Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003303

Physical Location & Seq

Genomic Coordinates Reverse (-)

438122 .. 443673

Gene Structure 5552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G004100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAACGCATTGGTGGCAACCAACAGAAACTTCAAGTTGGCAGCTCGGCTTTTGGGATTGGACTCCAAGCTTGAGAGAAGTTTACTAATACCATTTAGGGAAATCAAGGTTGAGTGCACCATACCAAAAGATGATGGGAGTTTGGCTTCATTTGTTGGGTTCAGAGTTCAACATGACAATGCCAGAGGCCCCATGAAGGGAGGAATTAGATATCACCCAGAGGTCGACCCAGATGAGGTGAATGCTCTAGCACAGCTAATGACGTGGAAGACGGCGGTGGCTAACATCCCATACGGTGGTGCCAAAGGTGGGATAGGATGCGATCCAGGGGAGTTGAGTGTTTCAGAACTAGAACGGCTCACCAGAGTTTTCACCCAAAAGATACATGATCTTATAGGCATCCATACTGATGTTCCAGCACCAGATATGGGGACGGGTCCACAGACCATGGCATGGATCCTAGATGAGTACTCAAAATTTCATGGCTACTCACCTGCCGTAGTGACTGGAAAACCTATTGATCTTGGTGGATCTCTGGGAAGAGATGCAGCAACAGGAAGAGGAGTGCTTTTCGCAACAGAGGCTTTACTCAATGAGCATGGAAAGAGCATCTCTGGACAACGGTTCGTTATCCAGGGTTTTGGGAATGTGGGCTCCTGGGCTGCCCAACTCATCCATGAGAGTGGTGGCAAAATAGTTGCAGTGTGTGATATCAGTGGAGCCATAAAGAACAGCAAAGGACTAGACATTCCAAGCCTACTTAACCATGTGAAGGAGAAGAGGGGTGTCAAGGGGTTCAATGGTGGGGACCCAATAGATCCCACCTCAATATTGGTTGAAGACTGTGACATCCTCATTCCAGCAGCCCTGGGAGGTGTCATCAACAGGGAAAATGCAAATGACATAAAAGCCAAGTTTATCATTGAAGCAGCTAATCACCCCACTGACCCCGAGGCCGATGAGATCTTATCAAAGAAAGGTGTTGTAATTCTTCCCGATATATATGCAAACTCTGGAGGAGTTACTGTTAGTTACTTTGAGTGGGTACAGAACATCCAAGGTTTCTTGTGGGATGAAGAAAAGGTGAACAATGAGCTGAGGACTTACATGACCAAAGGCTTCAAAGATGTGAAGGAGATGTGCAAAACCCACAACTGTGACCTCCGGATGGGAGCCTTCACGCTTGGGGTTAACCGCGTTGCAAGGGCAACTGTCCTCCGAGGGTGGGAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

412

Amino Acids

44.49

Weight (kDa)

6.09

Isoelectric Point (pI)

