pycom12g00300

Belongs to the Glu Leu Phe Val dehydrogenases family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
349642 .. 351792
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g00300.9

Sequence Viewer

Length: 1236 bp
ATGAATGCATTAGTGGCAACGAACAGAAACTTCAAGTTGGCTGCTCGGCTTTTGGGATTGGACTCCAAGCTTGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGTTGAGTGTACCATACCGAAAGACGATGGCAGTTTGGCTTCATTTGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGAATCAGATATCACCCAGAGGTCGATCCAGATGAGGTGAATGCTTTAGCACAGCTGATGACATGGAAGACGGCAGTAGCCAACATCCCATATGGGGGTGCCAAAGGGGGTATAGGATGTAATCCAGGGGAGTTGAGTCTTTCCGAACTAGAGCGACTCACCAGAGTCTTCACACAAAAGATACACGATCTTATCGGAATCCACACCGATGTTCCAGCACCAGATATGGGGACAGGTCCACAGACCATGGCATGGATACTAGACGAGTACTCAAAGTTTCATGGCTACTCACCTGCAGTAGTGACTGGAAAACCTATTGACCTTGGTCGATCACTAGGAAGAGATGCAGCAACCGGAAGAGGAGTACTTTTTGCGACTGAGGCCTTACTCAATGAGCATGGAAAGAGCATCTCCGGACAACGGTTTGTCATACAGGGTTTCGGGAACGTAGGCTCATGGGCTGCCCAGCTAATCCATGAGAGTGGTGGCAAAATAGTTGCAGTGAGTGACATCACTGGAGCCCTAAAGAACAGCAAAGGAATTGACATTCCAAGCCTGGTCAAGCATGTCAAGGACAACAGGGGAGTCAAGGGGTTCCATGGTGGGGATCCAATAGAACCCTGCTCAATCTTGGTTGAAGACTGTGACATTCTCATTCCAGCAGCCCTCGGAGGTGTCATCAACAAGGAAAATGCAAATGACATAAGGGCTAAGTTTATAATCGAAGCGGCTAATCATCCCACTGACCCTGAGGCTGATGAGATCCTGTCAAAGAAGGGTGTTGTAATTCTTCCTGATATATATGCAAACTCAGGAGGAGTTACTGTTAGTTACTTTGAGTGGGTGCAGAACATTCAAGGATTCTTGTGGGATGAAGAGAAGGTGAACAATGAGCTCAAGACATACATGACCAAAGGCTTCAAAGGTGTGAAGGAGATGTGCAAAACCCATAACTGCGACCTCCGGATGGGAGCCTTCACGCTCGGAGTTAACCGCGTTGCAAGGGCGACTGTCCTGAGAGGGTGGGAGGCCTGA

Protein Analysis

412

Amino Acids

44.49

Weight (kDa)

6.61

Isoelectric Point (pI)

