Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003303

Physical Location & Seq

Genomic Coordinates Reverse (-)

29461479 .. 29467675

Gene Structure 6197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0290100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTTGATGACTCGATGCGGTGGAAACAGCAAGAAGGAAGATGAGGGCAGGGTAACAAAGGCGGAACTGGTCGCCGGAGTTGCATCTCATTTTGAGCAGGGTGGCATTCTTGTGCTGGAACCTCAACCATGGAAGTCTTGTGATATAAATCATAAAGTTTCTGAGGCGTCATTGTGTCTCCACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

62

Amino Acids

6.79

Weight (kDa)

6.81

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03910 AT3G03910 AT5G18170
fragaria_vesca	FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120 FvH4_1g28120
malus_domestica	MD12G1003600.v1.1 MD14G1002500.v1.1
prunus_persica	Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1 Prupe.7G004100_v2.0.a1
pyrus_communis	pycom12g00300 pycom14g00020
rosa_chinensis	RchiOBHm_Chr3g0497101
rosa_laevigata	RLG00000022481
rosa_multiflora	Rmu_ssc0000003.1_g000006
rosa_roxburghii	Rroxscaffold_6G00388400
rosa_rugosa	Rorug03G0289600 Rorug03G0289700 Rorug03G0289800 Rorug03G0289900 Rorug03G0290000 Rorug03G0290100 Rorug03G0290100 Rorug03G0290200
rosa_samantha	Rh3AG334100 Rh3BG371200 Rh3CG368200 Rh3DG369200
rosa_wichuraiana	Rw3G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	18, 62, 184
AcyI	GRCGYC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	120
BmsI	GCATC	2 cut(s)	5, 92
BsaBI	GATNNNNATC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	128
BseJI	GATNNNNATC	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	128
BspACI	CCGC	3 cut(s)	18, 62, 184
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	128
CseI	GACGC	1 cut(s)	156
CviAII	CATG	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	1 cut(s)	132
FaiI	YATR	3 cut(s)	130, 146, 153
FatI	CATG	1 cut(s)	128
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	132
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	34, 53, 83, 88, 101
LweI	GCATC	2 cut(s)	5, 92
MaeIII	GTNAC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	3 cut(s)	37, 132, 157
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	128
NlaIII	CATG	1 cut(s)	132
NlaIV	GGNNCC	1 cut(s)	120
PctI	GAATGC	1 cut(s)	105
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	110
SchI	GAGTC	1 cut(s)	4
SetI	ASST	1 cut(s)	124
SfaNI	GCATC	2 cut(s)	5, 92
SmiMI	CAYNNNNRTG	1 cut(s)	110
SsiI	CCGC	3 cut(s)	18, 62, 184
StyI	CCWWGG	1 cut(s)	128
TaqI	TCGA	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.