24.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03910 AT3G03910 AT5G18170
fragaria_vesca	FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120
malus_domestica	MD12G1003600.v1.1 MD14G1002500.v1.1
prunus_persica	Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1
pyrus_communis	pycom12g00300 pycom14g00020
rosa_chinensis	RchiOBHm_Chr3g0497101
rosa_laevigata	RLG00000022481
rosa_multiflora	Rmu_ssc0000003.1_g000006
rosa_roxburghii	Rroxscaffold_6G00388400
rosa_rugosa	Rorug03G0289600 Rorug03G0289700 Rorug03G0289800 Rorug03G0289900 Rorug03G0290000 Rorug03G0290100 Rorug03G0290100 Rorug03G0290200
rosa_samantha	Rh3AG334100 Rh3BG371200 Rh3CG368200 Rh3DG369200
rosa_wichuraiana	Rw3G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	502
Acc36I	ACCTGC	1 cut(s)	502
AccB1I	GGYRCC	1 cut(s)	299
AccB7I	CCANNNNNTGG	2 cut(s)	296, 453
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	1197
AccIII	TCCGGA	1 cut(s)	1164
AciI	CCGC	2 cut(s)	275, 1195
AclWI	GGATC	5 cut(s)	317, 451, 464, 538, 812
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	2 cut(s)	470, 1047
AgsI	TTSAA	6 cut(s)	34, 170, 799, 839, 926, 1123
AjiI	CACGTC	1 cut(s)	264
AjnI	CCWGG	4 cut(s)	325, 633, 656, 867
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AleI	CACNNNNGTG	1 cut(s)	1155
AluBI	AGCT	5 cut(s)	44, 70, 256, 932, 1096
AluI	AGCT	5 cut(s)	44, 70, 256, 932, 1096
Alw21I	GWGCWC	1 cut(s)	119
Alw44I	GTGCAC	1 cut(s)	115
AlwI	GGATC	5 cut(s)	317, 451, 464, 538, 812
Ama87I	CYCGRG	1 cut(s)	950
Aor13HI	TCCGGA	1 cut(s)	1164
AoxI	GGCC	2 cut(s)	187, 954
ApaLI	GTGCAC	1 cut(s)	115
ApeKI	GCWGC	5 cut(s)	41, 548, 662, 863, 929
ApoI	RAATTY	1 cut(s)	476
AspS9I	GGNCC	3 cut(s)	188, 437, 808
AsuHPI	GGTGA	7 cut(s)	206, 250, 352, 364, 483, 929, 1096
AvaI	CYCGRG	1 cut(s)	950
AvaII	GGWCC	2 cut(s)	437, 808
BaeGI	GKGCMC	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	656
BbsI	GAAGAC	2 cut(s)	275, 846
Bbv12I	GWGCWC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	1097
BbvI	GCAGC	5 cut(s)	53, 560, 649, 875, 941
BccI	CCATC	2 cut(s)	128, 1162
BceAI	ACGGC	3 cut(s)	288, 371, 482
BcgI	CGANNNNNNTGC	2 cut(s)	986, 1020
BciT130I	CCWGG	4 cut(s)	327, 635, 658, 869
BfaI	CTAG	4 cut(s)	248, 350, 461, 743
BfuAI	ACCTGC	1 cut(s)	502
BglII	AGATCT	1 cut(s)	963
BisI	GCNGC	5 cut(s)	42, 549, 663, 864, 930
BlsI	GCNGC	5 cut(s)	43, 550, 664, 865, 931
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	4 cut(s)	327, 635, 658, 869
Bme18I	GGWCC	2 cut(s)	437, 808
BmeT110I	CYCGRG	1 cut(s)	950
BmgBI	CACGTC	1 cut(s)	264
BmgT120I	GGNCC	3 cut(s)	188, 437, 808
BmiI	GGNNCC	9 cut(s)	190, 301, 438, 458, 655, 721, 809, 810, 1174
BmrFI	CCNGG	4 cut(s)	327, 635, 658, 869
BmsI	GCATC	4 cut(s)	308, 408, 535, 618
BpiI	GAAGAC	2 cut(s)	275, 846
BpmI	CTGGAG	1 cut(s)	1035
Bpu10I	CCTNAGC	1 cut(s)	1097
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	9 cut(s)	326, 447, 634, 657, 867, 868, 951, 1057, 1219
BsaWI	WCCGGW	1 cut(s)	1164
BsaXI	ACNNNNNCTCC	2 cut(s)	1011, 1041
Bse1I	ACTGG	1 cut(s)	511
BseAI	TCCGGA	1 cut(s)	1164
BseBI	CCWGG	4 cut(s)	327, 635, 658, 869
BseDI	CCNNGG	9 cut(s)	326, 447, 634, 657, 867, 868, 951, 1057, 1219
BseGI	GGATG	8 cut(s)	285, 323, 399, 672, 849, 1053, 1078, 1173
BseMII	CTCAG	1 cut(s)	1088
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	2 cut(s)	576, 1032
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	5 cut(s)	53, 560, 649, 875, 941
Bsh1236I	CGCG	1 cut(s)	1197
BshFI	GGCC	2 cut(s)	189, 956
BshNI	GGYRCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	950
BsiSI	CCGG	1 cut(s)	1165