23.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 920
AarI CACCTGC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 453
AccII CGCG 1 cut(s) 1197
AccIII TCCGGA 2 cut(s) 614, 1164
AciI CCGC 2 cut(s) 929, 1195
AclWI GGATC 4 cut(s) 221, 803, 816, 958
AcuI CTGAAG 1 cut(s) 145
AfaI GTAC 3 cut(s) 118, 470, 567
AfiI CCNNNNNNNGG 9 cut(s) 196, 197, 295, 296, 428, 453, 621, 805, 1168
AgsI TTSAA 5 cut(s) 34, 170, 839, 1058, 1123
AjnI CCWGG 2 cut(s) 325, 756
AluBI AGCT 4 cut(s) 70, 256, 670, 1096
AluI AGCT 4 cut(s) 70, 256, 670, 1096
Alw21I GWGCWC 1 cut(s) 1098
AlwI GGATC 4 cut(s) 221, 803, 816, 958
Aor13HI TCCGGA 2 cut(s) 614, 1164
AoxI GGCC 3 cut(s) 187, 582, 1230
ApeKI GCWGC 4 cut(s) 41, 548, 662, 863
AspS9I GGNCC 2 cut(s) 188, 437
AsuHPI GGTGA 5 cut(s) 206, 250, 352, 483, 1096
AvaII GGWCC 1 cut(s) 437
AxyI CCTNAGG 1 cut(s) 951
BamHI GGATCC 1 cut(s) 808
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 724, 1098
BbsI GAAGAC 3 cut(s) 275, 361, 846
Bbv12I GWGCWC 1 cut(s) 1098
BbvI GCAGC 4 cut(s) 28, 560, 649, 875
BccI CCATC 2 cut(s) 128, 1162
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 2 cut(s) 327, 758
BciVI GTATCC 1 cut(s) 450
BfaI CTAG 4 cut(s) 183, 350, 461, 536
BfmI CTRYAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 502
BfuI GTATCC 1 cut(s) 450
BisI GCNGC 5 cut(s) 42, 549, 663, 864, 930
BlsI GCNGC 5 cut(s) 43, 550, 664, 865, 931
BmcAI AGTACT 2 cut(s) 470, 567
Bme1390I CCNGG 2 cut(s) 327, 758
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 188, 437
BmiI GGNNCC 6 cut(s) 190, 301, 721, 797, 810, 1174
BmrFI CCNGG 2 cut(s) 327, 758
BmsI GCATC 2 cut(s) 535, 618
BoxI GACNNNNGTC 1 cut(s) 525
BpiI GAAGAC 3 cut(s) 275, 361, 846
BpmI CTGGAG 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 92, 1082
BsaJI CCNNGG 5 cut(s) 326, 447, 523, 799, 868
BsaWI WCCGGW 3 cut(s) 554, 614, 1164
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 9 cut(s) 196, 197, 295, 296, 428, 453, 621, 805, 1168
Bse1I ACTGG 2 cut(s) 511, 721
Bse21I CCTNAGG 1 cut(s) 951
BseAI TCCGGA 2 cut(s) 614, 1164
BseBI CCWGG 2 cut(s) 327, 758
BseDI CCNNGG 5 cut(s) 326, 447, 523, 799, 868
BseGI GGATG 5 cut(s) 285, 323, 937, 1078, 1173
BseLI CCNNNNNNNGG 9 cut(s) 196, 197, 295, 296, 428, 453, 621, 805, 1168
BseMII CTCAG 4 cut(s) 570, 942, 1026, 1208
BseNI ACTGG 2 cut(s) 511, 721
BseRI GAGGAG 2 cut(s) 576, 1032
BseXI GCAGC 4 cut(s) 28, 560, 649, 875
BseYI CCCAGC 1 cut(s) 666
BsgI GTGCAG 1 cut(s) 1067
Bsh1236I CGCG 1 cut(s) 1197
BshFI GGCC 3 cut(s) 189, 584, 1232
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 1098
BsiSI CCGG 3 cut(s) 555, 615, 1165
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 9 cut(s) 196, 197, 295, 296, 428, 453, 621, 805, 1168
BsmFI GGGAC 1 cut(s) 445
BsmI GAATGC 2 cut(s) 10, 247
BsnI GGCC 3 cut(s) 189, 584, 1232
Bsp1286I GDGCHC 2 cut(s) 724, 1098
Bsp13I TCCGGA 2 cut(s) 614, 1164
Bsp143I GATC 5 cut(s) 226, 388, 530, 808, 963
Bsp19I CCATGG 2 cut(s) 447, 799
BspACI CCGC 2 cut(s) 929, 1195
BspANI GGCC 3 cut(s) 189, 584, 1232
BspCNI CTCAG 4 cut(s) 571, 943, 1025, 1209
BspEI TCCGGA 2 cut(s) 614, 1164
BspFNI CGCG 1 cut(s) 1197
BspLI GGNNCC 6 cut(s) 190, 301, 721, 797, 810, 1174
BspMAI CTGCAG 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 4 cut(s) 221, 803, 816, 958
BspT107I GGYRCC 1 cut(s) 299
BsrI ACTGG 2 cut(s) 511, 721
BssECI CCNNGG 5 cut(s) 326, 447, 523, 799, 868
