Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003303

Physical Location & Seq

Genomic Coordinates Forward (+)

46684483 .. 46689036

Gene Structure 4554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG368200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAACGCTTTAGTAGCAACAAACAGAAATTTTAAGTTGGCTGCTCGACTGTTGGGATTGGACTCGAAGCTTGAACAGAGTTTACTCATACCATTTAGGGAAATCAAGGTCGAGTGCACTATCCCCAAAGATGATGGCAGTTTGGCTTCATATGTTGGCTTCAGAATTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGCATCAGATATCACCCAGAGGTTGAGCCAGACGAGGTGAATGCCTTAGCACAGCTGATGACATGGAAGACGGCGGTAGCTAACATCCCATATGGTGGTGCCAAGGGTGGGATAGGATGTGATCCAGGGAAGCTCAGTGTTTCAGAGCTTGAGAGACTCACCAGAGTTTTCACCCAAAAGATTCATGATCTTATTGGAATCCACACTGATGTTCCAGCACCAGATATGGGCACTGGTCCACAGACCATGGCTTGGATACTTGATGAGTACTCCAAATTCCATGGCTACTCACCTGCAGTTGTCACTGGGAAACCTACTGATCTTGGTGGATCATTGGGAAGAGATGCAGCAACTGGAAGAGGAGTACTTTTTGCAACAGAGGCTTTACTGAATGAGTATGGGAAGACCATCTCCGGACAACGCTTTGTTATACAGGGATTTGGGAATGTGGGATCCTGGGCTGCCCAACTCATTCATGAGAAAGGTGGGAAAATAGTTGCAGTGAGTGACATCAGTGGAGCTATAAAGAACAGCCAAGGACTTGACATTCCAAGCCTACTCAACCATGTCAAGGAACAAAGAGGTGTCAAGGGCTTCCATGGCGGGGAGTCCATACAAGATTCCCACTCAATTTTAACTGAAGACTGTGACATTCTCATTCCTGCAGCACTTGGAGGTGTCATCAACAGGGAAAATGCAAATGATATAAAAGCCAAATTTATTATCGAAGCAGCTAATCATCCCACTGACCCCGAAGCGGATGAGATCTTGTCAAAGAAAGGTGTTGTTATTCTTCCTGATATATATGCAAACTCTGGAGGAGTCACTGTTAGTTACTTCGAATGGGTGCAGGTAGTTATATCCAATCATATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

359

Amino Acids

38.56

Weight (kDa)

5.95

Isoelectric Point (pI)

