Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008438

Physical Location & Seq

Genomic Coordinates Forward (+)

11860989 .. 11862513

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGTCACCGCTGCGTCTCCTCCTCCTCCCACTATTTCTTTCCTGCATTGTTTTGTTGAGCCACCAGGTCAAATGCGATGGAGTAGATGAGGAAGATAGTCTTCTTCAAGGCATCAACAGCTATAGGGCTTCCACCTTGAACTTAACGGCCCTTGCAAAGAATGCCAACGCAGAGTGCCTTGCCAAAGAGATAGCTGAGCAATTCAAAAGTCAACCCTGTACAAACACAACAGGGTCCAACACAGTACCAGGCACTGAACCTAATTTTCCTGACTATCCAAAACTTTTAGCCAAATGCCACTTGAATGTCTCTAACACAAGAGATGGGGTTGTAATGCCTGCTTGTGTTCCCAGCCTCGTTCCTAGTCTGGTCCTTACCAACTTCACAGAGTCTCAGTACTCTGATCATCTTAACGACACTAAGTTTACCGGAATTGGAATTGGCTCTGAAGAGAACTGGATTGTTGCTGTCCTGACCACGAGCACACCAGAAGGAAGCTTTGTGACTGCACAAAGTTCACCAGATGCGCAAGATTCCGCCAGTTCAGCTTCCAAGATCAATCTGGTTCCCTACTTGCTATTTCTGCTAATGGGTTTTATCTTTCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

21.95

Weight (kDa)

