Rorug03G0289800

Belongs to the Glu Leu Phe Val dehydrogenases family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
29424032 .. 29425644
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0289800.1

Sequence Viewer

Length: 1026 bp
ATGGCTCCTGAGCTCGTTCCCTCCGTTCCGAAATCCACGGGCTTCACCCGACCCGCCACCCTTCCGAGGCGTGCGTACGTCACTTTCTTGGCCGGCAACGGTGACTACGTGAAAGGCGTAGTCGGATTGGCCAAGGGCTTGAGGAAGGCCAAAACGGCGTACCCTTTAGTCGTTGCGGTATTGCCCGACGTCCCTGAAGACCACCGCCGCATTCTTGAGTCGCAGGGTTGCATCGTCCGGGAAATCGAACCCGTTTACCCTCCGGAGAACCAGACCCAGTTCGCCATGGCCTATTACGTCATCAACTATTCCAAGCTCCGTATATGGGAGTTTGTGGAATACGACAAGATGGTATACCTGGACGGAGACATTCAGGTGTTCGACAATATAGACCACCTCTTTGACCTGCCGGACGGCAACTTCTACGCCGTGATGGACTGTTTCTGCGAGAAAACGTGGAGCCACACGCCGCAGTACAAGATCGGGTACTGCCAGCAGTGCCCGGAAAGAGTCAAGTGGGACACCGAGCTGGGCCCACCTCCGTCGCTCTACTTCAACGCCGGGATGTTCGTGTTCGAGCCCAGCGTTTTGACCTACCAAGATCTTTTGAAGACCGTCAAGGTCGCCCCAACGACACCGTTTGCGGAGCAGGACTTCTTGAACATGTATTTCAGGGATATTTACAAGCCAATCCCTCCGGCTTACAATTTGGTCCTGGCCATGTTGTGGCGTCACCCCGAGAATGTTGAGCTCGACAAAGTGAAAGTCGTGCATTACTGTGCAGCAGGATCAAAGCCATGGAGGTATACTGGGAAGGAAGAGAACATGCAGAGGGAGGACATCAAGATGTTGGTGCAGAAATGGTGGGACATTTACAACGACGAGTCGTTGGACTACAAGAAGCAGCGGAGCAATGCTGTGGTTGCGGCGGTTGAGGCTGCGCAAGCGGTGGACATGCAGCCTTTCATTGAGGCTCTATCCGAAGCCGGTGCTTTCCAGTATGTGACTGCCCCTTCTGCGGCTTAG

Protein Analysis

341

Amino Acids

39.05

Weight (kDa)

