AT5G19250

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008438
Physical Location & Seq
Forward (+)
6471827 .. 6472989
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19250.1

Sequence Viewer

Length: 591 bp
ATGGCGATCTCCAAGCTCCATCTACTCTTCCTTCTCTCAGTCTTTCTCTCCCTTCATCCTCTTGTTCTTTCCGACACCGCCGATGAAGAAGATGTTCTTCTTACAGGCATCAACAGTTACAGAGCATCACTAAACCTAACAACCTTAATACACAACCACAACGCAGAATGTCTAGCAGACGAAATCGCAGACCAATTCAAGAACCAACCTTGCACAAACACCACTGGCTCAGCCTCTGTCCCTGGAACCACACCTGGATTCCCAAACTTGCCTAACCTCCTCTCAAAATGCCGCCTCAACCCTACCGTAACTAGAGACGGTGCGATTTTGCCAGCTTGTGTTCCCAACCTTGATCCTAGCCTTGTCTTGACCAATTTCACAATGTCACAGTACTCCAAGGACCTGAATGATTCTAAGTTCACTGGTATTGGTATTGGTTCTGATGATAATTGGATTGTTGTTGTCCTCACTACTAGCACACCGGAGGGTAGCTATTCTCCGGCCTCTAACTCAGGAGCTTTCGCGTTCGGAGTTAATGGCCTTGTTTCTTCAAGTTTGATGTTTCTTCTCTTTTGCTTCTTCATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.03

Weight (kDa)