25.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 159	2.3e-50	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
ELFV_dehydrog	PF00208	176 - 352	4.1e-64	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03910 AT3G03910 AT5G18170
fragaria_vesca	FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120
malus_domestica	MD12G1003600.v1.1 MD14G1002500.v1.1
prunus_persica	Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1
pyrus_communis	pycom12g00300 pycom14g00020
rosa_chinensis	RchiOBHm_Chr3g0497101
rosa_laevigata	RLG00000022481
rosa_multiflora	Rmu_ssc0000003.1_g000006
rosa_roxburghii	Rroxscaffold_6G00388400
rosa_rugosa	Rorug03G0289600 Rorug03G0289700 Rorug03G0289800 Rorug03G0289900 Rorug03G0290000 Rorug03G0290100 Rorug03G0290100 Rorug03G0290200
rosa_samantha	Rh3AG334100 Rh3BG371200 Rh3CG368200 Rh3DG369200
rosa_wichuraiana	Rw3G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	502
Acc36I	ACCTGC	2 cut(s)	502, 1042
AccB1I	GGYRCC	1 cut(s)	299
AccB7I	CCANNNNNTGG	2 cut(s)	296, 453
AccIII	TCCGGA	1 cut(s)	614
AciI	CCGC	3 cut(s)	275, 804, 959
AclWI	GGATC	4 cut(s)	317, 538, 648, 661
AcsI	RAATTY	4 cut(s)	28, 165, 476, 917
AcuI	CTGAAG	2 cut(s)	145, 861
AfaI	GTAC	2 cut(s)	470, 567
AfiI	CCNNNNNNNGG	9 cut(s)	196, 197, 296, 309, 428, 453, 772, 805, 958
AgsI	TTSAA	2 cut(s)	74, 170
AjnI	CCWGG	2 cut(s)	325, 656
AluBI	AGCT	7 cut(s)	70, 256, 281, 334, 349, 722, 935
AluI	AGCT	7 cut(s)	70, 256, 281, 334, 349, 722, 935
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	115
AlwI	GGATC	4 cut(s)	317, 538, 648, 661
AlwNI	CAGNNNCTG	1 cut(s)	554
Aor13HI	TCCGGA	1 cut(s)	614
AoxI	GGCC	1 cut(s)	187
ApaLI	GTGCAC	1 cut(s)	115
ApeKI	GCWGC	5 cut(s)	41, 548, 662, 866, 932
ApoI	RAATTY	4 cut(s)	28, 165, 476, 917
AspS9I	GGNCC	2 cut(s)	188, 437
AsuHPI	GGTGA	5 cut(s)	206, 250, 352, 364, 483
AsuII	TTCGAA	1 cut(s)	1041
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	2 cut(s)	119, 434
BamHI	GGATCC	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	299
BbsI	GAAGAC	3 cut(s)	275, 611, 849
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	5 cut(s)	28, 560, 649, 878, 944
BccI	CCATC	2 cut(s)	128, 617
BceAI	ACGGC	1 cut(s)	288
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	2 cut(s)	327, 658
BciVI	GTATCC	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	2 cut(s)	495, 864
BfuAI	ACCTGC	2 cut(s)	502, 1042
BfuI	GTATCC	1 cut(s)	450
BglII	AGATCT	1 cut(s)	966
BisI	GCNGC	5 cut(s)	42, 549, 663, 867, 933
BlsI	GCNGC	5 cut(s)	43, 550, 664, 868, 934
BmcAI	AGTACT	2 cut(s)	470, 567
Bme1390I	CCNGG	2 cut(s)	327, 658
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	188, 437
BmiI	GGNNCC	3 cut(s)	190, 301, 655
BmrFI	CCNGG	2 cut(s)	327, 658
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	2 cut(s)	213, 535
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	3 cut(s)	275, 611, 849
BpmI	CTGGAG	1 cut(s)	1038
Bpu10I	CCTNAGC	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	1041
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	7 cut(s)	303, 326, 447, 481, 657, 736, 799
BsaWI	WCCGGW	1 cut(s)	614
BsaXI	ACNNNNNCTCC	2 cut(s)	1014, 1044
Bsc4I	CCNNNNNNNGG	9 cut(s)	196, 197, 296, 309, 428, 453, 772, 805, 958
Bse1I	ACTGG	3 cut(s)	439, 511, 559
BseAI	TCCGGA	1 cut(s)	614
BseBI	CCWGG	2 cut(s)	327, 658
BseDI	CCNNGG	7 cut(s)	303, 326, 447, 481, 657, 736, 799
BseGI	GGATG	4 cut(s)	285, 323, 940, 967
BseLI	CCNNNNNNNGG	9 cut(s)	196, 197, 296, 309, 428, 453, 772, 805, 958
BseMII	CTCAG	1 cut(s)	349
BseNI	ACTGG	3 cut(s)	439, 511, 559
BseRI	GAGGAG	2 cut(s)	576, 1035
BseSI	GKGCMC	2 cut(s)	119, 434
BseXI	GCAGC	5 cut(s)	28, 560, 649, 878, 944
