Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003303

Physical Location & Seq

Genomic Coordinates Forward (+)

45173958 .. 45175814

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G029340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAACGCTTTAGTAGCAACAAACAGAAATTTTAAGTTGGCTGCTCGACTGTTGGGATTGGACTCGAAGCTTGAACAGAATGATGGCAGTTTGGCTTCATATGTTGGCTTCAGAATTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGCATCAGATATCACCCAGAGGTTGAGCCAGACGAGGTGAATGCCTTAGCACAGCTGATGACATGGAAGACGGCGGTAGCTAACATCCCATATGGTGGTGCCAAGGGTGGGATAGGATGTGATCCAGGGAAGCTCAGTATTTCAGAGCTTGAGAGACTCACCAGAGTTTTCACCCAAAAGATTCATGATCTTATTGGAATCCACACTGATGTTCCAGCACCAGATATGGGCACTGGTCCACAGACCATGGCTTGGATACTTGATGAGTACTCCAAATTCCATGGCTACTCACCTGCAGTTGTCACTGGGAAACCTACTGATCTTGGTGGATCATTGGGAAGAGATGCAGCAACTGGAAGAGGAGTACTTTTTGCAACAGAGGCTTTACTGAATGAGTATGGGAAGACCATCTCCGGACAACGCTTTGTTATACAGGGATTTGGGAATGTGGGATCCTGGGCTGCCCAACTCATTCATGAGAAAGGTGGGAAAATAGTTGCAGTGAGTGACATCAGTGGAGCTATAAAGAACAGCCAAGGACTTGACATTCCAAGCCTACTCAACCATGTCAAGGAACAAAGAGGTGTTAAGGGCTTCCATGGCGGGGAGTCCATACAAGATTCCCACTCAATTTTAACTGAAGACTGTGACATTCTCATTCCTGCAGCACTTGGAGGTGTCATCAACAGGGAAAATGCAAATGATATAAAAGCCAAATTTATTATCGAAGCAGCTAATCATCCCACTGACCCCGAAGCGGATGAGATCTTGTCAAAGAAAGGTGTTGTTATTCTTCCTGATATATATGCAAACTCTGGAGGAGTCACTGTTAGTTACTTCGAATGGGTGCAGAACATCCAAGGTTTCCTGTGGGATGAAGAAAAAGTGAATAATGAGCTGAGGACTTACATGACTAGAGGCTTCAAAAATGTCAAGGAGATGTGCAAAACCCACAACTGTGACCTCCGGATGGGAGCCTTCACTCTCGGAGTTAATCGCGTTGCACGGGCTACTGTCCTCAGGGGGTGGGAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

395

Amino Acids

42.81

Weight (kDa)

6.27

Isoelectric Point (pI)