5.3

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 28 - 270 3.9e-44 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 192
Acc16I TGCGCA 1 cut(s) 942
Acc36I ACCTGC 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 726
AccI GTMKAC 2 cut(s) 354, 806
AccIII TCCGGA 1 cut(s) 262
AclWI GGATC 1 cut(s) 796
AcoI YGGCCR 3 cut(s) 90, 129, 717
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 2 cut(s) 189, 730
AfaI GTAC 4 cut(s) 77, 161, 476, 488
AfiI CCNNNNNNNGG 4 cut(s) 66, 325, 726, 1018
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 3 cut(s) 556, 610, 661
AjnI CCWGG 2 cut(s) 357, 714
AluBI AGCT 4 cut(s) 13, 316, 529, 751
AluI AGCT 4 cut(s) 13, 316, 529, 751
Alw21I GWGCWC 2 cut(s) 15, 753
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 1 cut(s) 796
Ama87I CYCGRG 1 cut(s) 737
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 6 cut(s) 90, 129, 147, 288, 532, 717
ApaI GGGCCC 1 cut(s) 536
ApeKI GCWGC 4 cut(s) 782, 904, 938, 958
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 750, 782
AspLEI GCGC 1 cut(s) 943
AspS9I GGNCC 3 cut(s) 532, 533, 712
AsuC2I CCSGG 3 cut(s) 239, 503, 562
AsuHPI GGTGA 3 cut(s) 37, 113, 725
AvaI CYCGRG 1 cut(s) 737
AvaII GGWCC 1 cut(s) 712
BaeGI GKGCMC 2 cut(s) 503, 536
BalI TGGCCA 2 cut(s) 131, 719
BanII GRGCYC 4 cut(s) 15, 536, 582, 753
BbsI GAAGAC 2 cut(s) 204, 617
Bbv12I GWGCWC 2 cut(s) 15, 753
BbvI GCAGC 4 cut(s) 794, 916, 925, 970
BccI CCATC 2 cut(s) 343, 427
BceAI ACGGC 3 cut(s) 171, 413, 430
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BciT130I CCWGG 2 cut(s) 359, 716
BcnI CCSGG 3 cut(s) 239, 503, 562
BcoDI GTCTC 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 155
BglII AGATCT 1 cut(s) 601
BisI GCNGC 8 cut(s) 208, 470, 783, 905, 927, 939, 959, 1020
BlsI GCNGC 8 cut(s) 209, 471, 784, 906, 928, 940, 960, 1021
Bme1390I CCNGG 5 cut(s) 239, 359, 503, 562, 716
Bme18I GGWCC 1 cut(s) 712
BmeT110I CYCGRG 1 cut(s) 737
BmgT120I GGNCC 3 cut(s) 532, 533, 712
BmiI GGNNCC 3 cut(s) 6, 461, 534
BmrFI CCNGG 5 cut(s) 239, 359, 503, 562, 716
BmrI ACTGGG 2 cut(s) 271, 819
BmsI GCATC 1 cut(s) 240
BmuI ACTGGG 2 cut(s) 271, 819
BpiI GAAGAC 2 cut(s) 204, 617
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 160, 236
BpuMI CCSGG 3 cut(s) 239, 503, 562
BsaAI YACGTR 1 cut(s) 109
BsaHI GRCGYC 2 cut(s) 189, 730
BsaJI CCNNGG 5 cut(s) 36, 65, 132, 285, 797
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 325, 726, 1018
Bse118I RCCGGY 2 cut(s) 92, 986
Bse1I ACTGG 3 cut(s) 277, 814, 997
Bse3DI GCAATG 1 cut(s) 919
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 2 cut(s) 359, 716
BseDI CCNNGG 5 cut(s) 36, 65, 132, 285, 797
BseGI GGATG 1 cut(s) 570
BseLI CCNNNNNNNGG 4 cut(s) 66, 325, 726, 1018
BseMI GCAATG 1 cut(s) 919
