AT5G19240

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008438
Physical Location & Seq
Forward (+)
6470072 .. 6471636
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19240.1

Sequence Viewer

Length: 600 bp
ATGGCGATTTCCAAGCTCCATCTAGTACTCTTTCTTCTCTCAGTCTTTCTCTCTCTTCATCGTCCTGTTCTTTCCAACACCGATGGAGAAAACCTTCTATTTACAGTATTCAACCAATACAGAGAATCAGTAAACCTCACAAACCTAAAAAAGAACAAAAACGCAGAATGTCTAGCAGACGAAGTCGTAGACCAATTACAGAACCAACCCTGCACAAACACCACTGGCTCAGCTTCAGTCCCTGGAACAGATCCTGGAATCCCAAATTTCCCTAACCTCCTCGCTAAATGCCGCCTCAACACAAACGTAACCAGAGACGGTTTGATATTGCAAGTTTGTGCTCCTAAGCATCATTCGACCCCTGACTTGAGCAGTTTCGCCAATGTCTTAACAAAGAACCTGAATGATTCTAAGTTCACTGGAGCTGGAGTTGGTATTGATTCTGATGGTATTTGGCTTGTTACCGTCCTCACTACAAACACACCAGGGGGTAGCTATTCTAACTCAGGAGCTTTTGCATTCGGAGTTAATGGCCTTGTTTCTTCAAGTTTGATGTTTCTTCATGTTTTGAGTCACAACTCGTTGTCTTTGTTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.33

Weight (kDa)

6.57

Isoelectric Point (pI)

