AT5G18170

glutamate dehydrogenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6006035 .. 6008726
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18170.1

Sequence Viewer

Length: 1236 bp
ATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAGTTAGCTGCTAGGCTTCTTGGTCTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAGAAATCAAGGTGGAATGTACCATACCGAAAGACGATGGTACACTAGCATCATTCGTTGGGTTCAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCTGAGGTTGATCCGGATGAAGTGAACGCATTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAAGATTCCTTACGGAGGAGCTAAAGGAGGGATTGGTTGTGATCCTAGCAAGCTCAGTATCTCCGAGCTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATTCATGATCTCATTGGGATTCATACTGATGTTCCAGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTCTTGATGAATACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTGATCTTGGTGGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGCTTTGCTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTGTCATCCAGGGATTTGGTAATGTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCCGTGAGTGACATTACCGGAGCAATCAAGAACAAGGATGGTATCGATATCCCGGCCTTGCTCAAGCATACTAAAGAACACAGAGGTGTCAAAGGGTTTGATGGTGCAGATCCGATCGATCCAAACTCCATACTGGTTGAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAGGGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCATCCAACTGATCCGGACGCGGATGAGATCCTAAGTAAGAAAGGTGTGGTTATTCTCCCGGACATATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGAACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGACTTACATGACTCGCTCTTTCAAGGACTTGAAAGAGATGTGCAAAACTCACTCTTGCGATCTCCGGATGGGAGCTTTCACACTCGGTGTTAATCGTGTGGCTCAAGCTACCATTCTCAGAGGCTGGGGAGCTTAA

Protein Analysis

411

Amino Acids

44.52

Weight (kDa)

6.39

Isoelectric Point (pI)