BseNI ACTGG 3 cut(s) 277, 814, 997
BseSI GKGCMC 2 cut(s) 503, 536
BseXI GCAGC 4 cut(s) 794, 916, 925, 970
BseYI CCCAGC 2 cut(s) 529, 581
BsgI GTGCAG 2 cut(s) 801, 875
BshFI GGCC 6 cut(s) 92, 131, 149, 290, 534, 719
BsiHKAI GWGCWC 2 cut(s) 15, 753
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 8 cut(s) 93, 238, 263, 410, 503, 561, 698, 987
BsiWI CGTACG 1 cut(s) 75
BslFI GGGAC 3 cut(s) 176, 533, 881
BslI CCNNNNNNNGG 4 cut(s) 66, 325, 726, 1018
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 3 cut(s) 176, 533, 881
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 6 cut(s) 92, 131, 149, 290, 534, 719
BsoBI CYCGRG 1 cut(s) 737
Bsp120I GGGCCC 1 cut(s) 532
Bsp1286I GDGCHC 5 cut(s) 15, 503, 536, 582, 753
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 3 cut(s) 480, 601, 788
Bsp19I CCATGG 2 cut(s) 285, 797
BspANI GGCC 6 cut(s) 92, 131, 149, 290, 534, 719
BspEI TCCGGA 1 cut(s) 262
BspLI GGNNCC 3 cut(s) 6, 461, 534
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 1 cut(s) 796
BsrDI GCAATG 1 cut(s) 919
BsrFI RCCGGY 2 cut(s) 92, 986
BsrI ACTGG 3 cut(s) 277, 814, 997
BssAI RCCGGY 2 cut(s) 92, 986
BssECI CCNNGG 5 cut(s) 36, 65, 132, 285, 797
BssMI GATC 3 cut(s) 480, 601, 788
BssNAI GTATAC 2 cut(s) 355, 807
BssNI GRCGYC 2 cut(s) 189, 730
BssT1I CCWWGG 3 cut(s) 132, 285, 797
Bst1107I GTATAC 2 cut(s) 355, 807
Bst2UI CCWGG 2 cut(s) 359, 716
Bst4CI ACNGT 5 cut(s) 101, 440, 616, 639, 779
Bst6I CTCTTC 1 cut(s) 813
BstACI GRCGYC 2 cut(s) 189, 730
BstBAI YACGTR 1 cut(s) 109
BstC8I GCNNGC 4 cut(s) 72, 94, 494, 945
BstDEI CTNAG 2 cut(s) 9, 1023
BstDSI CCRYGG 3 cut(s) 36, 285, 797
BstF5I GGATG 1 cut(s) 570
BstHHI GCGC 1 cut(s) 943
BstKTI GATC 3 cut(s) 483, 604, 791
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 3 cut(s) 480, 601, 788
BstMWI GCNNNNNNNGC 6 cut(s) 155, 498, 923, 935, 944, 1016
BstNI CCWGG 2 cut(s) 359, 716
BstNSI RCATGY 3 cut(s) 667, 829, 958
BstSCI CCNGG 5 cut(s) 237, 357, 501, 560, 714
BstSLI GKGCMC 2 cut(s) 503, 536
BstV1I GCAGC 4 cut(s) 794, 916, 925, 970
BstV2I GAAGAC 2 cut(s) 204, 617
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BstZ17I GTATAC 2 cut(s) 355, 807
BsuRI GGCC 6 cut(s) 92, 131, 149, 290, 534, 719
BtgI CCRYGG 3 cut(s) 36, 285, 797
BtsCI GGATG 1 cut(s) 570
BtsI GCAGTG 1 cut(s) 503
BtsIMutI CAGTG 1 cut(s) 503
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 4 cut(s) 72, 94, 494, 945
CfoI GCGC 1 cut(s) 943
Cfr10I RCCGGY 2 cut(s) 92, 986
Cfr13I GGNCC 3 cut(s) 532, 533, 712
CseI GACGC 1 cut(s) 719
Csp6I GTAC 4 cut(s) 76, 160, 475, 487
CviAII CATG 6 cut(s) 286, 664, 721, 798, 826, 955
CviQI GTAC 4 cut(s) 76, 160, 475, 487
DdeI CTNAG 2 cut(s) 9, 1023
DpnI GATC 3 cut(s) 482, 603, 790
DpnII GATC 3 cut(s) 480, 601, 788
EaeI YGGCCR 3 cut(s) 90, 129, 717