BsgI	GTGCAG	1 cut(s)	1070
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	615
BslI	CCNNNNNNNGG	9 cut(s)	196, 197, 296, 309, 428, 453, 772, 805, 958
BsmAI	GTCTC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	189
Bsp119I	TTCGAA	1 cut(s)	1041
Bsp1286I	GDGCHC	2 cut(s)	119, 434
Bsp13I	TCCGGA	1 cut(s)	614
Bsp143I	GATC	6 cut(s)	322, 388, 520, 530, 653, 966
Bsp19I	CCATGG	3 cut(s)	447, 481, 799
BspACI	CCGC	3 cut(s)	275, 804, 959
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	348
BspEI	TCCGGA	1 cut(s)	614
BspHI	TCATGA	2 cut(s)	385, 676
BspLI	GGNNCC	3 cut(s)	190, 301, 655
BspMAI	CTGCAG	2 cut(s)	499, 868
BspMI	ACCTGC	2 cut(s)	502, 1042
BspPI	GGATC	4 cut(s)	317, 538, 648, 661
BspT104I	TTCGAA	1 cut(s)	1041
BspT107I	GGYRCC	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	439, 511, 559
BssECI	CCNNGG	7 cut(s)	303, 326, 447, 481, 657, 736, 799
BssMI	GATC	6 cut(s)	322, 388, 520, 530, 653, 966
BssT1I	CCWWGG	5 cut(s)	303, 447, 481, 736, 799
Bst2UI	CCWGG	2 cut(s)	327, 658
Bst4CI	ACNGT	3 cut(s)	51, 848, 1030
Bst6I	CTCTTC	2 cut(s)	535, 553
BstBI	TTCGAA	1 cut(s)	1041
BstDEI	CTNAG	2 cut(s)	247, 335
BstDSI	CCRYGG	3 cut(s)	447, 481, 799
BstF5I	GGATG	4 cut(s)	285, 323, 940, 967
BstKTI	GATC	6 cut(s)	325, 391, 523, 533, 656, 969
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	6 cut(s)	322, 388, 520, 530, 653, 966
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 581, 801
BstNI	CCWGG	2 cut(s)	327, 658
BstSCI	CCNGG	2 cut(s)	325, 656
BstSFI	CTRYAG	2 cut(s)	495, 864
BstSLI	GKGCMC	2 cut(s)	119, 434
BstV1I	GCAGC	5 cut(s)	28, 560, 649, 878, 944
BstV2I	GAAGAC	3 cut(s)	275, 611, 849
BstX2I	RGATCY	2 cut(s)	653, 966
BstYI	RGATCY	2 cut(s)	653, 966
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	3 cut(s)	447, 481, 799
BtsCI	GGATG	4 cut(s)	285, 323, 940, 967
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	8 cut(s)	343, 405, 432, 504, 708, 721, 945, 1026
BveI	ACCTGC	2 cut(s)	502, 1042
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	2 cut(s)	385, 676
Cfr13I	GGNCC	2 cut(s)	188, 437
Csp6I	GTAC	2 cut(s)	469, 566
CviAII	CATG	9 cut(s)	173, 193, 264, 386, 448, 482, 677, 767, 800
CviQI	GTAC	2 cut(s)	469, 566
DdeI	CTNAG	2 cut(s)	247, 335
DpnI	GATC	6 cut(s)	324, 390, 522, 532, 655, 968
DpnII	GATC	6 cut(s)	322, 388, 520, 530, 653, 966
Eam1104I	CTCTTC	2 cut(s)	535, 553
EarI	CTCTTC	2 cut(s)	535, 553
Eco130I	CCWWGG	5 cut(s)	303, 447, 481, 736, 799
Eco32I	GATATC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	2 cut(s)	145, 861
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	325, 656
EcoRV	GATATC	1 cut(s)	212
EcoT14I	CCWWGG	5 cut(s)	303, 447, 481, 736, 799
ErhI	CCWWGG	5 cut(s)	303, 447, 481, 736, 799
FaeI	CATG	9 cut(s)	176, 196, 267, 389, 451, 485, 680, 770, 803
FatI	CATG	9 cut(s)	172, 192, 263, 385, 447, 481, 676, 766, 799
FauI	CCCGC	1 cut(s)	797
FauNDI	CATATG	2 cut(s)	151, 292
Fnu4HI	GCNGC	5 cut(s)	42, 549, 663, 867, 933
FokI	GGATG	4 cut(s)	272, 330, 927, 974
Fsp4HI	GCNGC	5 cut(s)	42, 549, 663, 867, 933
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	5 cut(s)	42, 549, 663, 867, 933
GsuI	CTGGAG	1 cut(s)	1038
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	615
Hin1II	CATG	9 cut(s)	176, 196, 267, 389, 451, 485, 680, 770, 803
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	7 cut(s)	62, 357, 382, 399, 809, 821, 1023
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	5 cut(s)	206, 250, 352, 364, 483
Hpy166II	GTNNAC	3 cut(s)	83, 117, 440
Hpy188I	TCNGA	3 cut(s)	164, 209, 346
Hpy188III	TCNNGA	5 cut(s)	386, 615, 677, 998, 1017
Hpy8I	GTNNAC	3 cut(s)	83, 117, 440
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	3 cut(s)	51, 848, 1030