21.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELFV_dehydrog_N PF02812 33 - 159 2.9e-51 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog PF00208 176 - 408 1.8e-82 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 575
AccBSI CCGCTC 1 cut(s) 355
AccII CGCG 2 cut(s) 548, 956
AccIII TCCGGA 3 cut(s) 229, 949, 1164
AciI CCGC 4 cut(s) 355, 548, 662, 956
AclWI GGATC 7 cut(s) 221, 317, 538, 803, 812, 941, 958
AdeI CACNNNGTG 2 cut(s) 872, 1187
AfaI GTAC 3 cut(s) 118, 139, 577
AfiI CCNNNNNNNGG 4 cut(s) 197, 296, 428, 615
AgsI TTSAA 5 cut(s) 34, 170, 1058, 1123, 1132
AjnI CCWGG 1 cut(s) 633
AleI CACNNNNGTG 1 cut(s) 783
Alw21I GWGCWC 2 cut(s) 351, 600
Alw26I GTCTC 1 cut(s) 537
AlwI GGATC 7 cut(s) 221, 317, 538, 803, 812, 941, 958
AlwNI CAGNNNCTG 1 cut(s) 1224
Ama87I CYCGRG 3 cut(s) 71, 350, 363
Aor13HI TCCGGA 3 cut(s) 229, 949, 1164
AoxI GGCC 1 cut(s) 753
ApeKI GCWGC 5 cut(s) 14, 41, 619, 863, 929
Asp700I GAANNNNTTC 1 cut(s) 1044
Asp718I GGTACC 1 cut(s) 575
AspS9I GGNCC 2 cut(s) 188, 437
AsuC2I CCSGG 2 cut(s) 752, 995
AsuHPI GGTGA 1 cut(s) 1096
AsuII TTCGAA 1 cut(s) 1038
AvaI CYCGRG 3 cut(s) 71, 350, 363
AvaII GGWCC 2 cut(s) 188, 437
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 2 cut(s) 351, 600
BbvI GCAGC 5 cut(s) 26, 28, 631, 875, 941
BccI CCATC 4 cut(s) 128, 731, 794, 1162
BceAI ACGGC 1 cut(s) 686
BciT130I CCWGG 1 cut(s) 635
BciVI GTATCC 1 cut(s) 479
BcnI CCSGG 2 cut(s) 752, 995
BcoDI GTCTC 1 cut(s) 537
BfaI CTAG 4 cut(s) 45, 143, 327, 536
BfmI CTRYAG 2 cut(s) 495, 861
BfuI GTATCC 1 cut(s) 479
BisI GCNGC 7 cut(s) 15, 42, 549, 620, 663, 864, 930
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 7 cut(s) 16, 43, 550, 621, 664, 865, 931
Bme1390I CCNGG 3 cut(s) 635, 752, 995
Bme18I GGWCC 2 cut(s) 188, 437
BmeT110I CYCGRG 3 cut(s) 71, 350, 363
BmgT120I GGNCC 2 cut(s) 188, 437
BmiI GGNNCC 2 cut(s) 190, 577
BmrFI CCNGG 3 cut(s) 635, 752, 995
BmsI GCATC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 2 cut(s) 405, 1035
Bpu1102I GCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 1038
BpuEI CTTGAG 2 cut(s) 746, 1188
BpuMI CCSGG 2 cut(s) 752, 995
Bsa29I ATCGAT 2 cut(s) 744, 816
BsaJI CCNNGG 1 cut(s) 634
BsaWI WCCGGW 4 cut(s) 229, 716, 949, 1164
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 296, 428, 615
Bse1I ACTGG 4 cut(s) 439, 511, 559, 837
Bse21I CCTNAGG 1 cut(s) 219
BseAI TCCGGA 3 cut(s) 229, 949, 1164
BseBI CCWGG 1 cut(s) 635
BseCI ATCGAT 2 cut(s) 744, 816
BseDI CCNNGG 1 cut(s) 634
BseGI GGATG 8 cut(s) 87, 214, 238, 630, 742, 937, 964, 1173
BseLI CCNNNNNNNGG 4 cut(s) 197, 296, 428, 615
BseMII CTCAG 6 cut(s) 210, 266, 349, 389, 455, 1231
BseNI ACTGG 4 cut(s) 439, 511, 559, 837
BseRI GAGGAG 3 cut(s) 312, 576, 1032
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 5 cut(s) 26, 28, 631, 875, 941
BseYI CCCAGC 1 cut(s) 1224
BsgI GTGCAG 1 cut(s) 825
Bsh1236I CGCG 2 cut(s) 548, 956
Bsh1285I CGRYCG 1 cut(s) 816
BshFI GGCC 1 cut(s) 755
BshNI GGYRCC 1 cut(s) 575
BshVI ATCGAT 2 cut(s) 744, 816
BsiEI CGRYCG 1 cut(s) 816
BsiHKAI GWGCWC 2 cut(s) 351, 600
BsiHKCI CYCGRG 3 cut(s) 71, 350, 363
BsiSI CCGG 6 cut(s) 230, 717, 752, 950, 995, 1165
BslFI GGGAC 2 cut(s) 174, 842
BslI CCNNNNNNNGG 4 cut(s) 197, 296, 428, 615
BsmAI GTCTC 1 cut(s) 537
BsmBI CGTCTC 1 cut(s) 537
BsmFI GGGAC 2 cut(s) 174, 842
BsmI GAATGC 2 cut(s) 10, 898
BsnI GGCC 1 cut(s) 755
BsoBI CYCGRG 3 cut(s) 71, 350, 363
Bsp119I TTCGAA 1 cut(s) 1038
Bsp1286I GDGCHC 3 cut(s) 351, 434, 600
Bsp13I TCCGGA 3 cut(s) 229, 949, 1164