24.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	21 - 142	1.9e-48	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog	PF00208	159 - 392	7e-83	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03910 AT3G03910 AT5G18170
fragaria_vesca	FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120
malus_domestica	MD12G1003600.v1.1 MD14G1002500.v1.1
prunus_persica	Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1
pyrus_communis	pycom12g00300 pycom14g00020
rosa_chinensis	RchiOBHm_Chr3g0497101
rosa_laevigata	RLG00000022481
rosa_multiflora	Rmu_ssc0000003.1_g000006
rosa_roxburghii	Rroxscaffold_6G00388400
rosa_rugosa	Rorug03G0289600 Rorug03G0289700 Rorug03G0289800 Rorug03G0289900 Rorug03G0290000 Rorug03G0290100 Rorug03G0290100 Rorug03G0290200
rosa_samantha	Rh3AG334100 Rh3BG371200 Rh3CG368200 Rh3DG369200
rosa_wichuraiana	Rw3G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	2 cut(s)	245, 402
AccII	CGCG	1 cut(s)	1149
AccIII	TCCGGA	2 cut(s)	563, 1116
AciI	CCGC	3 cut(s)	224, 753, 908
AclWI	GGATC	4 cut(s)	266, 487, 597, 610
AcsI	RAATTY	4 cut(s)	28, 114, 425, 866
AcuI	CTGAAG	2 cut(s)	94, 810
AfaI	GTAC	2 cut(s)	419, 516
AgsI	TTSAA	3 cut(s)	74, 119, 1075
AjnI	CCWGG	2 cut(s)	274, 605
AleI	CACNNNNGTG	1 cut(s)	1107
AluBI	AGCT	8 cut(s)	70, 205, 230, 283, 298, 671, 884, 1048
AluI	AGCT	8 cut(s)	70, 205, 230, 283, 298, 671, 884, 1048
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	4 cut(s)	266, 487, 597, 610
AlwNI	CAGNNNCTG	1 cut(s)	503
Aor13HI	TCCGGA	2 cut(s)	563, 1116
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	5 cut(s)	41, 497, 611, 815, 881
ApoI	RAATTY	4 cut(s)	28, 114, 425, 866
AspS9I	GGNCC	2 cut(s)	137, 386
AsuHPI	GGTGA	5 cut(s)	155, 199, 301, 313, 432
AsuII	TTCGAA	1 cut(s)	990
AvaII	GGWCC	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	1169
BaeGI	GKGCMC	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	602
BanI	GGYRCC	1 cut(s)	248
BbsI	GAAGAC	3 cut(s)	224, 560, 798
BbvCI	CCTCAGC	1 cut(s)	1049
BbvI	GCAGC	5 cut(s)	28, 509, 598, 827, 893
BccI	CCATC	3 cut(s)	77, 566, 1114
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	2 cut(s)	276, 607
BciVI	GTATCC	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	2 cut(s)	132, 1065
BfmI	CTRYAG	2 cut(s)	444, 813
BfuAI	ACCTGC	1 cut(s)	451
BfuI	GTATCC	1 cut(s)	399
BglII	AGATCT	1 cut(s)	915
BisI	GCNGC	5 cut(s)	42, 498, 612, 816, 882
BlsI	GCNGC	5 cut(s)	43, 499, 613, 817, 883
BmcAI	AGTACT	2 cut(s)	419, 516
Bme1390I	CCNGG	2 cut(s)	276, 607
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	137, 386
BmiI	GGNNCC	4 cut(s)	139, 250, 604, 1126
BmrFI	CCNGG	2 cut(s)	276, 607
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	2 cut(s)	162, 484
BmuI	ACTGGG	1 cut(s)	465
BpiI	GAAGAC	3 cut(s)	224, 560, 798
BpmI	CTGGAG	1 cut(s)	987
Bpu10I	CCTNAGC	2 cut(s)	196, 1049
Bpu14I	TTCGAA	1 cut(s)	990
BpuEI	CTTGAG	1 cut(s)	320
BsaJI	CCNNGG	8 cut(s)	252, 275, 396, 430, 606, 685, 748, 1009
BsaWI	WCCGGW	2 cut(s)	563, 1116
BsaXI	ACNNNNNCTCC	2 cut(s)	963, 993
Bse1I	ACTGG	3 cut(s)	388, 460, 508
Bse21I	CCTNAGG	1 cut(s)	1169
BseAI	TCCGGA	2 cut(s)	563, 1116
BseBI	CCWGG	2 cut(s)	276, 607
BseDI	CCNNGG	8 cut(s)	252, 275, 396, 430, 606, 685, 748, 1009
BseGI	GGATG	7 cut(s)	234, 272, 889, 916, 1005, 1030, 1125
BseMII	CTCAG	3 cut(s)	298, 1040, 1183
BseNI	ACTGG	3 cut(s)	388, 460, 508
BseRI	GAGGAG	2 cut(s)	525, 984
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	5 cut(s)	28, 509, 598, 827, 893
BsgI	GTGCAG	1 cut(s)	1019
Bsh1236I	CGCG	1 cut(s)	1149