4.83

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06035 AT5G19230 AT5G19230 AT5G19240 AT5G19250
fragaria_vesca	FvH4_4g14890
malus_domestica	MD13G1186300.v1.1 MD16G1187000.v1.1
prunus_persica	Prupe.1G154000_v2.0.a1
pyrus_communis	pycom13g16120 pycom16g15700
rosa_chinensis	RchiOBHm_Chr4g0417311
rosa_laevigata	RLG00000007918
rosa_multiflora	Rmu_sc0000646.1_g000001 Rmu_sc0002129.1_g000049
rosa_roxburghii	Rroxscaffold_5G00361060
rosa_rugosa	Rorug04G0146700 Rorug04G0146800
rosa_samantha	Rh4AG210300 Rh4BG210900 Rh4CG221300 Rh4DG208300
rosa_wichuraiana	Rw4G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	531
AciI	CCGC	2 cut(s)	11, 540
AcuI	CTGAAG	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	223, 249, 401
AgsI	TTSAA	4 cut(s)	110, 142, 208, 307
AjnI	CCWGG	2 cut(s)	66, 250
AluBI	AGCT	4 cut(s)	123, 197, 501, 551
AluI	AGCT	4 cut(s)	123, 197, 501, 551
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	3 cut(s)	23, 316, 399
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	3 cut(s)	151, 237, 373
AsuHPI	GGTGA	1 cut(s)	513
AvaII	GGWCC	2 cut(s)	237, 373
BauI	CACGAG	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	488
BccI	CCATC	2 cut(s)	74, 320
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	2 cut(s)	68, 252
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	23, 316, 399
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	124
BisI	GCNGC	1 cut(s)	14
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	15
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	2 cut(s)	68, 252
Bme18I	GGWCC	2 cut(s)	237, 373
BmgT120I	GGNCC	3 cut(s)	151, 237, 373
BmiI	GGNNCC	2 cut(s)	238, 570
BmrFI	CCNGG	2 cut(s)	68, 252
BmsI	GCATC	2 cut(s)	123, 517
BpiI	GAAGAC	1 cut(s)	95
Bpu1102I	GCTNAGC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	464, 543
BseBI	CCWGG	2 cut(s)	68, 252
BseMII	CTCAG	2 cut(s)	189, 410
BseNI	ACTGG	2 cut(s)	464, 543
BseRI	GAGGAG	3 cut(s)	11, 14, 17
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	432
BsmAI	GTCTC	3 cut(s)	23, 316, 399
BsmBI	CGTCTC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp1407I	TGTACA	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	406, 558
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	2 cut(s)	11, 540
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	190, 409
BspLI	GGNNCC	2 cut(s)	238, 570
BsrGI	TGTACA	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	464, 543
BssMI	GATC	2 cut(s)	406, 558
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	68, 252
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	447
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	198, 396, 423
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	2 cut(s)	409, 561
BstMAI	GTCTC	3 cut(s)	23, 316, 399
BstMBI	GATC	2 cut(s)	406, 558
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 164, 548, 586
BstNI	CCWGG	2 cut(s)	68, 252
BstSCI	CCNGG	2 cut(s)	66, 250
BstSFI	CTRYAG	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	151, 237, 373
CseI	GACGC	1 cut(s)	5
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	222, 248, 400
CviQI	GTAC	3 cut(s)	222, 248, 400
DdeI	CTNAG	3 cut(s)	198, 396, 423
DpnI	GATC	2 cut(s)	408, 560
DpnII	GATC	2 cut(s)	406, 558
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	237, 373
Eco57I	CTGAAG	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	66, 250
Esp3I	CGTCTC	1 cut(s)	23
FaiI	YATR	1 cut(s)	126
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	366
FspI	TGCGCA	1 cut(s)	531
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	1 cut(s)	14
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	432
HgaI	GACGC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	532
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	499
HinfI	GANTC	2 cut(s)	392, 536
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	1 cut(s)	513
Hpy166II	GTNNAC	3 cut(s)	215, 429, 521
Hpy188I	TCNGA	2 cut(s)	406, 451
Hpy188III	TCNNGA	2 cut(s)	272, 475
Hpy8I	GTNNAC	3 cut(s)	215, 429, 521
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	48, 158, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 164, 548, 586
HpyF3I	CTNAG	3 cut(s)	198, 396, 423
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	530
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	406, 558
LweI	GCATC	2 cut(s)	123, 517
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	6, 505
MalI	GATC	2 cut(s)	408, 560
MboI	GATC	2 cut(s)	406, 558
MboII	GAAGA	4 cut(s)	95, 98, 107, 464
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	4 cut(s)	203, 265, 435, 441
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	32, 35, 38, 85, 368
MseI	TTAA	2 cut(s)	146, 414
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	2 cut(s)	68, 252
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	2 cut(s)	68, 252
MwoI	GCNNNNNNNGC	4 cut(s)	120, 164, 548, 586
NdeII	GATC	2 cut(s)	406, 558
NlaIV	GGNNCC	2 cut(s)	238, 570
NmuCI	GTSAC	2 cut(s)	6, 505
NsbI	TGCGCA	1 cut(s)	531
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	66, 250
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	2 cut(s)	66, 250
PspN4I	GGNNCC	2 cut(s)	238, 570
PspPI	GGNCC	3 cut(s)	151, 237, 373
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	223, 249, 401
RsaNI	GTAC	3 cut(s)	222, 248, 400
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	146, 414
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	406, 558
Sau96I	GGNCC	3 cut(s)	151, 237, 373
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	68, 252
SduI	GDGCHC	1 cut(s)	488
SetI	ASST	7 cut(s)	72, 125, 140, 199, 265, 503, 553
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	2 cut(s)	123, 517
SfcI	CTRYAG	1 cut(s)	124
SinI	GGWCC	2 cut(s)	237, 373
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	4 cut(s)	203, 265, 435, 441
SsiI	CCGC	2 cut(s)	11, 540
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	66, 250
TaaI	ACNGT	1 cut(s)	247
TasI	AATT	4 cut(s)	203, 265, 435, 441
TatI	WGTACW	2 cut(s)	221, 399
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	146, 414
Tru9I	TTAA	2 cut(s)	146, 414
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	6, 505
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	2 cut(s)	6, 505
TspDTI	ATGAA	1 cut(s)	596
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	237, 373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XspI	CTAG	1 cut(s)	366
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.