4.65

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At5g19230 PF25884 30 - 156 7.3e-57 Uncharacterized GPI-anchored protein At5g19230-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 524
AciI CCGC 2 cut(s) 78, 292
AclWI GGATC 1 cut(s) 347
AfaI GTAC 1 cut(s) 392
AgsI TTSAA 2 cut(s) 199, 552
AjnI CCWGG 2 cut(s) 241, 253
AluBI AGCT 4 cut(s) 16, 335, 492, 518
AluI AGCT 4 cut(s) 16, 335, 492, 518
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 1 cut(s) 347
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 2 cut(s) 501, 538
Asp700I GAANNNNTTC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 400
AvaII GGWCC 1 cut(s) 400
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 2 cut(s) 243, 255
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 4 cut(s) 173, 312, 357, 474
BisI GCNGC 1 cut(s) 292
BlpI GCTNAGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 293
BmcAI AGTACT 1 cut(s) 392
Bme1390I CCNGG 2 cut(s) 243, 255
Bme18I GGWCC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 243, 255
BmsI GCATC 2 cut(s) 117, 134
Bpu1102I GCTNAGC 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 241, 396
BsaWI WCCGGW 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 229, 427
BseBI CCWGG 2 cut(s) 243, 255
BseDI CCNNGG 2 cut(s) 241, 396
BseGI GGATG 1 cut(s) 55
BseMII CTCAG 3 cut(s) 51, 243, 525
BseNI ACTGG 2 cut(s) 229, 427
BseRI GAGGAG 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 524
BshFI GGCC 2 cut(s) 503, 540
BsiSI CCGG 2 cut(s) 482, 500
BslFI GGGAC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 309
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 2 cut(s) 503, 540
Bsp143I GATC 2 cut(s) 6, 352
Bsp1720I GCTNAGC 1 cut(s) 229
BspACI CCGC 2 cut(s) 78, 292
BspANI GGCC 2 cut(s) 503, 540
BspCNI CTCAG 3 cut(s) 50, 242, 524
BspFNI CGCG 1 cut(s) 524
BspLI GGNNCC 1 cut(s) 247
BspPI GGATC 1 cut(s) 347
BsrI ACTGG 2 cut(s) 229, 427
BssECI CCNNGG 2 cut(s) 241, 396
BssMI GATC 2 cut(s) 6, 352
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 243, 255
Bst4CI ACNGT 4 cut(s) 116, 307, 320, 390
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 4 cut(s) 37, 229, 414, 511
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 524
BstKTI GATC 2 cut(s) 9, 355
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 2 cut(s) 6, 352
BstNI CCWGG 2 cut(s) 243, 255
BstSCI CCNGG 2 cut(s) 241, 253
BstUI CGCG 1 cut(s) 524
BsuRI GGCC 2 cut(s) 503, 540
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 222, 420
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 400
Csp6I GTAC 1 cut(s) 391
CviAII CATG 1 cut(s) 583
CviJI RGCY 9 cut(s) 16, 228, 233, 335, 360, 492, 503, 518, 540
CviKI_1 RGCY 9 cut(s) 16, 228, 233, 335, 360, 492, 503, 518, 540
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 4 cut(s) 37, 229, 414, 511
DpnI GATC 2 cut(s) 8, 354
DpnII GATC 2 cut(s) 6, 352
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 241, 253
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 1 cut(s) 586
FaiI YATR 1 cut(s) 584
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 582
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 292
FspBI CTAG 4 cut(s) 173, 312, 357, 474
GluI GCNGC 1 cut(s) 292
HaeIII GGCC 2 cut(s) 503, 540
HapII CCGG 2 cut(s) 482, 500
Hin1II CATG 1 cut(s) 586
HinfI GANTC 2 cut(s) 258, 410
HpaII CCGG 2 cut(s) 482, 500
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 3 cut(s) 73, 442, 530
Hpy188III TCNNGA 3 cut(s) 199, 367, 513
Hpy8I GTNNAC 1 cut(s) 420
HpyAV CCTTC 2 cut(s) 41, 62
HpyCH4III ACNGT 4 cut(s) 116, 307, 320, 390
HpyCH4V TGCA 1 cut(s) 213
HpyF3I CTNAG 4 cut(s) 37, 229, 414, 511
Hsp92II CATG 1 cut(s) 586
Kzo9I GATC 2 cut(s) 6, 352
LmnI GCTCC 2 cut(s) 21, 515
LweI GCATC 2 cut(s) 117, 134
MaeI CTAG 4 cut(s) 173, 312, 357, 474
MaeIII GTNAC 3 cut(s) 116, 307, 384
MalI GATC 2 cut(s) 8, 354
MboI GATC 2 cut(s) 6, 352
MboII GAAGA 7 cut(s) 19, 89, 98, 101, 540, 557, 571
MluCI AATT 3 cut(s) 194, 373, 448
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 8 cut(s) 69, 244, 287, 290, 305, 476, 478, 514
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 2 cut(s) 146, 534
MspI CCGG 2 cut(s) 482, 500
MspR9I CCNGG 2 cut(s) 243, 255
MvaI CCWGG 2 cut(s) 243, 255
MvnI CGCG 1 cut(s) 524
NdeII GATC 2 cut(s) 6, 352
NlaIII CATG 1 cut(s) 586
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 2 cut(s) 258, 410
PkrI GCNGC 1 cut(s) 293
PpuMI RGGWCCY 1 cut(s) 400
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 2 cut(s) 241, 253
PspGI CCWGG 2 cut(s) 241, 253
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 400
PspPPI RGGWCCY 1 cut(s) 400
PstNI CAGNNNCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SaqAI TTAA 2 cut(s) 146, 534
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 2 cut(s) 6, 352
Sau96I GGNCC 1 cut(s) 400
ScaI AGTACT 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 243, 255
SfaNI GCATC 2 cut(s) 117, 134
SinI GGWCC 1 cut(s) 400
Sse9I AATT 3 cut(s) 194, 373, 448
SsiI CCGC 2 cut(s) 78, 292
SspMI CTAG 4 cut(s) 173, 312, 357, 474
StyD4I CCNGG 2 cut(s) 241, 253
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 4 cut(s) 116, 307, 320, 390
TasI AATT 3 cut(s) 194, 373, 448
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 2 cut(s) 258, 410
Tru1I TTAA 2 cut(s) 146, 534
Tru9I TTAA 2 cut(s) 146, 534
TscAI CASTG 2 cut(s) 229, 427
TseFI GTSAC 1 cut(s) 384
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 3 cut(s) 44, 99, 571
TspRI CASTG 2 cut(s) 229, 427
VpaK11BI GGWCC 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 4 cut(s) 173, 312, 357, 474
ZrmI AGTACT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.