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	564, 1117
BsmAI	GTCTC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	138
Bsp119I	TTCGAA	1 cut(s)	990
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp13I	TCCGGA	2 cut(s)	563, 1116
Bsp143I	GATC	6 cut(s)	271, 337, 469, 479, 602, 915
Bsp19I	CCATGG	3 cut(s)	396, 430, 748
BspACI	CCGC	3 cut(s)	224, 753, 908
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	3 cut(s)	297, 1041, 1182
BspEI	TCCGGA	2 cut(s)	563, 1116
BspFNI	CGCG	1 cut(s)	1149
BspHI	TCATGA	2 cut(s)	334, 625
BspLI	GGNNCC	4 cut(s)	139, 250, 604, 1126
BspMAI	CTGCAG	2 cut(s)	448, 817
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	4 cut(s)	266, 487, 597, 610
BspT104I	TTCGAA	1 cut(s)	990
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	388, 460, 508
BssECI	CCNNGG	8 cut(s)	252, 275, 396, 430, 606, 685, 748, 1009
BssMI	GATC	6 cut(s)	271, 337, 469, 479, 602, 915
BssT1I	CCWWGG	6 cut(s)	252, 396, 430, 685, 748, 1009
Bst2UI	CCWGG	2 cut(s)	276, 607
Bst4CI	ACNGT	5 cut(s)	51, 797, 979, 1109, 1165
Bst6I	CTCTTC	2 cut(s)	484, 502
BstBI	TTCGAA	1 cut(s)	990
BstDEI	CTNAG	4 cut(s)	196, 284, 1049, 1169
BstDSI	CCRYGG	3 cut(s)	396, 430, 748
BstF5I	GGATG	7 cut(s)	234, 272, 889, 916, 1005, 1030, 1125
BstFNI	CGCG	1 cut(s)	1149
BstKTI	GATC	6 cut(s)	274, 340, 472, 482, 605, 918
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	6 cut(s)	271, 337, 469, 479, 602, 915
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 530, 750
BstNI	CCWGG	2 cut(s)	276, 607
BstSCI	CCNGG	2 cut(s)	274, 605
BstSFI	CTRYAG	2 cut(s)	444, 813
BstSLI	GKGCMC	1 cut(s)	383
BstUI	CGCG	1 cut(s)	1149
BstV1I	GCAGC	5 cut(s)	28, 509, 598, 827, 893
BstV2I	GAAGAC	3 cut(s)	224, 560, 798
BstX2I	RGATCY	2 cut(s)	602, 915
BstYI	RGATCY	2 cut(s)	602, 915
Bsu36I	CCTNAGG	1 cut(s)	1169
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	3 cut(s)	396, 430, 748
BtsCI	GGATG	7 cut(s)	234, 272, 889, 916, 1005, 1030, 1125
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	7 cut(s)	354, 381, 453, 657, 670, 894, 975
BveI	ACCTGC	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	2 cut(s)	334, 625
Cfr13I	GGNCC	2 cut(s)	137, 386
Csp6I	GTAC	2 cut(s)	418, 515
CviQI	GTAC	2 cut(s)	418, 515
DdeI	CTNAG	4 cut(s)	196, 284, 1049, 1169
DpnI	GATC	6 cut(s)	273, 339, 471, 481, 604, 917
DpnII	GATC	6 cut(s)	271, 337, 469, 479, 602, 915
Eam1104I	CTCTTC	2 cut(s)	484, 502
EarI	CTCTTC	2 cut(s)	484, 502
Eco130I	CCWWGG	6 cut(s)	252, 396, 430, 685, 748, 1009
Eco32I	GATATC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	2 cut(s)	94, 810
Eco81I	CCTNAGG	1 cut(s)	1169
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	274, 605
EcoRV	GATATC	1 cut(s)	161
EcoT14I	CCWWGG	6 cut(s)	252, 396, 430, 685, 748, 1009
ErhI	CCWWGG	6 cut(s)	252, 396, 430, 685, 748, 1009
FauI	CCCGC	1 cut(s)	746
FauNDI	CATATG	2 cut(s)	100, 241
Fnu4HI	GCNGC	5 cut(s)	42, 498, 612, 816, 882
FokI	GGATG	7 cut(s)	221, 279, 876, 923, 992, 1037, 1132
Fsp4HI	GCNGC	5 cut(s)	42, 498, 612, 816, 882
FspBI	CTAG	2 cut(s)	132, 1065
GluI	GCNGC	5 cut(s)	42, 498, 612, 816, 882
GsuI	CTGGAG	1 cut(s)	987
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	2 cut(s)	564, 1117
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	7 cut(s)	62, 306, 331, 348, 758, 770, 972
HpaII	CCGG	2 cut(s)	564, 1117
HphI	GGTGA	5 cut(s)	155, 199, 301, 313, 432
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	4 cut(s)	113, 158, 295, 1139
Hpy188III	TCNNGA	6 cut(s)	335, 564, 626, 947, 966, 1117
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	139, 1138
