pycom14g00020

Belongs to the Glu Leu Phe Val dehydrogenases family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
18547 .. 21082
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g00020.7

Sequence Viewer

Length: 1236 bp
ATGAATGCATTAGTGGCAACCAACAGAAATTTTAAGTTGGCTGCTCGGCTTTTGGGATTGGACTCCAAGCTTGAGAAAAGTTTACTGATACCATTTAGGGAAATCAAGGTTGAGTGTACTATACCGAAAGACGATGGCAGTTTGGCTTCATTCGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCTATGAAGGGAGGAATCAGATATCACCCAGAGATCGATCCAGATGAGGTGAATGCTTTAGCACAGCTCATGACATGGAAGACCGCGGTAGCCAACATCCCGTATGGTGGTGCCAAAGGGGGTATAGGATGTGATCCAGGGAAGTTGAGTATTTCTGAACTAGAACGACTTACCAGAGTATTCACACAAAAGATACACGATCTTATCGGAATCCACACCGATGTTCCAGCACCGGATATGGGGACAGGTCCACAGACCATGGCATGGATACTAGTTGAGTACTCAAAGTTTCATGGCTACTCACCTGCAGTAGTGACTGGAAAGCCTATTGATCTTGGTGGATCACTAGGAAGAGATGCAGCAACGGGAAGAGGAATACTTTTTGCAACAGAGGCATTACTCAATGAGTATGGAAAGAGCATCTCCGGACAACAGTTTGTTATACAGGGTTTTGGGAATGTAGGCTCGTGGGCGGCCCAGCTCATCCATGAGGGTGGTGGCAAAATAGTTGCAGTGAGTGACATCACTGGAGCCCTAAAGAACAGCGAAGGACTTGACATTCCAAGCCTGCTCAAGCATGTCAAAGACAACAGGGGAGTCAAGGGCTTCCATGGTGGGGATCCAATAGAACCCAGCTCAATCTTGGTTGAAGATTGTGACATTCTCATTCCAGCAGCCCTCGGAGGTGTCATCAACAAGGAAAACGCAAATGACATAAAAGCTAAATTTATAATCGAAGCGGCTAATCATCCTACTGACCCTGAGGCTGATGAGATCCTGTCAAAGAAAGGTGTTGTAATTCTTCCTGATATATATGCAAACTCTGGAGGAGTTACTGTTAGTTACCTTGAGTGGGTGCAGAACATTCAAGGATTCTTGTGGGATGAAGAGAAGGTGAACAATGAGCTCAGGACTTACATGACCAAAGGCTTCAAAGGTGTGAAGGAGATGTGCAAAACCCATAACTGCGATCTCCGGATGGGAGCCTTCACGCTCGGAGTTAACCGCGTTGCAAGGGCGACTGTCCTCAGAGGGTGGGAAGCCTGA

Protein Analysis

412

Amino Acids

44.34

Weight (kDa)