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 4 cut(s) 355, 548, 662, 956
BspANI GGCC 1 cut(s) 755
BspCNI CTCAG 6 cut(s) 211, 265, 348, 388, 454, 1230
BspDI ATCGAT 2 cut(s) 744, 816
BspEI TCCGGA 3 cut(s) 229, 949, 1164
BspFNI CGCG 2 cut(s) 548, 956
BspHI TCATGA 2 cut(s) 258, 385
BspLI GGNNCC 2 cut(s) 190, 577
BspMAI CTGCAG 2 cut(s) 499, 865
BspPI GGATC 7 cut(s) 221, 317, 538, 803, 812, 941, 958
BspT104I TTCGAA 1 cut(s) 1038
BspT107I GGYRCC 1 cut(s) 575
BsrBI CCGCTC 1 cut(s) 355
BsrI ACTGG 4 cut(s) 439, 511, 559, 837
BssECI CCNNGG 1 cut(s) 634
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 1 cut(s) 1027
Bst6I CTCTTC 2 cut(s) 553, 1071
BstBI TTCGAA 1 cut(s) 1038
BstC8I GCNNGC 2 cut(s) 332, 495
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 8 cut(s) 87, 214, 238, 630, 742, 937, 964, 1173
BstFNI CGCG 2 cut(s) 548, 956
BstMAI GTCTC 1 cut(s) 537
BstMCI CGRYCG 1 cut(s) 816
BstMWI GCNNNNNNNGC 2 cut(s) 14, 595
BstNI CCWGG 1 cut(s) 635
BstSCI CCNGG 3 cut(s) 633, 750, 993
BstSFI CTRYAG 2 cut(s) 495, 861
BstSLI GKGCMC 1 cut(s) 434
BstUI CGCG 2 cut(s) 548, 956
BstV1I GCAGC 5 cut(s) 26, 28, 631, 875, 941
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 808, 963
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 2 cut(s) 808, 963
Bsu15I ATCGAT 2 cut(s) 744, 816
Bsu36I CCTNAGG 1 cut(s) 219
BsuI GTATCC 1 cut(s) 479
BsuRI GGCC 1 cut(s) 755
BsuTUI ATCGAT 2 cut(s) 744, 816
BtsCI GGATG 8 cut(s) 87, 214, 238, 630, 742, 937, 964, 1173
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 282, 432, 1023
Cac8I GCNNGC 2 cut(s) 332, 495
CaiI CAGNNNCTG 1 cut(s) 1224
CciI TCATGA 2 cut(s) 258, 385
Cfr13I GGNCC 2 cut(s) 188, 437
ClaI ATCGAT 2 cut(s) 744, 816
CseI GACGC 2 cut(s) 554, 962
Csp6I GTAC 3 cut(s) 117, 138, 576
CviAII CATG 6 cut(s) 193, 259, 264, 386, 482, 1108
CviQI GTAC 3 cut(s) 117, 138, 576
DraIII CACNNNGTG 2 cut(s) 872, 1187
Eam1104I CTCTTC 2 cut(s) 553, 1071
EarI CTCTTC 2 cut(s) 553, 1071
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 351
Eco32I GATATC 3 cut(s) 212, 748, 850
Eco47I GGWCC 2 cut(s) 188, 437
Eco53kI GAGCTC 1 cut(s) 349
Eco81I CCTNAGG 1 cut(s) 219
Eco88I CYCGRG 3 cut(s) 71, 350, 363
EcoICRI GAGCTC 1 cut(s) 349
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 633
EcoRV GATATC 3 cut(s) 212, 748, 850
EcoT38I GRGCYC 1 cut(s) 351
Esp3I CGTCTC 1 cut(s) 537
FaeI CATG 6 cut(s) 196, 262, 267, 389, 485, 1111
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 2 cut(s) 174, 842
FatI CATG 6 cut(s) 192, 258, 263, 385, 481, 1107
Fnu4HI GCNGC 7 cut(s) 15, 42, 549, 620, 663, 864, 930
FokI GGATG 8 cut(s) 74, 201, 245, 617, 749, 924, 971, 1180
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 7 cut(s) 15, 42, 549, 620, 663, 864, 930
FspBI CTAG 4 cut(s) 45, 143, 327, 536
GluI GCNGC 7 cut(s) 15, 42, 549, 620, 663, 864, 930
GsaI CCCAGC 1 cut(s) 1228
GsuI CTGGAG 2 cut(s) 405, 1035
HaeIII GGCC 1 cut(s) 755
HapII CCGG 6 cut(s) 230, 717, 752, 950, 995, 1165
HgaI GACGC 2 cut(s) 554, 962
Hin1II CATG 6 cut(s) 196, 262, 267, 389, 485, 1111
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 9 cut(s) 62, 204, 286, 361, 382, 400, 457, 1020, 1111
HpaII CCGG 6 cut(s) 230, 717, 752, 950, 995, 1165
HphI GGTGA 1 cut(s) 1096
Hpy166II GTNNAC 4 cut(s) 140, 241, 360, 1087
Hpy188I TCNGA 9 cut(s) 98, 164, 209, 346, 378, 444, 813, 1050, 1220
Hpy8I GTNNAC 4 cut(s) 140, 241, 360, 1087
HpyAV CCTTC 2 cut(s) 103, 1075
HpyCH4III ACNGT 1 cut(s) 1027
HpyCH4V TGCA 6 cut(s) 182, 497, 806, 863, 1007, 1143