HpyCH4III	ACNGT	5 cut(s)	51, 797, 979, 1109, 1165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 530, 750
HpyF3I	CTNAG	4 cut(s)	196, 284, 1049, 1169
Kpn2I	TCCGGA	2 cut(s)	563, 1116
Kzo9I	GATC	6 cut(s)	271, 337, 469, 479, 602, 915
LmnI	GCTCC	2 cut(s)	668, 1124
Lsp1109I	GCAGC	5 cut(s)	28, 509, 598, 827, 893
LweI	GCATC	2 cut(s)	162, 484
MaeI	CTAG	2 cut(s)	132, 1065
MaeIII	GTNAC	6 cut(s)	451, 656, 797, 973, 983, 1109
MalI	GATC	6 cut(s)	273, 339, 471, 481, 604, 917
MboI	GATC	6 cut(s)	271, 337, 469, 479, 602, 915
MboII	GAAGA	7 cut(s)	229, 501, 519, 565, 803, 935, 1040
MflI	RGATCY	2 cut(s)	602, 915
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	5 cut(s)	28, 114, 425, 780, 866
MlyI	GAGTC	4 cut(s)	56, 300, 767, 981
MroI	TCCGGA	2 cut(s)	563, 1116
MseI	TTAA	4 cut(s)	33, 738, 785, 1143
MslI	CAYNNNNRTG	3 cut(s)	126, 357, 1107
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	2 cut(s)	564, 1117
MspR9I	CCNGG	2 cut(s)	276, 607
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	2 cut(s)	276, 607
MvnI	CGCG	1 cut(s)	1149
MwoI	GCNNNNNNNGC	3 cut(s)	14, 530, 750
NcoI	CCATGG	3 cut(s)	396, 430, 748
NdeI	CATATG	2 cut(s)	100, 241
NdeII	GATC	6 cut(s)	271, 337, 469, 479, 602, 915
NlaIV	GGNNCC	4 cut(s)	139, 250, 604, 1126
NmuCI	GTSAC	5 cut(s)	451, 656, 797, 973, 1109
NspV	TTCGAA	1 cut(s)	990
OliI	CACNNNNGTG	1 cut(s)	1107
PagI	TCATGA	2 cut(s)	334, 625
PaqCI	CACCTGC	1 cut(s)	451
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	3 cut(s)	331, 348, 770
PflMI	CCANNNNNTGG	2 cut(s)	245, 402
PkrI	GCNGC	5 cut(s)	43, 499, 613, 817, 883
PleI	GAGTC	4 cut(s)	56, 300, 766, 980
PpsI	GAGTC	4 cut(s)	56, 300, 766, 980
Psp6I	CCWGG	2 cut(s)	274, 605
PspGI	CCWGG	2 cut(s)	274, 605
PspN4I	GGNNCC	4 cut(s)	139, 250, 604, 1126
PspPI	GGNCC	2 cut(s)	137, 386
PstI	CTGCAG	2 cut(s)	448, 817
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	602, 915
PvuII	CAGCTG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	419, 516
RsaNI	GTAC	2 cut(s)	418, 515
RseI	CAYNNNNRTG	3 cut(s)	126, 357, 1107
SaqAI	TTAA	4 cut(s)	33, 738, 785, 1143
SatI	GCNGC	5 cut(s)	42, 498, 612, 816, 882
Sau3AI	GATC	6 cut(s)	271, 337, 469, 479, 602, 915
Sau96I	GGNCC	2 cut(s)	137, 386
ScaI	AGTACT	2 cut(s)	419, 516
SchI	GAGTC	4 cut(s)	56, 300, 767, 981
ScrFI	CCNGG	2 cut(s)	276, 607
SduI	GDGCHC	1 cut(s)	383
SfaNI	GCATC	2 cut(s)	162, 484
SfcI	CTRYAG	2 cut(s)	444, 813
SfuI	TTCGAA	1 cut(s)	990
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	3 cut(s)	126, 357, 1107
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	5 cut(s)	28, 114, 425, 780, 866
SsiI	CCGC	3 cut(s)	224, 753, 908
SspMI	CTAG	2 cut(s)	132, 1065
StyD4I	CCNGG	2 cut(s)	274, 605
StyI	CCWWGG	6 cut(s)	252, 396, 430, 685, 748, 1009
TaaI	ACNGT	5 cut(s)	51, 797, 979, 1109, 1165
TaqI	TCGA	4 cut(s)	46, 65, 876, 990
TasI	AATT	5 cut(s)	28, 114, 425, 780, 866
TatI	WGTACW	2 cut(s)	417, 514
TfiI	GAWTC	3 cut(s)	331, 348, 770
Tru1I	TTAA	4 cut(s)	33, 738, 785, 1143
Tru9I	TTAA	4 cut(s)	33, 738, 785, 1143
TscAI	CASTG	7 cut(s)	361, 388, 460, 657, 670, 901, 982
TseFI	GTSAC	5 cut(s)	451, 656, 797, 973, 1109
TseI	GCWGC	5 cut(s)	41, 497, 611, 815, 881
Tsp45I	GTSAC	5 cut(s)	451, 656, 797, 973, 1109
TspDTI	ATGAA	6 cut(s)	17, 87, 158, 323, 614, 1041
TspRI	CASTG	7 cut(s)	361, 388, 460, 657, 670, 901, 982
Van91I	CCANNNNNTGG	2 cut(s)	245, 402
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	4 cut(s)	28, 114, 425, 866
XspI	CTAG	2 cut(s)	132, 1065
ZrmI	AGTACT	2 cut(s)	419, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.