Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003303

Physical Location & Seq

Genomic Coordinates Reverse (-)

29405050 .. 29405385

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0289700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCAGTGCGGCTCAGGAGGGGTGCCCTGCATTTTGGGTGTCCAAAGTTGGGTTGGAGCGAGGGTGCCCAAGTGCCTAGGTGCCCACAGCAGATCTATTTGGGCCTGTATCTGTGTCAAGCCTGCTTGGTCATATCTCATTGCTTCAGGCCGGATTTGGATCCGGATTTGGGATCCAGGAAACACTCAAATCCTGATCATAGATCCGAGACAGTTGCTCTTTTTGATTTGGTATTGCTTCTGGTTCTTAGGAGTTCGTTTGCTAATTTTCGAGTTTTTGACACCTTCGGTTACTTTCGAACTCCTGGTGAGCGAATCACCTCTCCTAGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

111

Amino Acids

12.69

Weight (kDa)

9.26

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03910 AT3G03910 AT5G18170
fragaria_vesca	FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120
malus_domestica	MD12G1003600.v1.1 MD14G1002500.v1.1
prunus_persica	Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1
pyrus_communis	pycom12g00300 pycom14g00020
rosa_chinensis	RchiOBHm_Chr3g0497101
rosa_laevigata	RLG00000022481
rosa_multiflora	Rmu_ssc0000003.1_g000006
rosa_roxburghii	Rroxscaffold_6G00388400
rosa_rugosa	Rorug03G0289600 Rorug03G0289700 Rorug03G0289800 Rorug03G0289900 Rorug03G0290000 Rorug03G0290100 Rorug03G0290100 Rorug03G0290200
rosa_samantha	Rh3AG334100 Rh3BG371200 Rh3CG368200 Rh3DG369200
rosa_wichuraiana	Rw3G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	23, 65, 81
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	5 cut(s)	155, 168, 168, 181, 198
AcuI	CTGAAG	1 cut(s)	130
AfiI	CCNNNNNNNGG	3 cut(s)	50, 170, 327
AjnI	CCWGG	2 cut(s)	176, 304
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	5 cut(s)	155, 168, 168, 181, 198
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	2 cut(s)	103, 149
AspA2I	CCTAGG	2 cut(s)	77, 326
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	310, 320
AsuII	TTCGAA	1 cut(s)	298
AvrII	CCTAGG	2 cut(s)	77, 326
BaeGI	GKGCMC	3 cut(s)	28, 70, 86
BamHI	GGATCC	2 cut(s)	160, 173
BanI	GGYRCC	3 cut(s)	23, 65, 81
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	2 cut(s)	178, 306
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	78, 327
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	1 cut(s)	11
BlnI	CCTAGG	2 cut(s)	77, 326
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	178, 306
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	5 cut(s)	25, 67, 83, 162, 175
BmrFI	CCNGG	2 cut(s)	178, 306
Bpu10I	CCTNAGC	1 cut(s)	14
Bpu14I	TTCGAA	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	77, 326
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 170, 327
Bse3DI	GCAATG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	2 cut(s)	178, 306
BseDI	CCNNGG	2 cut(s)	77, 326
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	50, 170, 327
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	28
BseSI	GKGCMC	3 cut(s)	28, 70, 86
BshFI	GGCC	2 cut(s)	105, 151
BshNI	GGYRCC	3 cut(s)	23, 65, 81
BsiSI	CCGG	2 cut(s)	152, 164
BslI	CCNNNNNNNGG	3 cut(s)	50, 170, 327
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	105, 151
Bsp119I	TTCGAA	1 cut(s)	298
Bsp1286I	GDGCHC	3 cut(s)	28, 70, 86
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	5 cut(s)	93, 160, 173, 196, 203
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	105, 151
BspCNI	CTCAG	1 cut(s)	27