18.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At5g19230 PF25884 30 - 157 7.4e-43 Uncharacterized GPI-anchored protein At5g19230-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 292
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 27
AgsI TTSAA 2 cut(s) 112, 546
AjnI CCWGG 3 cut(s) 241, 253, 484
AluBI AGCT 5 cut(s) 16, 233, 425, 495, 512
AluI AGCT 5 cut(s) 16, 233, 425, 495, 512
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 1 cut(s) 245
AlwNI CAGNNNCTG 2 cut(s) 242, 254
AoxI GGCC 1 cut(s) 532
ApoI RAATTY 1 cut(s) 265
Asp700I GAANNNNTTC 1 cut(s) 93
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
Bbv12I GWGCWC 1 cut(s) 343
BccI CCATC 3 cut(s) 27, 77, 440
BciT130I CCWGG 3 cut(s) 243, 255, 486
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 2 cut(s) 23, 173
BisI GCNGC 1 cut(s) 292
BlpI GCTNAGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 293
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 3 cut(s) 243, 255, 486
BmrFI CCNGG 3 cut(s) 243, 255, 486
BmsI GCATC 1 cut(s) 358
BpmI CTGGAG 2 cut(s) 441, 447
Bpu10I CCTNAGC 1 cut(s) 345
Bpu1102I GCTNAGC 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 241, 485
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bse1I ACTGG 2 cut(s) 229, 424
BseBI CCWGG 3 cut(s) 243, 255, 486
BseDI CCNNGG 2 cut(s) 241, 485
BseMII CTCAG 3 cut(s) 54, 243, 519
BseNI ACTGG 2 cut(s) 229, 424
BseRI GAGGAG 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 1 cut(s) 534
BsiHKAI GWGCWC 1 cut(s) 343
BslFI GGGAC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 309
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 518
BsnI GGCC 1 cut(s) 534
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 250
Bsp1720I GCTNAGC 1 cut(s) 229
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 534
BspCNI CTCAG 3 cut(s) 53, 242, 518
BspPI GGATC 1 cut(s) 245
BsrI ACTGG 2 cut(s) 229, 424
BssECI CCNNGG 2 cut(s) 241, 485
BssMI GATC 1 cut(s) 250
Bst2UI CCWGG 3 cut(s) 243, 255, 486
Bst4CI ACNGT 3 cut(s) 106, 320, 466
Bst6I CTCTTC 1 cut(s) 60
BstDEI CTNAG 5 cut(s) 40, 229, 345, 411, 505
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 1 cut(s) 250
BstNI CCWGG 3 cut(s) 243, 255, 486
BstSCI CCNGG 3 cut(s) 241, 253, 484
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 1 cut(s) 534
BtsIMutI CAGTG 2 cut(s) 222, 417
CaiI CAGNNNCTG 2 cut(s) 242, 254
Csp6I GTAC 1 cut(s) 26
CviAII CATG 1 cut(s) 563
CviJI RGCY 8 cut(s) 16, 228, 233, 425, 457, 495, 512, 534
CviKI_1 RGCY 8 cut(s) 16, 228, 233, 425, 457, 495, 512, 534
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 5 cut(s) 40, 229, 345, 411, 505
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 219
EcoRII CCWGG 3 cut(s) 241, 253, 484
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 1 cut(s) 566
FaiI YATR 1 cut(s) 564
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 562
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 292
FspBI CTAG 2 cut(s) 23, 173
GluI GCNGC 1 cut(s) 292
GsuI CTGGAG 2 cut(s) 441, 447
HaeIII GGCC 1 cut(s) 534
Hin1II CATG 1 cut(s) 566
HinfI GANTC 5 cut(s) 125, 258, 407, 440, 571
Hpy166II GTNNAC 3 cut(s) 133, 190, 417
Hpy188I TCNGA 2 cut(s) 445, 524
Hpy188III TCNNGA 1 cut(s) 507
Hpy8I GTNNAC 3 cut(s) 133, 190, 417
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 3 cut(s) 106, 320, 466
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 213, 331, 518
HpyF3I CTNAG 5 cut(s) 40, 229, 345, 411, 505
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 566
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 4 cut(s) 21, 346, 422, 509
LweI GCATC 1 cut(s) 358
MaeI CTAG 2 cut(s) 23, 173
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 307, 460, 572
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 4 cut(s) 26, 47, 534, 551
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 2 cut(s) 194, 265
MlyI GAGTC 1 cut(s) 580
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 5 cut(s) 146, 287, 290, 305, 479
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 3 cut(s) 389, 528, 598
MspR9I CCNGG 3 cut(s) 243, 255, 486
Mva1269I GAATGC 1 cut(s) 518
MvaI CCWGG 3 cut(s) 243, 255, 486
NdeII GATC 1 cut(s) 250
NlaIII CATG 1 cut(s) 566
NmuCI GTSAC 1 cut(s) 572
PctI GAATGC 1 cut(s) 518
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 4 cut(s) 125, 258, 407, 440
PflFI GACNNNGTC 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 1 cut(s) 293
PleI GAGTC 1 cut(s) 579
PpsI GAGTC 1 cut(s) 579
Psp6I CCWGG 3 cut(s) 241, 253, 484
PspGI CCWGG 3 cut(s) 241, 253, 484
PstNI CAGNNNCTG 2 cut(s) 242, 254
PsuI RGATCY 1 cut(s) 250
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SaqAI TTAA 3 cut(s) 389, 528, 598
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 1 cut(s) 250
ScaI AGTACT 1 cut(s) 27
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 3 cut(s) 243, 255, 486
SduI GDGCHC 1 cut(s) 343
SfaNI GCATC 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 2 cut(s) 194, 265
SsiI CCGC 1 cut(s) 292
SspMI CTAG 2 cut(s) 23, 173
StyD4I CCNGG 3 cut(s) 241, 253, 484
TaaI ACNGT 3 cut(s) 106, 320, 466
TaiI ACGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 356
TasI AATT 2 cut(s) 194, 265
TatI WGTACW 1 cut(s) 25
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 4 cut(s) 125, 258, 407, 440
Tru1I TTAA 3 cut(s) 389, 528, 598
Tru9I TTAA 3 cut(s) 389, 528, 598
TscAI CASTG 2 cut(s) 229, 424
TseFI GTSAC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 2 cut(s) 47, 551
TspRI CASTG 2 cut(s) 229, 424
Tth111I GACNNNGTC 1 cut(s) 182
XapI RAATTY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 2 cut(s) 23, 173
ZrmI AGTACT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.