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
Ecl136II GAGCTC 2 cut(s) 13, 751
Eco130I CCWWGG 3 cut(s) 132, 285, 797
Eco24I GRGCYC 4 cut(s) 15, 536, 582, 753
Eco47I GGWCC 1 cut(s) 712
Eco53kI GAGCTC 2 cut(s) 13, 751
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 737
EcoICRI GAGCTC 2 cut(s) 13, 751
EcoRII CCWGG 2 cut(s) 357, 714
EcoT14I CCWWGG 3 cut(s) 132, 285, 797
EcoT38I GRGCYC 4 cut(s) 15, 536, 582, 753
ErhI CCWWGG 3 cut(s) 132, 285, 797
FaeI CATG 6 cut(s) 289, 667, 724, 801, 829, 958
FaqI GGGAC 3 cut(s) 176, 533, 881
FatI CATG 6 cut(s) 285, 663, 720, 797, 825, 954
FauI CCCGC 1 cut(s) 61
FblI GTMKAC 2 cut(s) 354, 806
Fnu4HI GCNGC 8 cut(s) 208, 470, 783, 905, 927, 939, 959, 1020
FokI GGATG 1 cut(s) 577
FriOI GRGCYC 4 cut(s) 15, 536, 582, 753
Fsp4HI GCNGC 8 cut(s) 208, 470, 783, 905, 927, 939, 959, 1020
FspI TGCGCA 1 cut(s) 942
GlaI GCGC 1 cut(s) 942
GluI GCNGC 8 cut(s) 208, 470, 783, 905, 927, 939, 959, 1020
GsaI CCCAGC 2 cut(s) 533, 585
HaeIII GGCC 6 cut(s) 92, 131, 149, 290, 534, 719
HapII CCGG 8 cut(s) 93, 238, 263, 410, 503, 561, 698, 987
HgaI GACGC 1 cut(s) 719
HhaI GCGC 1 cut(s) 943
Hin1I GRCGYC 2 cut(s) 189, 730
Hin1II CATG 6 cut(s) 289, 667, 724, 801, 829, 958
Hin6I GCGC 1 cut(s) 941
HinP1I GCGC 1 cut(s) 941
HinfI GANTC 3 cut(s) 218, 510, 884
HpaII CCGG 8 cut(s) 93, 238, 263, 410, 503, 561, 698, 987
HphI GGTGA 3 cut(s) 37, 113, 725
Hpy166II GTNNAC 4 cut(s) 256, 355, 807, 952
Hpy188I TCNGA 4 cut(s) 30, 66, 125, 982
Hpy188III TCNNGA 5 cut(s) 8, 215, 263, 658, 844
Hpy8I GTNNAC 4 cut(s) 256, 355, 807, 952
Hpy99I CGWCG 3 cut(s) 191, 547, 884
HpyAV CCTTC 4 cut(s) 71, 139, 808, 1023
HpyCH4III ACNGT 5 cut(s) 101, 440, 616, 639, 779
HpyCH4IV ACGT 5 cut(s) 78, 108, 189, 297, 455
HpyCH4V TGCA 6 cut(s) 231, 772, 782, 829, 856, 958
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 498, 923, 935, 944, 1016
HpyF3I CTNAG 2 cut(s) 9, 1023
HpySE526I ACGT 5 cut(s) 78, 108, 189, 297, 455
Hsp92I GRCGYC 2 cut(s) 189, 730
Hsp92II CATG 6 cut(s) 289, 667, 724, 801, 829, 958
HspAI GCGC 1 cut(s) 941
Kpn2I TCCGGA 1 cut(s) 262
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 3 cut(s) 480, 601, 788
LmnI GCTCC 5 cut(s) 10, 321, 459, 646, 909
Lsp1109I GCAGC 4 cut(s) 794, 916, 925, 970
LweI GCATC 1 cut(s) 240
MaeII ACGT 5 cut(s) 78, 108, 189, 297, 455
MaeIII GTNAC 4 cut(s) 79, 101, 731, 1003
MalI GATC 3 cut(s) 482, 603, 790
MboI GATC 3 cut(s) 480, 601, 788
MboII GAAGA 3 cut(s) 209, 622, 830
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 5 cut(s) 15, 503, 536, 582, 753
MlsI TGGCCA 2 cut(s) 131, 719
MluCI AATT 1 cut(s) 706
MluNI TGGCCA 2 cut(s) 131, 719
MlyI GAGTC 3 cut(s) 227, 519, 893
MmeI TCCRAC 2 cut(s) 103, 870
Mox20I TGGCCA 2 cut(s) 131, 719
MroI TCCGGA 1 cut(s) 262
MroNI GCCGGC 1 cut(s) 92