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 595
Hsp92II CATG 6 cut(s) 196, 262, 267, 389, 485, 1111
Kpn2I TCCGGA 3 cut(s) 229, 949, 1164
KpnI GGTACC 1 cut(s) 579
LmnI GCTCC 5 cut(s) 299, 424, 719, 1172, 1229
Lsp1109I GCAGC 5 cut(s) 26, 28, 631, 875, 941
LweI GCATC 1 cut(s) 155
MaeI CTAG 4 cut(s) 45, 143, 327, 536
MaeIII GTNAC 4 cut(s) 502, 707, 1021, 1031
MbiI CCGCTC 1 cut(s) 355
MboII GAAGA 5 cut(s) 74, 391, 570, 703, 1088
MflI RGATCY 2 cut(s) 808, 963
MhlI GDGCHC 3 cut(s) 351, 434, 600
MlyI GAGTC 3 cut(s) 355, 1029, 1105
MmeI TCCRAC 1 cut(s) 965
MroI TCCGGA 3 cut(s) 229, 949, 1164
MroXI GAANNNNTTC 1 cut(s) 1044
MseI TTAA 4 cut(s) 591, 906, 1191, 1234
MslI CAYNNNNRTG 3 cut(s) 177, 408, 783
MspI CCGG 6 cut(s) 230, 717, 752, 950, 995, 1165
MspR9I CCNGG 3 cut(s) 635, 752, 995
Mva1269I GAATGC 2 cut(s) 10, 898
MvaI CCWGG 1 cut(s) 635
MvnI CGCG 2 cut(s) 548, 956
MwoI GCNNNNNNNGC 2 cut(s) 14, 595
NciI CCSGG 2 cut(s) 752, 995
NlaIII CATG 6 cut(s) 196, 262, 267, 389, 485, 1111
NlaIV GGNNCC 2 cut(s) 190, 577
NmuCI GTSAC 3 cut(s) 502, 707, 1021
NspV TTCGAA 1 cut(s) 1038
OliI CACNNNNGTG 1 cut(s) 783
PaeR7I CTCGAG 3 cut(s) 71, 350, 363
PagI TCATGA 2 cut(s) 258, 385
PctI GAATGC 2 cut(s) 10, 898
PdmI GAANNNNTTC 1 cut(s) 1044
PfeI GAWTC 6 cut(s) 62, 204, 286, 382, 400, 457
PfoI TCCNGGA 1 cut(s) 993
PkrI GCNGC 7 cut(s) 16, 43, 550, 621, 664, 865, 931
Ple19I CGATCG 1 cut(s) 816
PleI GAGTC 3 cut(s) 355, 1028, 1105
PpsI GAGTC 3 cut(s) 355, 1028, 1105
PpuMI RGGWCCY 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 633
PspFI CCCAGC 1 cut(s) 1224
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 2 cut(s) 190, 577
PspPI GGNCC 2 cut(s) 188, 437
PspPPI RGGWCCY 1 cut(s) 188
PspXI VCTCGAGB 2 cut(s) 350, 363
PsrI GAACNNNNNNTAC 2 cut(s) 637, 669
PstI CTGCAG 2 cut(s) 499, 865
PstNI CAGNNNCTG 1 cut(s) 1224
PsuI RGATCY 2 cut(s) 808, 963
PvuI CGATCG 1 cut(s) 816
RsaI GTAC 3 cut(s) 118, 139, 577
RsaNI GTAC 3 cut(s) 117, 138, 576
RseI CAYNNNNRTG 3 cut(s) 177, 408, 783
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 4 cut(s) 591, 906, 1191, 1234
SatI GCNGC 7 cut(s) 15, 42, 549, 620, 663, 864, 930
Sau96I GGNCC 2 cut(s) 188, 437
SchI GAGTC 3 cut(s) 355, 1029, 1105
ScrFI CCNGG 3 cut(s) 635, 752, 995
SduI GDGCHC 3 cut(s) 351, 434, 600
SfaNI GCATC 1 cut(s) 155
SfcI CTRYAG 2 cut(s) 495, 861
Sfr274I CTCGAG 3 cut(s) 71, 350, 363
SfuI TTCGAA 1 cut(s) 1038
SinI GGWCC 2 cut(s) 188, 437
SlaI CTCGAG 3 cut(s) 71, 350, 363
SmiMI CAYNNNNRTG 3 cut(s) 177, 408, 783
SmlI CTYRAG 5 cut(s) 71, 350, 363, 761, 1203
SmoI CTYRAG 5 cut(s) 71, 350, 363, 761, 1203
SsiI CCGC 4 cut(s) 355, 548, 662, 956
SspMI CTAG 4 cut(s) 45, 143, 327, 536
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 3 cut(s) 633, 750, 993
TaaI ACNGT 1 cut(s) 1027
TaqI TCGA 6 cut(s) 72, 351, 364, 744, 816, 1038
TauI GCSGC 2 cut(s) 551, 665
TfiI GAWTC 6 cut(s) 62, 204, 286, 382, 400, 457
Tru1I TTAA 4 cut(s) 591, 906, 1191, 1234
Tru9I TTAA 4 cut(s) 591, 906, 1191, 1234
TscAI CASTG 3 cut(s) 282, 439, 1030
TseFI GTSAC 3 cut(s) 502, 707, 1021
TseI GCWGC 5 cut(s) 14, 41, 619, 863, 929
Tsp45I GTSAC 3 cut(s) 502, 707, 1021
TspDTI ATGAA 8 cut(s) 17, 209, 249, 374, 392, 470, 480, 907
TspGWI ACGGA 2 cut(s) 309, 615
TspRI CASTG 3 cut(s) 282, 439, 1030
VpaK11BI GGWCC 2 cut(s) 188, 437
XagI CCTNNNNNAGG 1 cut(s) 294
XhoI CTCGAG 3 cut(s) 71, 350, 363
XmnI GAANNNNTTC 1 cut(s) 1044
XspI CTAG 4 cut(s) 45, 143, 327, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.