BssMI GATC 5 cut(s) 226, 388, 530, 808, 963
BssT1I CCWWGG 3 cut(s) 447, 523, 799
Bst2UI CCWGG 2 cut(s) 327, 758
Bst4CI ACNGT 4 cut(s) 624, 845, 1027, 1213
Bst6I CTCTTC 3 cut(s) 535, 553, 1071
BstDEI CTNAG 5 cut(s) 579, 912, 951, 1012, 1217
BstDSI CCRYGG 2 cut(s) 447, 799
BstF5I GGATG 5 cut(s) 285, 323, 937, 1078, 1173
BstFNI CGCG 1 cut(s) 1197
BstKTI GATC 5 cut(s) 229, 391, 533, 811, 966
BstMBI GATC 5 cut(s) 226, 388, 530, 808, 963
BstMWI GCNNNNNNNGC 2 cut(s) 14, 581
BstNI CCWGG 2 cut(s) 327, 758
BstNSI RCATGY 1 cut(s) 770
BstPAI GACNNNNGTC 1 cut(s) 525
BstSCI CCNGG 2 cut(s) 325, 756
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 1 cut(s) 1197
BstV1I GCAGC 4 cut(s) 28, 560, 649, 875
BstV2I GAAGAC 3 cut(s) 275, 361, 846
BstX2I RGATCY 2 cut(s) 808, 963
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 2 cut(s) 808, 963
Bsu36I CCTNAGG 1 cut(s) 951
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 3 cut(s) 189, 584, 1232
BtgI CCRYGG 2 cut(s) 447, 799
BtsCI GGATG 5 cut(s) 285, 323, 937, 1078, 1173
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 3 cut(s) 708, 714, 942
BveI ACCTGC 1 cut(s) 502
Cfr13I GGNCC 2 cut(s) 188, 437
Csp6I GTAC 3 cut(s) 117, 469, 566
CviQI GTAC 3 cut(s) 117, 469, 566
DdeI CTNAG 5 cut(s) 579, 912, 951, 1012, 1217
DpnI GATC 5 cut(s) 228, 390, 532, 810, 965
DpnII GATC 5 cut(s) 226, 388, 530, 808, 963
Eam1104I CTCTTC 3 cut(s) 535, 553, 1071
EarI CTCTTC 3 cut(s) 535, 553, 1071
Ecl136II GAGCTC 1 cut(s) 1096
Eco130I CCWWGG 3 cut(s) 447, 523, 799
Eco147I AGGCCT 2 cut(s) 584, 1232
Eco24I GRGCYC 2 cut(s) 724, 1098
Eco32I GATATC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 1096
Eco57I CTGAAG 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 951
EcoICRI GAGCTC 1 cut(s) 1096
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 325, 756
EcoRV GATATC 1 cut(s) 212
EcoT14I CCWWGG 3 cut(s) 447, 523, 799
EcoT22I ATGCAT 1 cut(s) 10
EcoT38I GRGCYC 2 cut(s) 724, 1098
ErhI CCWWGG 3 cut(s) 447, 523, 799
FaqI GGGAC 1 cut(s) 445
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 5 cut(s) 42, 549, 663, 864, 930
FokI GGATG 5 cut(s) 272, 330, 924, 1085, 1180
FriOI GRGCYC 2 cut(s) 724, 1098
Fsp4HI GCNGC 5 cut(s) 42, 549, 663, 864, 930
FspBI CTAG 4 cut(s) 183, 350, 461, 536
GluI GCNGC 5 cut(s) 42, 549, 663, 864, 930
GsaI CCCAGC 1 cut(s) 670
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 3 cut(s) 189, 584, 1232
HapII CCGG 3 cut(s) 555, 615, 1165
HincII GTYRAC 1 cut(s) 1192
HindII GTYRAC 1 cut(s) 1192
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 8 cut(s) 62, 204, 337, 357, 366, 399, 786, 1062
HpaI GTTAAC 1 cut(s) 1192
HpaII CCGG 3 cut(s) 555, 615, 1165
HphI GGTGA 5 cut(s) 206, 250, 352, 483, 1096
Hpy166II GTNNAC 5 cut(s) 83, 117, 440, 1087, 1192
Hpy188I TCNGA 5 cut(s) 209, 346, 398, 872, 1187
Hpy188III TCNNGA 8 cut(s) 230, 615, 643, 995, 1014, 1099, 1165, 1216
Hpy8I GTNNAC 5 cut(s) 83, 117, 440, 1087, 1192
HpyAV CCTTC 5 cut(s) 190, 970, 1075, 1126, 1186
HpyCH4III ACNGT 4 cut(s) 624, 845, 1027, 1213
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 9 cut(s) 8, 497, 548, 701, 896, 1007, 1048, 1143, 1202
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 581
HpyF3I CTNAG 5 cut(s) 579, 912, 951, 1012, 1217
HpySE526I ACGT 1 cut(s) 648
Kpn2I TCCGGA 2 cut(s) 614, 1164
KspAI GTTAAC 1 cut(s) 1192
Kzo9I GATC 5 cut(s) 226, 388, 530, 808, 963
