
BaeGI	GKGCMC	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	208
BarI	GAAGNNNNNNTAC	2 cut(s)	666, 698
Bbv12I	GWGCWC	3 cut(s)	208, 519, 706
BbvI	GCAGC	4 cut(s)	334, 442, 703, 841
BccI	CCATC	3 cut(s)	47, 405, 923
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	3 cut(s)	115, 444, 905
BclI	TGATCA	1 cut(s)	840
BcnI	CCSGG	3 cut(s)	130, 141, 201
BcoDI	GTCTC	3 cut(s)	138, 164, 796
BfaI	CTAG	1 cut(s)	459
BisI	GCNGC	6 cut(s)	119, 213, 323, 456, 692, 855
BlsI	GCNGC	6 cut(s)	120, 214, 324, 457, 693, 856
Bme1390I	CCNGG	6 cut(s)	115, 130, 141, 201, 444, 905
Bme18I	GGWCC	4 cut(s)	168, 196, 432, 614
BmgT120I	GGNCC	5 cut(s)	16, 168, 196, 432, 614
BmiI	GGNNCC	5 cut(s)	46, 152, 198, 433, 615
BmrFI	CCNGG	6 cut(s)	115, 130, 141, 201, 444, 905
BmsI	GCATC	3 cut(s)	265, 745, 841
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	3 cut(s)	146, 810, 879
Bpu10I	CCTNAGC	1 cut(s)	222
BpuMI	CCSGG	3 cut(s)	130, 141, 201
BsaBI	GATNNNNATC	1 cut(s)	839
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	139, 199, 442, 903
BsaWI	WCCGGW	2 cut(s)	147, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 184, 788
Bse1I	ACTGG	5 cut(s)	102, 307, 495, 617, 793
Bse3DI	GCAATG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	839
BseAI	TCCGGA	1 cut(s)	434
BseBI	CCWGG	3 cut(s)	115, 444, 905
BseDI	CCNNGG	4 cut(s)	139, 199, 442, 903
BseGI	GGATG	2 cut(s)	280, 760
BseJI	GATNNNNATC	1 cut(s)	839
BseLI	CCNNNNNNNGG	3 cut(s)	147, 184, 788
BseMI	GCAATG	1 cut(s)	189
BseNI	ACTGG	5 cut(s)	102, 307, 495, 617, 793
BseRI	GAGGAG	3 cut(s)	37, 40, 55
BseSI	GKGCMC	1 cut(s)	706
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	4 cut(s)	334, 442, 703, 841
BseYI	CCCAGC	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	17, 118, 212, 494
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	3 cut(s)	208, 519, 706
BsiSI	CCGG	7 cut(s)	130, 141, 148, 154, 201, 209, 435
BslFI	GGGAC	2 cut(s)	182, 627
BslI	CCNNNNNNNGG	3 cut(s)	147, 184, 788
BsmAI	GTCTC	3 cut(s)	138, 164, 796
BsmFI	GGGAC	2 cut(s)	182, 627
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	4 cut(s)	17, 118, 212, 494
Bso31I	GGTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	3 cut(s)	208, 519, 706
Bsp13I	TCCGGA	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	840
BspACI	CCGC	6 cut(s)	119, 213, 243, 325, 361, 379
BspANI	GGCC	4 cut(s)	17, 118, 212, 494
BspEI	TCCGGA	1 cut(s)	434
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	5 cut(s)	46, 152, 198, 433, 615
BspTNI	GGTCTC	1 cut(s)	138
BsrBI	CCGCTC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	5 cut(s)	102, 307, 495, 617, 793
BssECI	CCNNGG	4 cut(s)	139, 199, 442, 903
BssMI	GATC	1 cut(s)	840
Bst2UI	CCWGG	3 cut(s)	115, 444, 905
Bst4CI	ACNGT	4 cut(s)	196, 490, 667, 727
Bst6I	CTCTTC	3 cut(s)	58, 79, 812
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	280, 760
BstKTI	GATC	1 cut(s)	843
BstMAI	GTCTC	3 cut(s)	138, 164, 796
BstMBI	GATC	1 cut(s)	840
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 212, 218
BstNI	CCWGG	3 cut(s)	115, 444, 905
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	6 cut(s)	113, 128, 139, 199, 442, 903
BstSLI	GKGCMC	1 cut(s)	706
BstV1I	GCAGC	4 cut(s)	334, 442, 703, 841
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	4 cut(s)	17, 118, 212, 494
BtsCI	GGATG	2 cut(s)	280, 760
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	5 cut(s)	95, 254, 300, 495, 732
CciI	TCATGA	1 cut(s)	810
Cfr13I	GGNCC	5 cut(s)	16, 168, 196, 432, 614
CviAII	CATG	3 cut(s)	319, 553, 811
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	842
DpnII	GATC	1 cut(s)	840
EaeI	YGGCCR	3 cut(s)	116, 210, 492
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	3 cut(s)	58, 79, 812
EarI	CTCTTC	3 cut(s)	58, 79, 812
Ecl136II	GAGCTC	1 cut(s)	206
EclXI	CGGCCG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	4 cut(s)	168, 196, 432, 614
Eco52I	CGGCCG	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	113, 442, 903
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	3 cut(s)	322, 556, 814
FaiI	YATR	8 cut(s)	219, 320, 554, 639, 812, 830, 845, 927
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	2 cut(s)	182, 627
FatI	CATG	3 cut(s)	318, 552, 810