BslFI	GGGAC	2 cut(s)	445, 821
BsmFI	GGGAC	2 cut(s)	445, 821
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	189, 956
BsoBI	CYCGRG	1 cut(s)	950
Bsp1286I	GDGCHC	2 cut(s)	119, 656
Bsp13I	TCCGGA	1 cut(s)	1164
Bsp143I	GATC	7 cut(s)	322, 388, 456, 520, 530, 817, 963
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	2 cut(s)	275, 1195
BspANI	GGCC	2 cut(s)	189, 956
BspCNI	CTCAG	1 cut(s)	1089
BspEI	TCCGGA	1 cut(s)	1164
BspFNI	CGCG	1 cut(s)	1197
BspLI	GGNNCC	9 cut(s)	190, 301, 438, 458, 655, 721, 809, 810, 1174
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	5 cut(s)	317, 451, 464, 538, 812
BspT107I	GGYRCC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	9 cut(s)	326, 447, 634, 657, 867, 868, 951, 1057, 1219
BssMI	GATC	7 cut(s)	322, 388, 456, 520, 530, 817, 963
BssT1I	CCWWGG	2 cut(s)	447, 1057
Bst2UI	CCWGG	4 cut(s)	327, 635, 658, 869
Bst4CI	ACNGT	6 cut(s)	296, 624, 845, 1027, 1157, 1213
Bst6I	CTCTTC	3 cut(s)	535, 553, 773
BstDEI	CTNAG	1 cut(s)	1097
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	8 cut(s)	285, 323, 399, 672, 849, 1053, 1078, 1173
BstFNI	CGCG	1 cut(s)	1197
BstKTI	GATC	7 cut(s)	325, 391, 459, 523, 533, 820, 966
BstMBI	GATC	7 cut(s)	322, 388, 456, 520, 530, 817, 963
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 581
BstNI	CCWGG	4 cut(s)	327, 635, 658, 869
BstSCI	CCNGG	4 cut(s)	325, 633, 656, 867
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	1197
BstV1I	GCAGC	5 cut(s)	53, 560, 649, 875, 941
BstV2I	GAAGAC	2 cut(s)	275, 846
BstX2I	RGATCY	4 cut(s)	456, 530, 817, 963
BstXI	CCANNNNNNTGG	2 cut(s)	641, 683
BstYI	RGATCY	4 cut(s)	456, 530, 817, 963
BsuRI	GGCC	2 cut(s)	189, 956
BtgI	CCRYGG	1 cut(s)	447
BtrI	CACGTC	1 cut(s)	264
BtsCI	GGATG	8 cut(s)	285, 323, 399, 672, 849, 1053, 1078, 1173
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	3 cut(s)	708, 721, 942
BveI	ACCTGC	1 cut(s)	502
Cfr13I	GGNCC	3 cut(s)	188, 437, 808
Csp6I	GTAC	2 cut(s)	469, 1046
CviQI	GTAC	2 cut(s)	469, 1046
DdeI	CTNAG	1 cut(s)	1097
DpnI	GATC	7 cut(s)	324, 390, 458, 522, 532, 819, 965
DpnII	GATC	7 cut(s)	322, 388, 456, 520, 530, 817, 963
Eam1104I	CTCTTC	3 cut(s)	535, 553, 773
EarI	CTCTTC	3 cut(s)	535, 553, 773
Eco130I	CCWWGG	2 cut(s)	447, 1057
Eco24I	GRGCYC	1 cut(s)	656
Eco32I	GATATC	2 cut(s)	212, 712
Eco47I	GGWCC	2 cut(s)	437, 808
Eco88I	CYCGRG	1 cut(s)	950
EcoO109I	RGGNCCY	2 cut(s)	188, 808
EcoRII	CCWGG	4 cut(s)	325, 633, 656, 867
EcoRV	GATATC	2 cut(s)	212, 712
EcoT14I	CCWWGG	2 cut(s)	447, 1057
EcoT38I	GRGCYC	1 cut(s)	656
ErhI	CCWWGG	2 cut(s)	447, 1057
FaqI	GGGAC	2 cut(s)	445, 821
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	5 cut(s)	42, 549, 663, 864, 930
FokI	GGATG	8 cut(s)	272, 330, 386, 659, 836, 1040, 1085, 1180
FriOI	GRGCYC	1 cut(s)	656
Fsp4HI	GCNGC	5 cut(s)	42, 549, 663, 864, 930
FspBI	CTAG	4 cut(s)	248, 350, 461, 743
GluI	GCNGC	5 cut(s)	42, 549, 663, 864, 930
GsuI	CTGGAG	1 cut(s)	1035
HaeIII	GGCC	2 cut(s)	189, 956
HapII	CCGG	1 cut(s)	1165
HincII	GTYRAC	2 cut(s)	226, 1192
HindII	GTYRAC	2 cut(s)	226, 1192
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	62
HpaI	GTTAAC	1 cut(s)	1192
HpaII	CCGG	1 cut(s)	1165
HphI	GGTGA	7 cut(s)	206, 250, 352, 364, 483, 929, 1096
Hpy166II	GTNNAC	6 cut(s)	83, 117, 226, 440, 1087, 1192
Hpy188I	TCNGA	3 cut(s)	164, 346, 1220
Hpy188III	TCNNGA	4 cut(s)	615, 995, 1014, 1165
Hpy8I	GTNNAC	6 cut(s)	83, 117, 226, 440, 1087, 1192
HpyAV	CCTTC	4 cut(s)	190, 766, 1126, 1186
HpyCH4III	ACNGT	6 cut(s)	296, 624, 845, 1027, 1157, 1213