6.23

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 920
AarI CACCTGC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 453
AccII CGCG 2 cut(s) 275, 1197
AccIII TCCGGA 2 cut(s) 614, 1164
AciI CCGC 5 cut(s) 273, 275, 662, 929, 1195
AclWI GGATC 6 cut(s) 221, 317, 538, 803, 816, 958
AcsI RAATTY 2 cut(s) 28, 914
AcuI CTGAAG 1 cut(s) 145
AfaI GTAC 2 cut(s) 118, 470
AfiI CCNNNNNNNGG 7 cut(s) 196, 197, 296, 428, 453, 805, 1042
AgsI TTSAA 4 cut(s) 170, 839, 1058, 1123
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 6 cut(s) 70, 256, 670, 825, 911, 1096
AluI AGCT 6 cut(s) 70, 256, 670, 825, 911, 1096
Alw21I GWGCWC 1 cut(s) 1098
AlwI GGATC 6 cut(s) 221, 317, 538, 803, 816, 958
Aor13HI TCCGGA 2 cut(s) 614, 1164
AoxI GGCC 2 cut(s) 187, 663
ApeKI GCWGC 3 cut(s) 41, 548, 863
ApoI RAATTY 2 cut(s) 28, 914
AspS9I GGNCC 3 cut(s) 188, 437, 664
AsuHPI GGTGA 4 cut(s) 206, 250, 483, 1096
AvaII GGWCC 1 cut(s) 437
AxyI CCTNAGG 1 cut(s) 951
BamHI GGATCC 1 cut(s) 808
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 724, 1098
BauI CACGAG 1 cut(s) 655
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 1098
BbvI GCAGC 3 cut(s) 28, 560, 875
BccI CCATC 2 cut(s) 128, 1162
BciT130I CCWGG 1 cut(s) 327
BciVI GTATCC 1 cut(s) 450
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 4 cut(s) 183, 350, 461, 536
BfmI CTRYAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 502
BfuI GTATCC 1 cut(s) 450
BisI GCNGC 5 cut(s) 42, 549, 663, 864, 930
BlsI GCNGC 5 cut(s) 43, 550, 664, 865, 931
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 3 cut(s) 188, 437, 664
BmiI GGNNCC 4 cut(s) 301, 721, 810, 1174
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 535, 618
BpiI GAAGAC 1 cut(s) 275
BpmI CTGGAG 2 cut(s) 738, 1035
Bpu10I CCTNAGC 1 cut(s) 1097
BpuEI CTTGAG 3 cut(s) 92, 746, 1058
Bsa29I ATCGAT 1 cut(s) 225
BsaJI CCNNGG 5 cut(s) 273, 326, 447, 799, 868
BsaWI WCCGGW 3 cut(s) 421, 614, 1164
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 7 cut(s) 196, 197, 296, 428, 453, 805, 1042
Bse1I ACTGG 2 cut(s) 511, 721
Bse21I CCTNAGG 1 cut(s) 951
BseAI TCCGGA 2 cut(s) 614, 1164
BseBI CCWGG 1 cut(s) 327
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 5 cut(s) 273, 326, 447, 799, 868
BseGI GGATG 6 cut(s) 285, 323, 672, 937, 1078, 1173
BseLI CCNNNNNNNGG 7 cut(s) 196, 197, 296, 428, 453, 805, 1042
BseMII CTCAG 3 cut(s) 942, 1111, 1231
BseNI ACTGG 2 cut(s) 511, 721
BseRI GAGGAG 1 cut(s) 1032
BseXI GCAGC 3 cut(s) 28, 560, 875
BseYI CCCAGC 2 cut(s) 666, 821
BsgI GTGCAG 1 cut(s) 1067
Bsh1236I CGCG 2 cut(s) 275, 1197
BshFI GGCC 2 cut(s) 189, 665
BshNI GGYRCC 1 cut(s) 299
BshVI ATCGAT 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 1098
BsiSI CCGG 3 cut(s) 422, 615, 1165
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 7 cut(s) 196, 197, 296, 428, 453, 805, 1042
BsmFI GGGAC 1 cut(s) 445
BsmI GAATGC 2 cut(s) 10, 247
BsnI GGCC 2 cut(s) 189, 665
Bsp1286I GDGCHC 2 cut(s) 724, 1098
Bsp13I TCCGGA 2 cut(s) 614, 1164
Bsp143I GATC 9 cut(s) 222, 226, 322, 388, 520, 530, 808, 963, 1159
Bsp19I CCATGG 2 cut(s) 447, 799
BspACI CCGC 5 cut(s) 273, 275, 662, 929, 1195
BspANI GGCC 2 cut(s) 189, 665
BspCNI CTCAG 3 cut(s) 943, 1110, 1230
BspDI ATCGAT 1 cut(s) 225
BspEI TCCGGA 2 cut(s) 614, 1164
BspFNI CGCG 2 cut(s) 275, 1197
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 4 cut(s) 301, 721, 810, 1174
BspMAI CTGCAG 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 6 cut(s) 221, 317, 538, 803, 816, 958
