MD12G1003600.v1.1

Belongs to the Glu Leu Phe Val dehydrogenases family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
529101 .. 534362
5262 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1003600.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGATGAATGCATTAGTGGCAACGAACAGAAACTTTAAGTTGGCTGCTCGGCTTTTAGGATTGGACTCCAAGCTTGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGTTGAGTGTACTATACCGAAAGACGATGGTAGTTTGGCTTCATTTGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGAATCAGATATCACCCGGAGGTTGATCCAGATGAGGTGAATGCTTTAGCACAGCTGATGACATGGAAGACGGCAGTAGCCAACATCCCATATGGGGGTGCCAAAGGGGGTATAGGATGTAATCCAGGGGAGTTGAGTCTTTCCGAACTAGAGCGACTCACCAGAGTTTTCACACAAAAGATACACGATCTTATCGGAATTCACACCGATGTTCCAGCACCAGATATGGGGACAGGTCCACAGACCATGGCATGGATACTAGATGAGTACTCAAAGTTTCATGGCTACTCACCTGCAGTAGTGACTGGAAAACCTATTGATCTTGGTGGATCACTAGGAAGAGACGCAGCAACCGGAAGAGGAGTACTTTTTGCGACTGAGGCTTTACTCAATGAGTATGGAAAGAGCATCTCTGGGCAACGGTTTGTTATACAGGGTTTCGGGAACGTAGGCTCGTGGGCTGCCCAGCTAATCCATGAGAGTGGTGGCAAAATAGTTGCAGTGAGTGACATCACTGGAGCCCTAAAGAACAGCGAAGGAATTGACATTCCAAGCCTGGTCAAGCATGTCAAGGACAACAGGGGAGTCAAGGGCTTCCATGGTGGGGATCCAATAGAACCCTGCTCAATCTTGGTTGAAGACTGTGACATTCTCATTCCAGCAGCCCTAGGAGGTGTCATCAACAAGGAAAATGCAAATGACATAAAGGCTAAGTTTATAATCGAAGCGGCTAATCATCCCACTGACCCTGAGGCTGATGAGATCCTGTCAAAGAAGGGTGTTGTAATTCTTCCTGATATATATGCAAACTCTGGAGGAGTTACTGTTAGTTACTTTGAGTGGGTGCAGAACATTCAAGGATTCTTGTGGGATGAAGAGAAGGTGAACAATGAGCTCAAGACATACATGACCAAAGGCTTCAAAGGTGTGAAGGAGATGTGCAAAACCCATAACTGCGACCTCCGGATGGGAGCCTTCACGCTCGGAGTTAACCGCGTTGCAAGGGCGACTGTCCTCAGAGGGTGGGAGGCCTGA

Protein Analysis

413

Amino Acids

44.52

Weight (kDa)

6.09

Isoelectric Point (pI)