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	7 cut(s)	117, 548, 701, 896, 1007, 1143, 1202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 581
HpyF3I	CTNAG	1 cut(s)	1097
HpySE526I	ACGT	1 cut(s)	263
KflI	GGGWCCC	1 cut(s)	808
Kpn2I	TCCGGA	1 cut(s)	1164
KspAI	GTTAAC	1 cut(s)	1192
Kzo9I	GATC	7 cut(s)	322, 388, 456, 520, 530, 817, 963
LmnI	GCTCC	3 cut(s)	659, 719, 1172
Lsp1109I	GCAGC	5 cut(s)	53, 560, 649, 875, 941
LweI	GCATC	4 cut(s)	308, 408, 535, 618
MaeI	CTAG	4 cut(s)	248, 350, 461, 743
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	5 cut(s)	502, 845, 1021, 1031, 1157
MalI	GATC	7 cut(s)	324, 390, 458, 522, 532, 819, 965
MboI	GATC	7 cut(s)	322, 388, 456, 520, 530, 817, 963
MboII	GAAGA	7 cut(s)	280, 552, 570, 790, 851, 983, 1088
MflI	RGATCY	4 cut(s)	456, 530, 817, 963
MhlI	GDGCHC	2 cut(s)	119, 656
MluCI	AATT	3 cut(s)	204, 476, 987
MlyI	GAGTC	1 cut(s)	56
MroI	TCCGGA	1 cut(s)	1164
MseI	TTAA	2 cut(s)	762, 1191
MslI	CAYNNNNRTG	4 cut(s)	177, 408, 681, 1155
MspI	CCGG	1 cut(s)	1165
MspR9I	CCNGG	4 cut(s)	327, 635, 658, 869
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	4 cut(s)	327, 635, 658, 869
MvnI	CGCG	1 cut(s)	1197
MwoI	GCNNNNNNNGC	2 cut(s)	14, 581
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	7 cut(s)	322, 388, 456, 520, 530, 817, 963
NlaIV	GGNNCC	9 cut(s)	190, 301, 438, 458, 655, 721, 809, 810, 1174
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	3 cut(s)	502, 845, 1157
OliI	CACNNNNGTG	1 cut(s)	1155
PaqCI	CACCTGC	1 cut(s)	502
PasI	CCCWGGG	1 cut(s)	868
PctI	GAATGC	1 cut(s)	247
PflMI	CCANNNNNTGG	2 cut(s)	296, 453
PkrI	GCNGC	5 cut(s)	43, 550, 664, 865, 931
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	808
Psp5II	RGGWCCY	1 cut(s)	808
Psp6I	CCWGG	4 cut(s)	325, 633, 656, 867
PspGI	CCWGG	4 cut(s)	325, 633, 656, 867
PspN4I	GGNNCC	9 cut(s)	190, 301, 438, 458, 655, 721, 809, 810, 1174
PspPI	GGNCC	3 cut(s)	188, 437, 808
PspPPI	RGGWCCY	1 cut(s)	808
PsuI	RGATCY	4 cut(s)	456, 530, 817, 963
RsaI	GTAC	2 cut(s)	470, 1047
RsaNI	GTAC	2 cut(s)	469, 1046
RseI	CAYNNNNRTG	4 cut(s)	177, 408, 681, 1155
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	762, 1191
SatI	GCNGC	5 cut(s)	42, 549, 663, 864, 930
Sau3AI	GATC	7 cut(s)	322, 388, 456, 520, 530, 817, 963
Sau96I	GGNCC	3 cut(s)	188, 437, 808
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	4 cut(s)	327, 635, 658, 869
SduI	GDGCHC	2 cut(s)	119, 656
SfaNI	GCATC	4 cut(s)	308, 408, 535, 618
SinI	GGWCC	2 cut(s)	437, 808
SmiMI	CAYNNNNRTG	4 cut(s)	177, 408, 681, 1155
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	3 cut(s)	204, 476, 987
SsiI	CCGC	2 cut(s)	275, 1195
SspI	AATATT	1 cut(s)	831
SspMI	CTAG	4 cut(s)	248, 350, 461, 743
StyD4I	CCNGG	4 cut(s)	325, 633, 656, 867
StyI	CCWWGG	2 cut(s)	447, 1057
TaaI	ACNGT	6 cut(s)	296, 624, 845, 1027, 1157, 1213
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	225
TasI	AATT	3 cut(s)	204, 476, 987
TatI	WGTACW	1 cut(s)	468
Tru1I	TTAA	2 cut(s)	762, 1191
Tru9I	TTAA	2 cut(s)	762, 1191
TscAI	CASTG	3 cut(s)	708, 721, 949
TseFI	GTSAC	3 cut(s)	502, 845, 1157
TseI	GCWGC	5 cut(s)	41, 548, 662, 863, 929
Tsp45I	GTSAC	3 cut(s)	502, 845, 1157
TspDTI	ATGAA	5 cut(s)	17, 138, 209, 470, 1089
TspRI	CASTG	3 cut(s)	708, 721, 949
Van91I	CCANNNNNTGG	2 cut(s)	296, 453
VneI	GTGCAC	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	437, 808
XapI	RAATTY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	2 cut(s)	683, 829
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	4 cut(s)	248, 350, 461, 743
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.