LmnI GCTCC 2 cut(s) 719, 1172
Lsp1109I GCAGC 4 cut(s) 28, 560, 649, 875
LweI GCATC 2 cut(s) 535, 618
MaeI CTAG 4 cut(s) 183, 350, 461, 536
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 5 cut(s) 502, 707, 845, 1021, 1031
MalI GATC 5 cut(s) 228, 390, 532, 810, 965
MboI GATC 5 cut(s) 226, 388, 530, 808, 963
MboII GAAGA 7 cut(s) 280, 361, 552, 570, 851, 983, 1088
MflI RGATCY 2 cut(s) 808, 963
MhlI GDGCHC 2 cut(s) 724, 1098
MluCI AATT 2 cut(s) 741, 987
MlyI GAGTC 5 cut(s) 56, 346, 351, 375, 795
Mph1103I ATGCAT 1 cut(s) 10
MroI TCCGGA 2 cut(s) 614, 1164
MseI TTAA 1 cut(s) 1191
MslI CAYNNNNRTG 3 cut(s) 177, 408, 681
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 3 cut(s) 555, 615, 1165
MspR9I CCNGG 2 cut(s) 327, 758
Mva1269I GAATGC 2 cut(s) 10, 247
MvaI CCWGG 2 cut(s) 327, 758
MvnI CGCG 1 cut(s) 1197
MwoI GCNNNNNNNGC 2 cut(s) 14, 581
NcoI CCATGG 2 cut(s) 447, 799
NdeI CATATG 1 cut(s) 292
NdeII GATC 5 cut(s) 226, 388, 530, 808, 963
NlaIV GGNNCC 6 cut(s) 190, 301, 721, 797, 810, 1174
NmeAIII GCCGAG 1 cut(s) 25
NmuCI GTSAC 3 cut(s) 502, 707, 845
NsiI ATGCAT 1 cut(s) 10
NspI RCATGY 1 cut(s) 770
PaqCI CACCTGC 1 cut(s) 502
PceI AGGCCT 2 cut(s) 584, 1232
PctI GAATGC 2 cut(s) 10, 247
PfeI GAWTC 3 cut(s) 204, 399, 1062
PflMI CCANNNNNTGG 1 cut(s) 453
PkrI GCNGC 5 cut(s) 43, 550, 664, 865, 931
PleI GAGTC 5 cut(s) 56, 345, 351, 374, 794
PpsI GAGTC 5 cut(s) 56, 345, 351, 374, 794
PshAI GACNNNNGTC 1 cut(s) 525
PsiI TTATAA 1 cut(s) 920
Psp124BI GAGCTC 1 cut(s) 1098
Psp6I CCWGG 2 cut(s) 325, 756
PspFI CCCAGC 1 cut(s) 666
PspGI CCWGG 2 cut(s) 325, 756
PspN4I GGNNCC 6 cut(s) 190, 301, 721, 797, 810, 1174
PspPI GGNCC 2 cut(s) 188, 437
PstI CTGCAG 1 cut(s) 499
PsuI RGATCY 2 cut(s) 808, 963
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 3 cut(s) 118, 470, 567
RsaNI GTAC 3 cut(s) 117, 469, 566
RseI CAYNNNNRTG 3 cut(s) 177, 408, 681
SacI GAGCTC 1 cut(s) 1098
SaqAI TTAA 1 cut(s) 1191
SatI GCNGC 5 cut(s) 42, 549, 663, 864, 930
Sau3AI GATC 5 cut(s) 226, 388, 530, 808, 963
Sau96I GGNCC 2 cut(s) 188, 437
ScaI AGTACT 2 cut(s) 470, 567
SchI GAGTC 5 cut(s) 56, 346, 351, 375, 795
ScrFI CCNGG 2 cut(s) 327, 758
SduI GDGCHC 2 cut(s) 724, 1098
SfaNI GCATC 2 cut(s) 535, 618
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 3 cut(s) 177, 408, 681
SmlI CTYRAG 2 cut(s) 71, 1097
SmoI CTYRAG 2 cut(s) 71, 1097
Sse9I AATT 2 cut(s) 741, 987
SseBI AGGCCT 2 cut(s) 584, 1232
SsiI CCGC 2 cut(s) 929, 1195
SspMI CTAG 4 cut(s) 183, 350, 461, 536
SstI GAGCTC 1 cut(s) 1098
StuI AGGCCT 2 cut(s) 584, 1232
StyD4I CCNGG 2 cut(s) 325, 756
StyI CCWWGG 3 cut(s) 447, 523, 799
TaaI ACNGT 4 cut(s) 624, 845, 1027, 1213
TaiI ACGT 1 cut(s) 651
TaqI TCGA 3 cut(s) 225, 529, 924
TasI AATT 2 cut(s) 741, 987
TatI WGTACW 2 cut(s) 468, 565
TauI GCSGC 1 cut(s) 932
TfiI GAWTC 3 cut(s) 204, 399, 1062
Tru1I TTAA 1 cut(s) 1191
Tru9I TTAA 1 cut(s) 1191
TscAI CASTG 3 cut(s) 708, 721, 949
TseFI GTSAC 3 cut(s) 502, 707, 845
TseI GCWGC 4 cut(s) 41, 548, 662, 863
Tsp45I GTSAC 3 cut(s) 502, 707, 845
TspDTI ATGAA 5 cut(s) 17, 138, 209, 470, 1089
TspRI CASTG 3 cut(s) 708, 721, 949
Van91I CCANNNNNTGG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 437
XceI RCATGY 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XspI CTAG 4 cut(s) 183, 350, 461, 536
ZrmI AGTACT 2 cut(s) 470, 567
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.