23.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELFV_dehydrog_N PF02812 34 - 160 1.2e-50 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog PF00208 177 - 409 9.5e-81 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 923
AarI CACCTGC 1 cut(s) 505
Acc36I ACCTGC 1 cut(s) 505
AccB1I GGYRCC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 456
AccII CGCG 1 cut(s) 1200
AccIII TCCGGA 1 cut(s) 1167
AciI CCGC 2 cut(s) 932, 1198
AclWI GGATC 5 cut(s) 224, 541, 806, 819, 961
AcsI RAATTY 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 148
AfaI GTAC 3 cut(s) 121, 473, 570
AfiI CCNNNNNNNGG 8 cut(s) 199, 200, 298, 299, 431, 456, 808, 1171
AgsI TTSAA 4 cut(s) 173, 842, 1061, 1126
AjnI CCWGG 2 cut(s) 328, 759
AluBI AGCT 4 cut(s) 73, 259, 673, 1099
AluI AGCT 4 cut(s) 73, 259, 673, 1099
Alw21I GWGCWC 1 cut(s) 1101
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 5 cut(s) 224, 541, 806, 819, 961
Aor13HI TCCGGA 1 cut(s) 1167
AoxI GGCC 2 cut(s) 190, 1233
ApeKI GCWGC 4 cut(s) 44, 551, 665, 866
ApoI RAATTY 1 cut(s) 402
AspA2I CCTAGG 1 cut(s) 871
AspS9I GGNCC 2 cut(s) 191, 440
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 5 cut(s) 209, 253, 355, 486, 1099
AvaII GGWCC 1 cut(s) 440
AvrII CCTAGG 1 cut(s) 871
AxyI CCTNAGG 1 cut(s) 954
BamHI GGATCC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 727, 1101
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
BauI CACGAG 1 cut(s) 658
BbsI GAAGAC 2 cut(s) 278, 849
Bbv12I GWGCWC 1 cut(s) 1101
BbvI GCAGC 4 cut(s) 31, 563, 652, 878
BccI CCATC 2 cut(s) 131, 1165
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 2 cut(s) 330, 761
BciVI GTATCC 1 cut(s) 453
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 5 cut(s) 186, 353, 464, 539, 872
BfmI CTRYAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 505
BfuI GTATCC 1 cut(s) 453
BisI GCNGC 5 cut(s) 45, 552, 666, 867, 933
BlnI CCTAGG 1 cut(s) 871
BlsI GCNGC 5 cut(s) 46, 553, 667, 868, 934
BmcAI AGTACT 2 cut(s) 473, 570
Bme1390I CCNGG 3 cut(s) 221, 330, 761
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 2 cut(s) 191, 440
BmiI GGNNCC 5 cut(s) 193, 304, 724, 813, 1177
BmrFI CCNGG 3 cut(s) 221, 330, 761
BmsI GCATC 1 cut(s) 621
BpiI GAAGAC 2 cut(s) 278, 849
BpmI CTGGAG 2 cut(s) 741, 1038
BpuEI CTTGAG 2 cut(s) 95, 1085
BpuMI CCSGG 1 cut(s) 221
BsaJI CCNNGG 4 cut(s) 329, 450, 802, 871
BsaWI WCCGGW 2 cut(s) 557, 1167
BsaXI ACNNNNNCTCC 2 cut(s) 1014, 1044
Bsc4I CCNNNNNNNGG 8 cut(s) 199, 200, 298, 299, 431, 456, 808, 1171
Bse1I ACTGG 2 cut(s) 514, 724
Bse21I CCTNAGG 1 cut(s) 954
BseAI TCCGGA 1 cut(s) 1167
BseBI CCWGG 2 cut(s) 330, 761
BseDI CCNNGG 4 cut(s) 329, 450, 802, 871
BseGI GGATG 5 cut(s) 288, 326, 940, 1081, 1176