BspT107I GGYRCC 1 cut(s) 299
BsrI ACTGG 2 cut(s) 511, 721
BssECI CCNNGG 5 cut(s) 273, 326, 447, 799, 868
BssMI GATC 9 cut(s) 222, 226, 322, 388, 520, 530, 808, 963, 1159
BssSI CACGAG 1 cut(s) 655
BssT1I CCWWGG 2 cut(s) 447, 799
Bst2BI CACGAG 1 cut(s) 655
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 3 cut(s) 624, 1027, 1213
Bst6I CTCTTC 3 cut(s) 535, 553, 1071
BstC8I GCNNGC 1 cut(s) 758
BstDEI CTNAG 3 cut(s) 951, 1097, 1217
BstDSI CCRYGG 3 cut(s) 273, 447, 799
BstF5I GGATG 6 cut(s) 285, 323, 672, 937, 1078, 1173
BstFNI CGCG 2 cut(s) 275, 1197
BstKTI GATC 9 cut(s) 225, 229, 325, 391, 523, 533, 811, 966, 1162
BstMBI GATC 9 cut(s) 222, 226, 322, 388, 520, 530, 808, 963, 1159
BstMWI GCNNNNNNNGC 2 cut(s) 14, 581
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 1 cut(s) 325
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 2 cut(s) 275, 1197
BstV1I GCAGC 3 cut(s) 28, 560, 875
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 2 cut(s) 808, 963
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 2 cut(s) 808, 963
Bsu15I ATCGAT 1 cut(s) 225
Bsu36I CCTNAGG 1 cut(s) 951
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 2 cut(s) 189, 665
BsuTUI ATCGAT 1 cut(s) 225
BtgI CCRYGG 3 cut(s) 273, 447, 799
BtsCI GGATG 6 cut(s) 285, 323, 672, 937, 1078, 1173
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 708, 714
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 758
CciI TCATGA 1 cut(s) 258
Cfr13I GGNCC 3 cut(s) 188, 437, 664
Cfr42I CCGCGG 1 cut(s) 276
ClaI ATCGAT 1 cut(s) 225
Csp6I GTAC 2 cut(s) 117, 469
CviQI GTAC 2 cut(s) 117, 469
DdeI CTNAG 3 cut(s) 951, 1097, 1217
DpnI GATC 9 cut(s) 224, 228, 324, 390, 522, 532, 810, 965, 1161
DpnII GATC 9 cut(s) 222, 226, 322, 388, 520, 530, 808, 963, 1159
Eam1104I CTCTTC 3 cut(s) 535, 553, 1071
EarI CTCTTC 3 cut(s) 535, 553, 1071
Ecl136II GAGCTC 1 cut(s) 1096
Eco130I CCWWGG 2 cut(s) 447, 799
Eco24I GRGCYC 2 cut(s) 724, 1098
Eco32I GATATC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 1096
Eco57I CTGAAG 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 951
EcoICRI GAGCTC 1 cut(s) 1096
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 325
EcoRV GATATC 1 cut(s) 212
EcoT14I CCWWGG 2 cut(s) 447, 799
EcoT22I ATGCAT 1 cut(s) 10
EcoT38I GRGCYC 2 cut(s) 724, 1098
ErhI CCWWGG 2 cut(s) 447, 799
FaqI GGGAC 1 cut(s) 445
Fnu4HI GCNGC 5 cut(s) 42, 549, 663, 864, 930
FokI GGATG 6 cut(s) 272, 330, 659, 924, 1085, 1180
FriOI GRGCYC 2 cut(s) 724, 1098
Fsp4HI GCNGC 5 cut(s) 42, 549, 663, 864, 930
FspBI CTAG 4 cut(s) 183, 350, 461, 536
GluI GCNGC 5 cut(s) 42, 549, 663, 864, 930
GsaI CCCAGC 2 cut(s) 670, 825
GsuI CTGGAG 2 cut(s) 738, 1035
HaeIII GGCC 2 cut(s) 189, 665
HapII CCGG 3 cut(s) 422, 615, 1165
HincII GTYRAC 1 cut(s) 1192
HindII GTYRAC 1 cut(s) 1192
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 5 cut(s) 62, 204, 399, 786, 1062
HpaI GTTAAC 1 cut(s) 1192
HpaII CCGG 3 cut(s) 422, 615, 1165
HphI GGTGA 4 cut(s) 206, 250, 483, 1096
Hpy166II GTNNAC 5 cut(s) 83, 117, 440, 1087, 1192
Hpy188I TCNGA 6 cut(s) 209, 346, 398, 872, 1187, 1220
Hpy188III TCNNGA 7 cut(s) 230, 259, 615, 995, 1014, 1099, 1165
Hpy8I GTNNAC 5 cut(s) 83, 117, 440, 1087, 1192
HpyAV CCTTC 5 cut(s) 190, 731, 1075, 1126, 1186
HpyCH4III ACNGT 3 cut(s) 624, 1027, 1213
HpyCH4V TGCA 9 cut(s) 8, 497, 548, 575, 701, 1007, 1048, 1143, 1202
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 581
HpyF3I CTNAG 3 cut(s) 951, 1097, 1217
Kpn2I TCCGGA 2 cut(s) 614, 1164
KspAI GTTAAC 1 cut(s) 1192