FauI	CCCGC	2 cut(s)	354, 386
FbaI	TGATCA	1 cut(s)	840
Fnu4HI	GCNGC	6 cut(s)	119, 213, 323, 456, 692, 855
FokI	GGATG	2 cut(s)	287, 767
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	6 cut(s)	119, 213, 323, 456, 692, 855
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	6 cut(s)	119, 213, 323, 456, 692, 855
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	3 cut(s)	146, 810, 879
HaeIII	GGCC	4 cut(s)	17, 118, 212, 494
HapII	CCGG	7 cut(s)	130, 141, 148, 154, 201, 209, 435
Hin1II	CATG	3 cut(s)	322, 556, 814
HincII	GTYRAC	2 cut(s)	594, 721
HindII	GTYRAC	2 cut(s)	594, 721
HinfI	GANTC	5 cut(s)	157, 251, 649, 804, 887
HpaII	CCGG	7 cut(s)	130, 141, 148, 154, 201, 209, 435
HphI	GGTGA	1 cut(s)	882
Hpy166II	GTNNAC	3 cut(s)	594, 704, 721
Hpy188I	TCNGA	2 cut(s)	179, 192
Hpy188III	TCNNGA	7 cut(s)	163, 435, 653, 799, 811, 824, 866
Hpy8I	GTNNAC	3 cut(s)	594, 704, 721
Hpy99I	CGWCG	2 cut(s)	110, 394
HpyAV	CCTTC	5 cut(s)	277, 398, 492, 521, 769
HpyCH4III	ACNGT	4 cut(s)	196, 490, 667, 727
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	322, 536, 704, 730
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 212, 218
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	3 cut(s)	322, 556, 814
Kpn2I	TCCGGA	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	1 cut(s)	840
LmnI	GCTCC	6 cut(s)	50, 150, 203, 211, 358, 791
Lsp1109I	GCAGC	4 cut(s)	334, 442, 703, 841
LweI	GCATC	3 cut(s)	265, 745, 841
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	842
MbiI	CCGCTC	1 cut(s)	361
MboI	GATC	1 cut(s)	840
MboII	GAAGA	4 cut(s)	45, 66, 686, 799
MhlI	GDGCHC	3 cut(s)	208, 519, 706
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	4 cut(s)	134, 415, 581, 747
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	166, 798
MmeI	TCCRAC	1 cut(s)	395
Mox20I	TGGCCA	1 cut(s)	494
MroI	TCCGGA	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	1 cut(s)	785
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	7 cut(s)	130, 141, 148, 154, 201, 209, 435
MspR9I	CCNGG	6 cut(s)	115, 130, 141, 201, 444, 905
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	3 cut(s)	115, 444, 905
MwoI	GCNNNNNNNGC	3 cut(s)	35, 212, 218
NciI	CCSGG	3 cut(s)	130, 141, 201
NdeII	GATC	1 cut(s)	840
NlaIII	CATG	3 cut(s)	322, 556, 814
NlaIV	GGNNCC	5 cut(s)	46, 152, 198, 433, 615
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	322
PagI	TCATGA	1 cut(s)	810
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	251, 649, 887
PkrI	GCNGC	6 cut(s)	120, 214, 324, 457, 693, 856
PleI	GAGTC	2 cut(s)	165, 798
PpsI	GAGTC	2 cut(s)	165, 798
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	3 cut(s)	113, 442, 903
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	3 cut(s)	113, 442, 903
PspN4I	GGNNCC	5 cut(s)	46, 152, 198, 433, 615
PspPI	GGNCC	5 cut(s)	16, 168, 196, 432, 614
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	785
SatI	GCNGC	6 cut(s)	119, 213, 323, 456, 692, 855
Sau3AI	GATC	1 cut(s)	840
Sau96I	GGNCC	5 cut(s)	16, 168, 196, 432, 614
SchI	GAGTC	2 cut(s)	166, 798
ScrFI	CCNGG	6 cut(s)	115, 130, 141, 201, 444, 905
SduI	GDGCHC	3 cut(s)	208, 519, 706
SfaNI	GCATC	3 cut(s)	265, 745, 841
SinI	GGWCC	4 cut(s)	168, 196, 432, 614
Sse9I	AATT	4 cut(s)	134, 415, 581, 747
SsiI	CCGC	6 cut(s)	119, 213, 243, 325, 361, 379
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	6 cut(s)	113, 128, 139, 199, 442, 903
TaaI	ACNGT	4 cut(s)	196, 490, 667, 727
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	3 cut(s)	420, 569, 798
TasI	AATT	4 cut(s)	134, 415, 581, 747
TauI	GCSGC	2 cut(s)	121, 215
TfiI	GAWTC	3 cut(s)	251, 649, 887
Tru1I	TTAA	1 cut(s)	785
Tru9I	TTAA	1 cut(s)	785
TscAI	CASTG	5 cut(s)	102, 261, 307, 495, 732
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	4 cut(s)	322, 455, 691, 854
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	4 cut(s)	45, 569, 641, 799
TspGWI	ACGGA	3 cut(s)	94, 160, 935
TspRI	CASTG	5 cut(s)	102, 261, 307, 495, 732
VneI	GTGCAC	1 cut(s)	702
VpaK11BI	GGWCC	4 cut(s)	168, 196, 432, 614
XapI	RAATTY	3 cut(s)	134, 415, 581
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 604
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.