BseLI CCNNNNNNNGG 8 cut(s) 199, 200, 298, 299, 431, 456, 808, 1171
BseMII CTCAG 3 cut(s) 573, 945, 1234
BseNI ACTGG 2 cut(s) 514, 724
BseRI GAGGAG 2 cut(s) 579, 1035
BseXI GCAGC 4 cut(s) 31, 563, 652, 878
BseYI CCCAGC 1 cut(s) 669
BsgI GTGCAG 1 cut(s) 1070
Bsh1236I CGCG 1 cut(s) 1200
BshFI GGCC 2 cut(s) 192, 1235
BshNI GGYRCC 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 1101
BsiSI CCGG 3 cut(s) 221, 558, 1168
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 8 cut(s) 199, 200, 298, 299, 431, 456, 808, 1171
BsmAI GTCTC 1 cut(s) 540
BsmBI CGTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 2 cut(s) 13, 250
BsnI GGCC 2 cut(s) 192, 1235
Bsp1286I GDGCHC 2 cut(s) 727, 1101
Bsp13I TCCGGA 1 cut(s) 1167
Bsp143I GATC 6 cut(s) 229, 391, 523, 533, 811, 966
Bsp19I CCATGG 2 cut(s) 450, 802
BspACI CCGC 2 cut(s) 932, 1198
BspANI GGCC 2 cut(s) 192, 1235
BspCNI CTCAG 3 cut(s) 574, 946, 1233
BspEI TCCGGA 1 cut(s) 1167
BspFNI CGCG 1 cut(s) 1200
BspLI GGNNCC 5 cut(s) 193, 304, 724, 813, 1177
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 5 cut(s) 224, 541, 806, 819, 961
BspT107I GGYRCC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 514, 724
BssECI CCNNGG 4 cut(s) 329, 450, 802, 871
BssMI GATC 6 cut(s) 229, 391, 523, 533, 811, 966
BssSI CACGAG 1 cut(s) 658
BssT1I CCWWGG 3 cut(s) 450, 802, 871
Bst2BI CACGAG 1 cut(s) 658
Bst2UI CCWGG 2 cut(s) 330, 761
Bst4CI ACNGT 4 cut(s) 627, 848, 1030, 1216
Bst6I CTCTTC 3 cut(s) 538, 556, 1074
BstDEI CTNAG 4 cut(s) 582, 915, 954, 1220
BstDSI CCRYGG 2 cut(s) 450, 802
BstF5I GGATG 5 cut(s) 288, 326, 940, 1081, 1176
BstFNI CGCG 1 cut(s) 1200
BstKTI GATC 6 cut(s) 232, 394, 526, 536, 814, 969
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 6 cut(s) 229, 391, 523, 533, 811, 966
BstMWI GCNNNNNNNGC 2 cut(s) 17, 584
BstNI CCWGG 2 cut(s) 330, 761
BstNSI RCATGY 1 cut(s) 773
BstSCI CCNGG 3 cut(s) 219, 328, 759
BstSFI CTRYAG 1 cut(s) 498
BstUI CGCG 1 cut(s) 1200
BstV1I GCAGC 4 cut(s) 31, 563, 652, 878
BstV2I GAAGAC 2 cut(s) 278, 849
BstX2I RGATCY 2 cut(s) 811, 966
BstXI CCANNNNNNTGG 1 cut(s) 686
BstYI RGATCY 2 cut(s) 811, 966
Bsu36I CCTNAGG 1 cut(s) 954
BsuI GTATCC 1 cut(s) 453
BsuRI GGCC 2 cut(s) 192, 1235
BtgI CCRYGG 2 cut(s) 450, 802
BtsCI GGATG 5 cut(s) 288, 326, 940, 1081, 1176
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 3 cut(s) 711, 717, 945
BveI ACCTGC 1 cut(s) 505
Cfr13I GGNCC 2 cut(s) 191, 440
CseI GACGC 1 cut(s) 557
Csp6I GTAC 3 cut(s) 120, 472, 569
CviQI GTAC 3 cut(s) 120, 472, 569
DdeI CTNAG 4 cut(s) 582, 915, 954, 1220
DpnI GATC 6 cut(s) 231, 393, 525, 535, 813, 968
DpnII GATC 6 cut(s) 229, 391, 523, 533, 811, 966
Eam1104I CTCTTC 3 cut(s) 538, 556, 1074
EarI CTCTTC 3 cut(s) 538, 556, 1074
Ecl136II GAGCTC 1 cut(s) 1099
