Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8274331.1

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Reverse (-)

25 .. 714

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8274331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgacagaccatgttggcagcaaaactgcggttcagattcgaagtcatgctcagaaattcttttctaaggttgctcgtgacccagatggtatcaacacaagctctgcagatcccattgacattcctcctcctaggccaaaacggaaaccaatgcgtccttacccccgaaaacatgttcaccctcttcatacggaaacctctaatctagagcagccaataaggtctgcacctaaaaaattatcagtttctgagattgaaaaccaatctccaacatcagtattatctccaatgggctcagatacaatcggttcttctgattcaagtacacctagtggtagtctatcccctgtttcattggttgctggtgtccagaatgaggccataaatcattctgaacaacagccatcaccagaggaaagtaggacttcattatcagctgtagcagaagatggcccacttcctgacaagaaattttctgtggtacattcttatcctttcatatctgtccgattttttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

173

Amino Acids

18.76

Weight (kDa)

8.07

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	2 cut(s)	56, 470
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	2 cut(s)	325, 483
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	257, 321
AluBI	AGCT	2 cut(s)	102, 437
AluI	AGCT	2 cut(s)	102, 437
AlwI	GGATC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	3 cut(s)	134, 378, 451
ApeKI	GCWGC	2 cut(s)	18, 211
ApoI	RAATTY	2 cut(s)	56, 470
AspA2I	CCTAGG	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	170, 399
AsuII	TTCGAA	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	30, 223
BccI	CCATC	3 cut(s)	80, 412, 443
BfaI	CTAG	3 cut(s)	132, 206, 330
BfmI	CTRYAG	2 cut(s)	105, 438
BisI	GCNGC	2 cut(s)	19, 212
BlnI	CCTAGG	1 cut(s)	131
BlsI	GCNGC	2 cut(s)	20, 213
BmgT120I	GGNCC	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	65, 240, 309
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	30, 223
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	136, 380, 453
BslI	CCNNNNNNNGG	1 cut(s)	376
BsnI	GGCC	3 cut(s)	136, 380, 453
Bsp119I	TTCGAA	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	3 cut(s)	136, 380, 453
BspCNI	CTCAG	3 cut(s)	64, 241, 308
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	109
BssSI	CACGAG	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	189
BstBI	TTCGAA	1 cut(s)	40
BstDEI	CTNAG	4 cut(s)	51, 66, 249, 295
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	176
BstSFI	CTRYAG	2 cut(s)	105, 438
BstV1I	GCAGC	2 cut(s)	30, 223
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	136, 380, 453
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	324, 482
CviAII	CATG	3 cut(s)	11, 47, 173
CviJI	RGCY	8 cut(s)	102, 136, 214, 294, 380, 403, 437, 453
CviKI_1	RGCY	8 cut(s)	102, 136, 214, 294, 380, 403, 437, 453
CviQI	GTAC	2 cut(s)	324, 482
DdeI	CTNAG	4 cut(s)	51, 66, 249, 295
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DraIII	CACNNNGTG	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	3 cut(s)	14, 50, 176
FaiI	YATR	6 cut(s)	12, 48, 174, 189, 383, 500
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FatI	CATG	3 cut(s)	10, 46, 172
Fnu4HI	GCNGC	2 cut(s)	19, 212
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	19, 212
FspBI	CTAG	3 cut(s)	132, 206, 330
GluI	GCNGC	2 cut(s)	19, 212
HaeIII	GGCC	3 cut(s)	136, 380, 453
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	14, 50, 176
HinfI	GANTC	2 cut(s)	37, 317
HphI	GGTGA	2 cut(s)	170, 399
Hpy166II	GTNNAC	2 cut(s)	178, 326
Hpy188I	TCNGA	7 cut(s)	36, 54, 250, 298, 316, 394, 509
Hpy188III	TCNNGA	4 cut(s)	77, 206, 370, 461
Hpy8I	GTNNAC	2 cut(s)	178, 326
HpyCH4V	TGCA	2 cut(s)	107, 227
HpyF3I	CTNAG	4 cut(s)	51, 66, 249, 295
Hsp92II	CATG	3 cut(s)	14, 50, 176
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	6 cut(s)	96, 348, 360, 383, 423, 474
Lsp1109I	GCAGC	2 cut(s)	30, 223
MaeI	CTAG	3 cut(s)	132, 206, 330
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	176, 303, 458
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	3 cut(s)	56, 236, 470
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	135, 138, 192, 208, 370, 406
MspA1I	CMGCKG	1 cut(s)	437
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	14, 50, 176
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	40
PciI	ACATGT	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	37, 317
PkrI	GCNGC	2 cut(s)	20, 213
PscI	ACATGT	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	2 cut(s)	325, 483
RsaNI	GTAC	2 cut(s)	324, 482
SatI	GCNGC	2 cut(s)	19, 212
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	7 cut(s)	72, 104, 200, 224, 232, 331, 439
SfcI	CTRYAG	2 cut(s)	105, 438
SfuI	TTCGAA	1 cut(s)	40
Sse9I	AATT	3 cut(s)	56, 236, 470
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	3 cut(s)	132, 206, 330
StyI	CCWWGG	1 cut(s)	131
TaqI	TCGA	1 cut(s)	40
TasI	AATT	3 cut(s)	56, 236, 470
TatI	WGTACW	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	37, 317
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	18, 211
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	4 cut(s)	176, 342, 417, 487
TspGWI	ACGGA	2 cut(s)	157, 206
XapI	RAATTY	2 cut(s)	56, 470
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	176
XmaJI	CCTAGG	1 cut(s)	131
XspI	CTAG	3 cut(s)	132, 206, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.