MscI TGGCCA 2 cut(s) 131, 719
MslI CAYNNNNRTG 3 cut(s) 374, 777, 845
Msp20I TGGCCA 2 cut(s) 131, 719
MspA1I CMGCKG 1 cut(s) 907
MspI CCGG 8 cut(s) 93, 238, 263, 410, 503, 561, 698, 987
MspR9I CCNGG 5 cut(s) 239, 359, 503, 562, 716
Mva1269I GAATGC 1 cut(s) 210
MvaI CCWGG 2 cut(s) 359, 716
MwoI GCNNNNNNNGC 6 cut(s) 155, 498, 923, 935, 944, 1016
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 3 cut(s) 239, 503, 562
NcoI CCATGG 2 cut(s) 285, 797
NdeII GATC 3 cut(s) 480, 601, 788
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 6 cut(s) 289, 667, 724, 801, 829, 958
NlaIV GGNNCC 3 cut(s) 6, 461, 534
NmuCI GTSAC 4 cut(s) 79, 101, 731, 1003
NsbI TGCGCA 1 cut(s) 942
NspI RCATGY 3 cut(s) 667, 829, 958
PciI ACATGT 1 cut(s) 663
PcsI WCGNNNNNNNCGW 4 cut(s) 21, 105, 114, 582
PctI GAATGC 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 94
Pfl23II CGTACG 1 cut(s) 75
PflMI CCANNNNNTGG 1 cut(s) 726
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 8 cut(s) 209, 471, 784, 906, 928, 940, 960, 1021
PleI GAGTC 3 cut(s) 226, 518, 892
PpsI GAGTC 3 cut(s) 226, 518, 892
Ppu21I YACGTR 1 cut(s) 109
PscI ACATGT 1 cut(s) 663
Psp124BI GAGCTC 2 cut(s) 15, 753
Psp6I CCWGG 2 cut(s) 357, 714
PspFI CCCAGC 2 cut(s) 529, 581
PspGI CCWGG 2 cut(s) 357, 714
PspLI CGTACG 1 cut(s) 75
PspN4I GGNNCC 3 cut(s) 6, 461, 534
PspOMI GGGCCC 1 cut(s) 532
PspPI GGNCC 3 cut(s) 532, 533, 712
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 4 cut(s) 77, 161, 476, 488
RsaNI GTAC 4 cut(s) 76, 160, 475, 487
RseI CAYNNNNRTG 3 cut(s) 374, 777, 845
SacI GAGCTC 2 cut(s) 15, 753
SatI GCNGC 8 cut(s) 208, 470, 783, 905, 927, 939, 959, 1020
Sau3AI GATC 3 cut(s) 480, 601, 788
Sau96I GGNCC 3 cut(s) 532, 533, 712
SchI GAGTC 3 cut(s) 227, 519, 893
ScrFI CCNGG 5 cut(s) 239, 359, 503, 562, 716
SduI GDGCHC 5 cut(s) 15, 503, 536, 582, 753
SfaNI GCATC 1 cut(s) 240
SinI GGWCC 1 cut(s) 712
SmiMI CAYNNNNRTG 3 cut(s) 374, 777, 845
SmlI CTYRAG 2 cut(s) 139, 215
SmoI CTYRAG 2 cut(s) 139, 215
Sse9I AATT 1 cut(s) 706
SstI GAGCTC 2 cut(s) 15, 753
StyD4I CCNGG 5 cut(s) 237, 357, 501, 560, 714
StyI CCWWGG 3 cut(s) 132, 285, 797
TaaI ACNGT 5 cut(s) 101, 440, 616, 639, 779
TaiI ACGT 5 cut(s) 81, 111, 192, 300, 458
TaqI TCGA 4 cut(s) 246, 381, 576, 753
TasI AATT 1 cut(s) 706
TatI WGTACW 1 cut(s) 474
TauI GCSGC 4 cut(s) 210, 472, 929, 1022
TscAI CASTG 1 cut(s) 503
TseFI GTSAC 4 cut(s) 79, 101, 731, 1003
TseI GCWGC 4 cut(s) 782, 904, 938, 958
Tsp45I GTSAC 4 cut(s) 79, 101, 731, 1003
TspDTI ATGAA 1 cut(s) 955
TspGWI ACGGA 4 cut(s) 13, 308, 378, 531
TspRI CASTG 1 cut(s) 503
Van91I CCANNNNNTGG 1 cut(s) 726
VpaK11BI GGWCC 1 cut(s) 712
XceI RCATGY 3 cut(s) 667, 829, 958
XmiI GTMKAC 2 cut(s) 354, 806
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.