Eco130I CCWWGG 3 cut(s) 450, 802, 871
Eco147I AGGCCT 1 cut(s) 1235
Eco24I GRGCYC 2 cut(s) 727, 1101
Eco32I GATATC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 440
Eco53kI GAGCTC 1 cut(s) 1099
Eco57I CTGAAG 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 954
EcoICRI GAGCTC 1 cut(s) 1099
EcoO109I RGGNCCY 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 402
EcoRII CCWGG 2 cut(s) 328, 759
EcoRV GATATC 1 cut(s) 215
EcoT14I CCWWGG 3 cut(s) 450, 802, 871
EcoT22I ATGCAT 1 cut(s) 13
EcoT38I GRGCYC 2 cut(s) 727, 1101
ErhI CCWWGG 3 cut(s) 450, 802, 871
Esp3I CGTCTC 1 cut(s) 540
FaqI GGGAC 1 cut(s) 448
FauNDI CATATG 1 cut(s) 295
Fnu4HI GCNGC 5 cut(s) 45, 552, 666, 867, 933
FokI GGATG 5 cut(s) 275, 333, 927, 1088, 1183
FriOI GRGCYC 2 cut(s) 727, 1101
Fsp4HI GCNGC 5 cut(s) 45, 552, 666, 867, 933
FspBI CTAG 5 cut(s) 186, 353, 464, 539, 872
GluI GCNGC 5 cut(s) 45, 552, 666, 867, 933
GsaI CCCAGC 1 cut(s) 673
GsuI CTGGAG 2 cut(s) 741, 1038
HaeIII GGCC 2 cut(s) 192, 1235
HapII CCGG 3 cut(s) 221, 558, 1168
HgaI GACGC 1 cut(s) 557
HincII GTYRAC 1 cut(s) 1195
HindII GTYRAC 1 cut(s) 1195
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 6 cut(s) 65, 207, 340, 360, 789, 1065
HpaI GTTAAC 1 cut(s) 1195
HpaII CCGG 3 cut(s) 221, 558, 1168
HphI GGTGA 5 cut(s) 209, 253, 355, 486, 1099
Hpy166II GTNNAC 5 cut(s) 86, 120, 443, 1090, 1195
Hpy188I TCNGA 5 cut(s) 212, 349, 401, 1190, 1223
Hpy188III TCNNGA 6 cut(s) 233, 646, 998, 1017, 1102, 1168
Hpy8I GTNNAC 5 cut(s) 86, 120, 443, 1090, 1195
HpyAV CCTTC 6 cut(s) 193, 734, 973, 1078, 1129, 1189
HpyCH4III ACNGT 4 cut(s) 627, 848, 1030, 1216
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 8 cut(s) 11, 500, 704, 899, 1010, 1051, 1146, 1205
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 584
HpyF3I CTNAG 4 cut(s) 582, 915, 954, 1220
HpySE526I ACGT 1 cut(s) 651
Kpn2I TCCGGA 1 cut(s) 1167
KspAI GTTAAC 1 cut(s) 1195
Kzo9I GATC 6 cut(s) 229, 391, 523, 533, 811, 966
LmnI GCTCC 2 cut(s) 722, 1175
Lsp1109I GCAGC 4 cut(s) 31, 563, 652, 878
LweI GCATC 1 cut(s) 621
MaeI CTAG 5 cut(s) 186, 353, 464, 539, 872
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 5 cut(s) 505, 710, 848, 1024, 1034
MalI GATC 6 cut(s) 231, 393, 525, 535, 813, 968
MboI GATC 6 cut(s) 229, 391, 523, 533, 811, 966
MboII GAAGA 6 cut(s) 283, 555, 573, 854, 986, 1091
MflI RGATCY 2 cut(s) 811, 966
MhlI GDGCHC 2 cut(s) 727, 1101
MluCI AATT 3 cut(s) 402, 744, 990
MlyI GAGTC 4 cut(s) 59, 349, 354, 798
Mph1103I ATGCAT 1 cut(s) 13
MroI TCCGGA 1 cut(s) 1167
MseI TTAA 2 cut(s) 36, 1194
MslI CAYNNNNRTG 3 cut(s) 180, 411, 684
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 3 cut(s) 221, 558, 1168
MspR9I CCNGG 3 cut(s) 221, 330, 761
