AT5G19230

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008438
Physical Location & Seq
Forward (+)
6467193 .. 6468848
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19230.1

Sequence Viewer

Length: 570 bp
ATGGCGATTTCCAAACTCCATCTACTCTGTCTTCTCTCAGTCTTTCTCTCCCTTCATCGTCTTGTTCTTTCCGGCACCGATGGAGAAGATGACCTTCTTCTTACAGTATTCAACAAATACAGAACAGGACTAAACCTAAAAACCTTAACAAAGAACGAAAACGCAGAATGTCTCGCAGACGAAGTCGTAGACCAACTAAAGAACCAACCCTGCACAAACACTAATAACTCAGCTCCAGTCCCTGGAAATAACCTCCTCGCTAAATGCAGTCTCAACACAACCGTAGTCAGAGACGGTGTGATCATGCAAGTCTGTTTTCCTAAGCATGATAAGAACCCTGACTTGAGCAATTTCAACAGTGTCGTACTCAAGAACTTGAATGATTCTAAGATCACTGGAATTGGTATTGGTTCTGGTGATATTTGGGTTGTTGTCATCCTCACTACAAACACACCGGAAGGCGGCTATTCTCTTTTAACAACTACTAACTCAGGAGCTTATGCATTCGGAGTTAATGGCCTTGTTTCTTCAAGTTTCTTGTTTCTTCTCTTTTGTTTCTTCATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.51

Weight (kDa)

5.85

Isoelectric Point (pI)

13.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At5g19230 PF25884 31 - 147 3.9e-38 Uncharacterized GPI-anchored protein At5g19230-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccB7I CCANNNNNTGG 1 cut(s) 242
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 462
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 2 cut(s) 242, 461
AgsI TTSAA 4 cut(s) 112, 355, 379, 531
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 2 cut(s) 233, 497
AluI AGCT 2 cut(s) 233, 497
Alw26I GTCTC 3 cut(s) 176, 275, 285
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 1 cut(s) 517
AsuHPI GGTGA 1 cut(s) 428
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 23
BccI CCATC 2 cut(s) 27, 74
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 300
BcoDI GTCTC 3 cut(s) 176, 275, 285
BisI GCNGC 1 cut(s) 463
BlsI GCNGC 1 cut(s) 464
Bme1390I CCNGG 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 353, 364
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 461
Bse1I ACTGG 2 cut(s) 236, 400
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 435
BseLI CCNNNNNNNGG 2 cut(s) 242, 461
BseMII CTCAG 3 cut(s) 51, 243, 504
BseNI ACTGG 2 cut(s) 236, 400
BseRI GAGGAG 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 1 cut(s) 519
BshNI GGYRCC 1 cut(s) 74
BsiSI CCGG 2 cut(s) 72, 455
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 242, 461
BsmAI GTCTC 3 cut(s) 176, 275, 285
BsmBI CGTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 1 cut(s) 519
Bsp143I GATC 2 cut(s) 300, 390
BspACI CCGC 1 cut(s) 462
BspANI GGCC 1 cut(s) 519
BspCNI CTCAG 3 cut(s) 50, 242, 503
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
BsrI ACTGG 2 cut(s) 236, 400
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 300, 390
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 4 cut(s) 106, 283, 296, 359
BstDEI CTNAG 5 cut(s) 37, 229, 321, 387, 490
BstF5I GGATG 1 cut(s) 435
BstKTI GATC 2 cut(s) 303, 393
BstMAI GTCTC 3 cut(s) 176, 275, 285
BstMBI GATC 2 cut(s) 300, 390
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 519
BtsCI GGATG 1 cut(s) 435
BtsIMutI CAGTG 2 cut(s) 364, 393
CaiI CAGNNNCTG 1 cut(s) 242
Csp6I GTAC 1 cut(s) 365
CviAII CATG 3 cut(s) 304, 326, 562
CviJI RGCY 4 cut(s) 233, 465, 497, 519
CviKI_1 RGCY 4 cut(s) 233, 465, 497, 519
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 5 cut(s) 37, 229, 321, 387, 490
DpnI GATC 2 cut(s) 302, 392
DpnII GATC 2 cut(s) 300, 390
EcoRII CCWGG 1 cut(s) 241
EcoT22I ATGCAT 1 cut(s) 505
Esp3I CGTCTC 1 cut(s) 285
FaeI CATG 3 cut(s) 307, 329, 565
FaiI YATR 4 cut(s) 305, 327, 501, 563
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 224
FatI CATG 3 cut(s) 303, 325, 561
FbaI TGATCA 1 cut(s) 300
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 463
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 1 cut(s) 463
GluI GCNGC 1 cut(s) 463
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 519
HapII CCGG 2 cut(s) 72, 455
Hin1II CATG 3 cut(s) 307, 329, 565
HinfI GANTC 1 cut(s) 383
HpaII CCGG 2 cut(s) 72, 455
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 290, 509
Hpy188III TCNNGA 2 cut(s) 370, 492
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 62, 104, 452
HpyCH4III ACNGT 4 cut(s) 106, 283, 296, 359
HpyCH4V TGCA 4 cut(s) 213, 267, 307, 503
HpyF3I CTNAG 5 cut(s) 37, 229, 321, 387, 490
Hsp92II CATG 3 cut(s) 307, 329, 565
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 2 cut(s) 300, 390
LmnI GCTCC 2 cut(s) 238, 494
MalI GATC 2 cut(s) 302, 392
MboI GATC 2 cut(s) 300, 390
MboII GAAGA 6 cut(s) 23, 89, 98, 519, 536, 550
MluCI AATT 2 cut(s) 349, 399
MnlI CCTC 3 cut(s) 263, 266, 449
Mph1103I ATGCAT 1 cut(s) 505
MseI TTAA 3 cut(s) 146, 476, 513
MspI CCGG 2 cut(s) 72, 455
MspR9I CCNGG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 1 cut(s) 243
NdeII GATC 2 cut(s) 300, 390
NlaIII CATG 3 cut(s) 307, 329, 565
NlaIV GGNNCC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 505
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SaqAI TTAA 3 cut(s) 146, 476, 513
SatI GCNGC 1 cut(s) 463
Sau3AI GATC 2 cut(s) 300, 390
ScrFI CCNGG 1 cut(s) 243
SetI ASST 6 cut(s) 96, 138, 146, 235, 255, 499
SmlI CTYRAG 2 cut(s) 343, 368
SmoI CTYRAG 2 cut(s) 343, 368
Sse9I AATT 2 cut(s) 349, 399
SsiI CCGC 1 cut(s) 462
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 4 cut(s) 106, 283, 296, 359
TasI AATT 2 cut(s) 349, 399
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 3 cut(s) 146, 476, 513
Tru9I TTAA 3 cut(s) 146, 476, 513
TscAI CASTG 2 cut(s) 364, 400
TspDTI ATGAA 2 cut(s) 44, 550
TspRI CASTG 2 cut(s) 364, 400
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.