BspEI	TCCGGA	1 cut(s)	163
BspLI	GGNNCC	5 cut(s)	25, 67, 83, 162, 175
BspPI	GGATC	5 cut(s)	155, 168, 168, 181, 198
BspT104I	TTCGAA	1 cut(s)	298
BspT107I	GGYRCC	3 cut(s)	23, 65, 81
BsrDI	GCAATG	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	77, 326
BssMI	GATC	5 cut(s)	93, 160, 173, 196, 203
BssT1I	CCWWGG	2 cut(s)	77, 326
Bst2UI	CCWGG	2 cut(s)	178, 306
Bst4CI	ACNGT	1 cut(s)	214
BstBI	TTCGAA	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	14, 248
BstENI	CCTNNNNNAGG	1 cut(s)	325
BstKTI	GATC	5 cut(s)	96, 163, 176, 199, 206
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	5 cut(s)	93, 160, 173, 196, 203
BstNI	CCWGG	2 cut(s)	178, 306
BstSCI	CCNGG	2 cut(s)	176, 304
BstSLI	GKGCMC	3 cut(s)	28, 70, 86
BstX2I	RGATCY	4 cut(s)	93, 160, 173, 203
BstYI	RGATCY	4 cut(s)	93, 160, 173, 203
BsuRI	GGCC	2 cut(s)	105, 151
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	103
CviJI	RGCY	4 cut(s)	13, 105, 122, 151
CviKI_1	RGCY	4 cut(s)	13, 105, 122, 151
DdeI	CTNAG	2 cut(s)	14, 248
DpnI	GATC	5 cut(s)	95, 162, 175, 198, 205
DpnII	GATC	5 cut(s)	93, 160, 173, 196, 203
Eco130I	CCWWGG	2 cut(s)	77, 326
Eco57I	CTGAAG	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	176, 304
EcoT14I	CCWWGG	2 cut(s)	77, 326
ErhI	CCWWGG	2 cut(s)	77, 326
FaiI	YATR	2 cut(s)	134, 201
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	2 cut(s)	78, 327
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	105, 151
HapII	CCGG	2 cut(s)	152, 164
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	2 cut(s)	152, 164
HphI	GGTGA	2 cut(s)	310, 320
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	3 cut(s)	16, 164, 194
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	14, 248
Kpn2I	TCCGGA	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	5 cut(s)	93, 160, 173, 196, 203
LmnI	GCTCC	1 cut(s)	57
MaeI	CTAG	2 cut(s)	78, 327
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	95, 162, 175, 198, 205
MboI	GATC	5 cut(s)	93, 160, 173, 196, 203
MflI	RGATCY	4 cut(s)	93, 160, 173, 203
MhlI	GDGCHC	3 cut(s)	28, 70, 86
MluCI	AATT	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	12, 55, 331
MroI	TCCGGA	1 cut(s)	163
MspI	CCGG	2 cut(s)	152, 164
MspR9I	CCNGG	2 cut(s)	178, 306
MvaI	CCWGG	2 cut(s)	178, 306
NdeII	GATC	5 cut(s)	93, 160, 173, 196, 203
NlaIV	GGNNCC	5 cut(s)	25, 67, 83, 162, 175
NspV	TTCGAA	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	315
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	176, 304
PspGI	CCWGG	2 cut(s)	176, 304
PspN4I	GGNNCC	5 cut(s)	25, 67, 83, 162, 175
PspPI	GGNCC	1 cut(s)	103
PsuI	RGATCY	4 cut(s)	93, 160, 173, 203
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	5 cut(s)	93, 160, 173, 196, 203
Sau96I	GGNCC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	178, 306
SduI	GDGCHC	3 cut(s)	28, 70, 86
SetI	ASST	4 cut(s)	83, 287, 323, 332
SfuI	TTCGAA	1 cut(s)	298
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	2 cut(s)	78, 327
StyD4I	CCNGG	2 cut(s)	176, 304
StyI	CCWWGG	2 cut(s)	77, 326
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	271, 298
TasI	AATT	1 cut(s)	265
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	315
TscAI	CASTG	1 cut(s)	12
TspRI	CASTG	1 cut(s)	12
XagI	CCTNNNNNAGG	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XmaJI	CCTAGG	2 cut(s)	77, 326
XspI	CTAG	2 cut(s)	78, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.