Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003303

Physical Location & Seq

Genomic Coordinates Forward (+)

29456283 .. 29456822

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0290000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTTCTGACAACCATAGCTGGTCGATAGTACTGTTTCTTGCTCTCCTTTTGTACTATCACTCAATCGTCGTCACTGCAGCTGATCAAGCCTTGCTTGACAAAATCTGCAAGCTGGCTCAGAGTTACGATTTTTGCCTCTCAACACTGCGCAACGACCCACGTACTGCTCAAGCTGACCTTCGTGGCCTTTCCCTAATCTCCATTGCAATAACCATTGATGAAGTACGAGATGTTTCCGATCGACTGCCTAACATTCCTGTACCTAATCATCCCGTCGATCAGCAACGGAAAAAAGCTTGTCAGACTGATTATAGTGACGCATTAGCCAGTTTCCAGAAGGCTTACCAGACCTCAGCTAAAGGGGATTACTGGGGTGTGATCGACTTGGTGAGGGTTGGAGCAAACAAAGCTATAGATTGCGAAGACATATACAAGAGAGATCCGATAAGCGTGTCACCAGTCTCTACAGATAACCACAAAGTGATTCAGCTTGCAGAGATCACTTTAATTGTTATTGATTTTCTAACCAGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

179

Amino Acids

20.0

Weight (kDa)

5.65

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	32 - 170	7.9e-13	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03910 AT3G03910 AT5G18170
fragaria_vesca	FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120
malus_domestica	MD12G1003600.v1.1 MD14G1002500.v1.1
prunus_persica	Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1
pyrus_communis	pycom12g00300 pycom14g00020
rosa_chinensis	RchiOBHm_Chr3g0497101
rosa_laevigata	RLG00000022481
rosa_multiflora	Rmu_ssc0000003.1_g000006
rosa_roxburghii	Rroxscaffold_6G00388400
rosa_rugosa	Rorug03G0289600 Rorug03G0289700 Rorug03G0289800 Rorug03G0289900 Rorug03G0290000 Rorug03G0290100 Rorug03G0290100 Rorug03G0290200
rosa_samantha	Rh3AG334100 Rh3BG371200 Rh3CG368200 Rh3DG369200
rosa_wichuraiana	Rw3G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	152
AclWI	GGATC	1 cut(s)	437
AdeI	CACNNNGTG	1 cut(s)	484
AfaI	GTAC	5 cut(s)	33, 56, 166, 228, 264
AluBI	AGCT	8 cut(s)	21, 83, 115, 176, 299, 359, 413, 493
AluI	AGCT	8 cut(s)	21, 83, 115, 176, 299, 359, 413, 493
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	437
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	403, 450
BbsI	GAAGAC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	469
BfmI	CTRYAG	3 cut(s)	78, 414, 468
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmcAI	AGTACT	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	164
Bse1I	ACTGG	3 cut(s)	330, 377, 461
Bse3DI	GCAATG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	134, 369
BseNI	ACTGG	3 cut(s)	330, 377, 461
BseXI	GCAGC	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	189
BsiEI	CGRYCG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	2 cut(s)	133, 368
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	3 cut(s)	330, 377, 461
BssMI	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
Bst4CI	ACNGT	1 cut(s)	36
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	113, 117, 495
BstDEI	CTNAG	2 cut(s)	120, 355
BstF5I	GGATG	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	6 cut(s)	88, 244, 283, 384, 445, 504
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 410
BstSFI	CTRYAG	3 cut(s)	78, 414, 468
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	2 cut(s)	75, 146
BtsIMutI	CAGTG	2 cut(s)	75, 146
Cac8I	GCNNGC	3 cut(s)	113, 117, 495
CfoI	GCGC	1 cut(s)	153
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	5 cut(s)	32, 55, 165, 227, 263
CviQI	GTAC	5 cut(s)	32, 55, 165, 227, 263
DdeI	CTNAG	2 cut(s)	120, 355
DpnI	GATC	6 cut(s)	87, 243, 282, 383, 444, 503
DpnII	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
DraIII	CACNNNGTG	1 cut(s)	484
FaiI	YATR	5 cut(s)	18, 315, 416, 431, 433
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 165, 197
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	81
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	189
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	1 cut(s)	487
HphI	GGTGA	2 cut(s)	403, 450
Hpy188I	TCNGA	5 cut(s)	10, 123, 241, 306, 447
Hpy188III	TCNNGA	1 cut(s)	337
Hpy99I	CGWCG	2 cut(s)	74, 281
HpyAV	CCTTC	2 cut(s)	191, 334
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	80, 111, 209, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 410
HpyF3I	CTNAG	2 cut(s)	120, 355
HpySE526I	ACGT	1 cut(s)	163
HspAI	GCGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	8 cut(s)	7, 101, 273, 343, 350, 358, 362, 474
Lsp1109I	GCAGC	1 cut(s)	92
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	4 cut(s)	73, 125, 317, 456
MalI	GATC	6 cut(s)	87, 243, 282, 383, 444, 503
MboI	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
MboII	GAAGA	1 cut(s)	437
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	3 cut(s)	149, 364, 387
MseI	TTAA	2 cut(s)	509, 538
MspA1I	CMGCKG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	89, 410
NdeII	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
NmuCI	GTSAC	3 cut(s)	73, 317, 456
NsbI	TGCGCA	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	82
Ple19I	CGATCG	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	442
PvuI	CGATCG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	5 cut(s)	33, 56, 166, 228, 264
RsaNI	GTAC	5 cut(s)	32, 55, 165, 227, 263
SaqAI	TTAA	2 cut(s)	509, 538
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	6 cut(s)	85, 241, 280, 381, 442, 501
ScaI	AGTACT	1 cut(s)	33
SfcI	CTRYAG	3 cut(s)	78, 414, 468
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	4 cut(s)	26, 244, 279, 384
TasI	AATT	1 cut(s)	510
TatI	WGTACW	2 cut(s)	31, 54
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	2 cut(s)	509, 538
Tru9I	TTAA	2 cut(s)	509, 538
TscAI	CASTG	2 cut(s)	82, 153
TseFI	GTSAC	3 cut(s)	73, 317, 456
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	3 cut(s)	73, 317, 456
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	82, 153
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.