RchiOBHm_Chr4g0417311

GPI-anchored protein At3g06035-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008438
Physical Location & Seq
Reverse (-)
42578663 .. 42579494
832 bp
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UTR
Exon/CDS
Intron
PRQ38740

Sequence Viewer

Length: 285 bp
ATGCCTTCTTGCGTTCCTAATCTGGATCCTAGTCTTGTCCTTACCAACTTCACTAAGTCTCAGTACTCGTCGAATCTTAATCAGACAAATTTTACAGGAATTGGAATTGGTTCTGAAGATAACTGGATTGTTGTAATTTTGACCACGAGCACACCCGAAGGAAGCTATGTTCCTGCACAAAGCACTGACAGTGCCACTGGCAGTGCCAGTTTAGGTTCCAAATCCAAGATTAGTTTGATTCAATACTTGCTGTGTTTGCTGATGGGGTTTGTCTTTCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.02

Weight (kDa)

4.83

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At5g19230 PF25884 1 - 47 1.2e-19 Uncharacterized GPI-anchored protein At5g19230-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 20, 33
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 65
AgsI TTSAA 1 cut(s) 242
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 2 cut(s) 20, 33
ApoI RAATTY 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 109
BamHI GGATCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 152
BccI CCATC 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 27, 217
Bse1I ACTGG 3 cut(s) 128, 202, 207
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 3 cut(s) 128, 202, 207
BsgI GTGCAG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 27, 217
BspPI GGATC 2 cut(s) 20, 33
BsrI ACTGG 3 cut(s) 128, 202, 207
BssMI GATC 1 cut(s) 25
BssSI CACGAG 1 cut(s) 145
Bst2BI CACGAG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 54, 60
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 4 cut(s) 183, 195, 196, 208
Csp6I GTAC 1 cut(s) 64
CviJI RGCY 1 cut(s) 165
CviKI_1 RGCY 1 cut(s) 165
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 2 cut(s) 54, 60
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 135
FaiI YATR 1 cut(s) 168
FspBI CTAG 1 cut(s) 30
HinfI GANTC 2 cut(s) 73, 238
Hpy188I TCNGA 2 cut(s) 84, 115
Hpy188III TCNNGA 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 15, 152
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 2 cut(s) 54, 60
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 6 cut(s) 8, 81, 109, 183, 186, 220
MaeI CTAG 1 cut(s) 30
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 128
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 4 cut(s) 88, 99, 105, 135
MroXI GAANNNNTTC 1 cut(s) 109
MseI TTAA 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 256
NdeII GATC 1 cut(s) 25
NlaIV GGNNCC 2 cut(s) 27, 217
PdmI GAANNNNTTC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 73, 238
PspN4I GGNNCC 2 cut(s) 27, 217
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 25
ScaI AGTACT 1 cut(s) 65
SduI GDGCHC 1 cut(s) 152
SetI ASST 2 cut(s) 167, 217
Sse9I AATT 4 cut(s) 88, 99, 105, 135
SspMI CTAG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 71
TasI AATT 4 cut(s) 88, 99, 105, 135
TatI WGTACW 1 cut(s) 63
TfiI GAWTC 2 cut(s) 73, 238
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 4 cut(s) 190, 196, 202, 208
TspDTI ATGAA 1 cut(s) 266
TspRI CASTG 4 cut(s) 190, 196, 202, 208
XapI RAATTY 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 109
XspI CTAG 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.