Mva1269I GAATGC 2 cut(s) 13, 250
MvaI CCWGG 2 cut(s) 330, 761
MvnI CGCG 1 cut(s) 1200
MwoI GCNNNNNNNGC 2 cut(s) 17, 584
NciI CCSGG 1 cut(s) 221
NcoI CCATGG 2 cut(s) 450, 802
NdeI CATATG 1 cut(s) 295
NdeII GATC 6 cut(s) 229, 391, 523, 533, 811, 966
NlaIV GGNNCC 5 cut(s) 193, 304, 724, 813, 1177
NmeAIII GCCGAG 1 cut(s) 28
NmuCI GTSAC 3 cut(s) 505, 710, 848
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 1 cut(s) 773
PaqCI CACCTGC 1 cut(s) 505
PceI AGGCCT 1 cut(s) 1235
PctI GAATGC 2 cut(s) 13, 250
PfeI GAWTC 2 cut(s) 207, 1065
PflMI CCANNNNNTGG 1 cut(s) 456
PkrI GCNGC 5 cut(s) 46, 553, 667, 868, 934
PleI GAGTC 4 cut(s) 59, 348, 354, 797
PpsI GAGTC 4 cut(s) 59, 348, 354, 797
PsiI TTATAA 1 cut(s) 923
Psp124BI GAGCTC 1 cut(s) 1101
Psp6I CCWGG 2 cut(s) 328, 759
PspFI CCCAGC 1 cut(s) 669
PspGI CCWGG 2 cut(s) 328, 759
PspN4I GGNNCC 5 cut(s) 193, 304, 724, 813, 1177
PspPI GGNCC 2 cut(s) 191, 440
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 2 cut(s) 811, 966
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 3 cut(s) 121, 473, 570
RsaNI GTAC 3 cut(s) 120, 472, 569
RseI CAYNNNNRTG 3 cut(s) 180, 411, 684
SacI GAGCTC 1 cut(s) 1101
SaqAI TTAA 2 cut(s) 36, 1194
SatI GCNGC 5 cut(s) 45, 552, 666, 867, 933
Sau3AI GATC 6 cut(s) 229, 391, 523, 533, 811, 966
Sau96I GGNCC 2 cut(s) 191, 440
ScaI AGTACT 2 cut(s) 473, 570
SchI GAGTC 4 cut(s) 59, 349, 354, 798
ScrFI CCNGG 3 cut(s) 221, 330, 761
SduI GDGCHC 2 cut(s) 727, 1101
SfaNI GCATC 1 cut(s) 621
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 3 cut(s) 180, 411, 684
SmlI CTYRAG 2 cut(s) 74, 1100
SmoI CTYRAG 2 cut(s) 74, 1100
Sse9I AATT 3 cut(s) 402, 744, 990
SseBI AGGCCT 1 cut(s) 1235
SsiI CCGC 2 cut(s) 932, 1198
SspMI CTAG 5 cut(s) 186, 353, 464, 539, 872
SstI GAGCTC 1 cut(s) 1101
StuI AGGCCT 1 cut(s) 1235
StyD4I CCNGG 3 cut(s) 219, 328, 759
StyI CCWWGG 3 cut(s) 450, 802, 871
TaaI ACNGT 4 cut(s) 627, 848, 1030, 1216
TaiI ACGT 1 cut(s) 654
TaqI TCGA 1 cut(s) 927
TasI AATT 3 cut(s) 402, 744, 990
TatI WGTACW 3 cut(s) 119, 471, 568
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 2 cut(s) 207, 1065
Tru1I TTAA 2 cut(s) 36, 1194
Tru9I TTAA 2 cut(s) 36, 1194
TscAI CASTG 3 cut(s) 711, 724, 952
TseFI GTSAC 3 cut(s) 505, 710, 848
TseI GCWGC 4 cut(s) 44, 551, 665, 866
Tsp45I GTSAC 3 cut(s) 505, 710, 848
TspDTI ATGAA 5 cut(s) 20, 141, 212, 473, 1092
TspRI CASTG 3 cut(s) 711, 724, 952
Van91I CCANNNNNTGG 1 cut(s) 456
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 1 cut(s) 402
XceI RCATGY 1 cut(s) 773
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XmaJI CCTAGG 1 cut(s) 871
XspI CTAG 5 cut(s) 186, 353, 464, 539, 872
ZrmI AGTACT 2 cut(s) 473, 570
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.