HpyCH4V	TGCA	9 cut(s)	117, 497, 548, 575, 701, 866, 899, 1010, 1051
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 581, 801
HpyF3I	CTNAG	2 cut(s)	247, 335
Hsp92II	CATG	9 cut(s)	176, 196, 267, 389, 451, 485, 680, 770, 803
Kpn2I	TCCGGA	1 cut(s)	614
Kzo9I	GATC	6 cut(s)	322, 388, 520, 530, 653, 966
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	5 cut(s)	28, 560, 649, 878, 944
LweI	GCATC	2 cut(s)	213, 535
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	5 cut(s)	502, 707, 848, 1024, 1034
MalI	GATC	6 cut(s)	324, 390, 522, 532, 655, 968
MboI	GATC	6 cut(s)	322, 388, 520, 530, 653, 966
MboII	GAAGA	6 cut(s)	280, 552, 570, 616, 854, 986
MflI	RGATCY	2 cut(s)	653, 966
MhlI	GDGCHC	2 cut(s)	119, 434
MluCI	AATT	5 cut(s)	28, 165, 476, 831, 917
MlyI	GAGTC	4 cut(s)	56, 351, 818, 1032
MnlI	CCTC	9 cut(s)	179, 194, 214, 229, 554, 574, 776, 869, 1013
MroI	TCCGGA	1 cut(s)	614
MseI	TTAA	2 cut(s)	33, 836
MslI	CAYNNNNRTG	2 cut(s)	177, 408
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	2 cut(s)	327, 658
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	2 cut(s)	327, 658
MwoI	GCNNNNNNNGC	3 cut(s)	14, 581, 801
NcoI	CCATGG	3 cut(s)	447, 481, 799
NdeI	CATATG	2 cut(s)	151, 292
NdeII	GATC	6 cut(s)	322, 388, 520, 530, 653, 966
NlaIII	CATG	9 cut(s)	176, 196, 267, 389, 451, 485, 680, 770, 803
NlaIV	GGNNCC	3 cut(s)	190, 301, 655
NmuCI	GTSAC	4 cut(s)	502, 707, 848, 1024
NspV	TTCGAA	1 cut(s)	1041
PagI	TCATGA	2 cut(s)	385, 676
PaqCI	CACCTGC	1 cut(s)	502
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	382, 399, 821
PflMI	CCANNNNNTGG	2 cut(s)	296, 453
PkrI	GCNGC	5 cut(s)	43, 550, 664, 868, 934
PleI	GAGTC	4 cut(s)	56, 351, 817, 1031
PpsI	GAGTC	4 cut(s)	56, 351, 817, 1031
Psp6I	CCWGG	2 cut(s)	325, 656
PspGI	CCWGG	2 cut(s)	325, 656
PspN4I	GGNNCC	3 cut(s)	190, 301, 655
PspPI	GGNCC	2 cut(s)	188, 437
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
PstI	CTGCAG	2 cut(s)	499, 868
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	2 cut(s)	653, 966
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	2 cut(s)	470, 567
RsaNI	GTAC	2 cut(s)	469, 566
RseI	CAYNNNNRTG	2 cut(s)	177, 408
SaqAI	TTAA	2 cut(s)	33, 836
SatI	GCNGC	5 cut(s)	42, 549, 663, 867, 933
Sau3AI	GATC	6 cut(s)	322, 388, 520, 530, 653, 966
Sau96I	GGNCC	2 cut(s)	188, 437
ScaI	AGTACT	2 cut(s)	470, 567
SchI	GAGTC	4 cut(s)	56, 351, 818, 1032
ScrFI	CCNGG	2 cut(s)	327, 658
SduI	GDGCHC	2 cut(s)	119, 434
SfaNI	GCATC	2 cut(s)	213, 535
SfcI	CTRYAG	2 cut(s)	495, 864
SfuI	TTCGAA	1 cut(s)	1041
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	177, 408
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	5 cut(s)	28, 165, 476, 831, 917
SsiI	CCGC	3 cut(s)	275, 804, 959
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	325, 656
StyI	CCWWGG	5 cut(s)	303, 447, 481, 736, 799
TaaI	ACNGT	3 cut(s)	51, 848, 1030
TaqI	TCGA	5 cut(s)	46, 65, 111, 927, 1041
TasI	AATT	5 cut(s)	28, 165, 476, 831, 917
TatI	WGTACW	2 cut(s)	468, 565
TfiI	GAWTC	3 cut(s)	382, 399, 821
Tru1I	TTAA	2 cut(s)	33, 836
Tru9I	TTAA	2 cut(s)	33, 836
TscAI	CASTG	8 cut(s)	343, 412, 439, 511, 708, 721, 952, 1033
TseFI	GTSAC	4 cut(s)	502, 707, 848, 1024
TseI	GCWGC	5 cut(s)	41, 548, 662, 866, 932
Tsp45I	GTSAC	4 cut(s)	502, 707, 848, 1024
TspDTI	ATGAA	6 cut(s)	17, 138, 209, 374, 665, 1064
TspRI	CASTG	8 cut(s)	343, 412, 439, 511, 708, 721, 952, 1033
Van91I	CCANNNNNTGG	2 cut(s)	296, 453
VneI	GTGCAC	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	4 cut(s)	28, 165, 476, 917
XspI	CTAG	1 cut(s)	183
ZrmI	AGTACT	2 cut(s)	470, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.