KspI CCGCGG 1 cut(s) 276
Kzo9I GATC 9 cut(s) 222, 226, 322, 388, 520, 530, 808, 963, 1159
LmnI GCTCC 2 cut(s) 719, 1172
Lsp1109I GCAGC 3 cut(s) 28, 560, 875
LweI GCATC 2 cut(s) 535, 618
MaeI CTAG 4 cut(s) 183, 350, 461, 536
MaeIII GTNAC 5 cut(s) 502, 707, 845, 1021, 1031
MalI GATC 9 cut(s) 224, 228, 324, 390, 522, 532, 810, 965, 1161
MboI GATC 9 cut(s) 222, 226, 322, 388, 520, 530, 808, 963, 1159
MboII GAAGA 6 cut(s) 280, 552, 570, 851, 983, 1088
MflI RGATCY 2 cut(s) 808, 963
MhlI GDGCHC 2 cut(s) 724, 1098
MluCI AATT 3 cut(s) 28, 914, 987
MlyI GAGTC 2 cut(s) 56, 795
Mph1103I ATGCAT 1 cut(s) 10
MroI TCCGGA 2 cut(s) 614, 1164
MseI TTAA 2 cut(s) 33, 1191
MslI CAYNNNNRTG 3 cut(s) 177, 408, 681
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 3 cut(s) 422, 615, 1165
MspR9I CCNGG 1 cut(s) 327
Mva1269I GAATGC 2 cut(s) 10, 247
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 2 cut(s) 275, 1197
MwoI GCNNNNNNNGC 2 cut(s) 14, 581
NcoI CCATGG 2 cut(s) 447, 799
NdeII GATC 9 cut(s) 222, 226, 322, 388, 520, 530, 808, 963, 1159
NlaIV GGNNCC 4 cut(s) 301, 721, 810, 1174
NmeAIII GCCGAG 1 cut(s) 25
NmuCI GTSAC 3 cut(s) 502, 707, 845
NsiI ATGCAT 1 cut(s) 10
NspI RCATGY 1 cut(s) 770
PagI TCATGA 1 cut(s) 258
PaqCI CACCTGC 1 cut(s) 502
PctI GAATGC 2 cut(s) 10, 247
PfeI GAWTC 3 cut(s) 204, 399, 1062
PflMI CCANNNNNTGG 1 cut(s) 453
PkrI GCNGC 5 cut(s) 43, 550, 664, 865, 931
PleI GAGTC 2 cut(s) 56, 794
PpsI GAGTC 2 cut(s) 56, 794
PsiI TTATAA 1 cut(s) 920
Psp124BI GAGCTC 1 cut(s) 1098
Psp6I CCWGG 1 cut(s) 325
PspFI CCCAGC 2 cut(s) 666, 821
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 4 cut(s) 301, 721, 810, 1174
PspPI GGNCC 3 cut(s) 188, 437, 664
PstI CTGCAG 1 cut(s) 499
PsuI RGATCY 2 cut(s) 808, 963
RsaI GTAC 2 cut(s) 118, 470
RsaNI GTAC 2 cut(s) 117, 469
RseI CAYNNNNRTG 3 cut(s) 177, 408, 681
SacI GAGCTC 1 cut(s) 1098
SacII CCGCGG 1 cut(s) 276
SaqAI TTAA 2 cut(s) 33, 1191
SatI GCNGC 5 cut(s) 42, 549, 663, 864, 930
Sau3AI GATC 9 cut(s) 222, 226, 322, 388, 520, 530, 808, 963, 1159
Sau96I GGNCC 3 cut(s) 188, 437, 664
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 2 cut(s) 56, 795
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 724, 1098
SfaNI GCATC 2 cut(s) 535, 618
SfcI CTRYAG 1 cut(s) 495
Sfr303I CCGCGG 1 cut(s) 276
SgrBI CCGCGG 1 cut(s) 276
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 3 cut(s) 177, 408, 681
SmlI CTYRAG 3 cut(s) 71, 761, 1037
SmoI CTYRAG 3 cut(s) 71, 761, 1037
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 3 cut(s) 28, 914, 987
SsiI CCGC 5 cut(s) 273, 275, 662, 929, 1195
SspMI CTAG 4 cut(s) 183, 350, 461, 536
SstI GAGCTC 1 cut(s) 1098
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 2 cut(s) 447, 799
TaaI ACNGT 3 cut(s) 624, 1027, 1213
TaqI TCGA 2 cut(s) 225, 924
TasI AATT 3 cut(s) 28, 914, 987
TatI WGTACW 2 cut(s) 116, 468
TauI GCSGC 2 cut(s) 665, 932
TfiI GAWTC 3 cut(s) 204, 399, 1062
Tru1I TTAA 2 cut(s) 33, 1191
Tru9I TTAA 2 cut(s) 33, 1191
TscAI CASTG 2 cut(s) 708, 721
TseFI GTSAC 3 cut(s) 502, 707, 845
TseI GCWGC 3 cut(s) 41, 548, 863
Tsp45I GTSAC 3 cut(s) 502, 707, 845
TspDTI ATGAA 5 cut(s) 17, 138, 209, 470, 1089
TspRI CASTG 2 cut(s) 708, 721
Van91I CCANNNNNTGG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 2 cut(s) 28, 914
XceI RCATGY 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 2 cut(s) 683, 829
XspI CTAG 4 cut(s) 183, 350, 461, 536
ZrmI AGTACT 1 cut(s) 470
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.