Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002129.1

Orthogroup ID

OG0008438

Physical Location & Seq

Genomic Coordinates Reverse (-)

196216 .. 197285

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002129.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgctggcggtttggttcaatggctttgacgagtttgctcgaaaaagcaatggtgcagtgtcccctgaacttgaggaactcccttctttgggcaaagtctatacgagaatgcttgttgaaaagacaagtggaatagggcaaccactactagttgatgaggaggataatcttcttcaaggcatcaacagctatagggcttctgccaacttaacagcccttacaaagaatgacaatgccgagtgcctggcagatgagatagctgaccaattcaaaaagcaaccctgtacaaacaccacaggttccttcacggtaccaggcactgaaacccagtttgccaactttccagaccttttagccaaatgtcatttgaatgtctcaaacacaagggatggagtcataatgccttcttgcgttccgaatctggatcctagtctcgtccttgccaacttcactaagtctcagtactcgtcgaatcttaatcagacaaattttacaggaattggaattggttctgaagataactggattgttgttattttgaccacgagcacacccgaaggaagctatgttcctgcacaaagcactgacagtgccactggcaaccaagaggtttatcataccaattttctgcttttccgacctagagaggacaatgattctcccattggagctgcttccatggtggaattcgatttcgtacttgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

25.57

Weight (kDa)

4.36

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06035 AT5G19230 AT5G19230 AT5G19240 AT5G19250
fragaria_vesca	FvH4_4g14890
malus_domestica	MD13G1186300.v1.1 MD16G1187000.v1.1
prunus_persica	Prupe.1G154000_v2.0.a1
pyrus_communis	pycom13g16120 pycom16g15700
rosa_chinensis	RchiOBHm_Chr4g0417311
rosa_laevigata	RLG00000007918
rosa_multiflora	Rmu_sc0000646.1_g000001 Rmu_sc0002129.1_g000049
rosa_roxburghii	Rroxscaffold_5G00361060
rosa_rugosa	Rorug04G0146700 Rorug04G0146800
rosa_samantha	Rh4AG210300 Rh4BG210900 Rh4CG221300 Rh4DG208300
rosa_wichuraiana	Rw4G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	310
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	419, 432
AcsI	RAATTY	2 cut(s)	487, 686
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	4 cut(s)	286, 312, 464, 699
AfiI	CCNNNNNNNGG	2 cut(s)	88, 89
AgsI	TTSAA	5 cut(s)	19, 119, 176, 271, 370
AhlI	ACTAGT	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	243, 313
AloI	GAACNNNNNNTCC	2 cut(s)	552, 584
AluBI	AGCT	4 cut(s)	189, 260, 564, 671
AluI	AGCT	4 cut(s)	189, 260, 564, 671
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	3 cut(s)	379, 437, 462
AlwI	GGATC	2 cut(s)	419, 432
AlwNI	CAGNNNCTG	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	671
ApoI	RAATTY	2 cut(s)	487, 686
Asp700I	GAANNNNTTC	1 cut(s)	508
Asp718I	GGTACC	1 cut(s)	310
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	2 cut(s)	245, 315
BcoDI	GTCTC	3 cut(s)	379, 437, 462
BcuI	ACTAGT	1 cut(s)	148
BfaI	CTAG	3 cut(s)	149, 429, 642
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	1 cut(s)	672
BlsI	GCNGC	1 cut(s)	673
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	2 cut(s)	245, 315
BmiI	GGNNCC	3 cut(s)	301, 312, 426
BmrFI	CCNGG	2 cut(s)	245, 315
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 89
Bse1I	ACTGG	3 cut(s)	328, 527, 601
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	245, 315
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	88, 89
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	3 cut(s)	328, 527, 601
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	658
BsgI	GTGCAG	2 cut(s)	75, 558
BshNI	GGYRCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	88, 89
BsmAI	GTCTC	3 cut(s)	379, 437, 462
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp1407I	TGTACA	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	424
Bsp19I	CCATGG	1 cut(s)	678
BspACI	CCGC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	472
BspLI	GGNNCC	3 cut(s)	301, 312, 426
BspPI	GGATC	2 cut(s)	419, 432
BspT107I	GGYRCC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	328, 527, 601
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	1 cut(s)	424
BssSI	CACGAG	1 cut(s)	544
BssT1I	CCWWGG	1 cut(s)	678
Bst2BI	CACGAG	1 cut(s)	544
Bst2UI	CCWGG	2 cut(s)	245, 315
Bst4CI	ACNGT	2 cut(s)	310, 590
BstAUI	TGTACA	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	453, 459
BstDSI	CCRYGG	1 cut(s)	678
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	3 cut(s)	379, 437, 462
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	2 cut(s)	245, 315
BstSCI	CCNGG	2 cut(s)	243, 313
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	658
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BtgI	CCRYGG	1 cut(s)	678
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	5 cut(s)	63, 318, 582, 594, 595
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	320
Csp6I	GTAC	4 cut(s)	285, 311, 463, 698
CviAII	CATG	1 cut(s)	679
CviJI	RGCY	8 cut(s)	24, 189, 197, 215, 260, 356, 564, 671
CviKI_1	RGCY	8 cut(s)	24, 189, 197, 215, 260, 356, 564, 671
CviQI	GTAC	4 cut(s)	285, 311, 463, 698
DdeI	CTNAG	2 cut(s)	453, 459
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	678
Eco57I	CTGAAG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	686
EcoRII	CCWGG	2 cut(s)	243, 313
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	1 cut(s)	682
FaiI	YATR	7 cut(s)	102, 192, 398, 567, 618, 680, 706
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	678
Fnu4HI	GCNGC	1 cut(s)	672
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	1 cut(s)	672
FspBI	CTAG	3 cut(s)	149, 429, 642
GluI	GCNGC	1 cut(s)	672
Hin1II	CATG	1 cut(s)	682
HinfI	GANTC	4 cut(s)	393, 418, 472, 656
Hpy188I	TCNGA	4 cut(s)	417, 483, 514, 638
Hpy188III	TCNNGA	2 cut(s)	344, 422
Hpy99I	CGWCG	1 cut(s)	472
HpyAV	CCTTC	4 cut(s)	93, 313, 414, 551
HpyCH4III	ACNGT	2 cut(s)	310, 590
HpyCH4V	TGCA	3 cut(s)	56, 575, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	2 cut(s)	453, 459
Hsp92II	CATG	1 cut(s)	682
KpnI	GGTACC	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	3 cut(s)	149, 429, 642
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	3 cut(s)	161, 164, 527
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	6 cut(s)	266, 487, 498, 504, 622, 686
MlyI	GAGTC	1 cut(s)	402
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	5 cut(s)	67, 151, 154, 601, 640
MroXI	GAANNNNTTC	1 cut(s)	508
MseI	TTAA	2 cut(s)	209, 477
MslI	CAYNNNNRTG	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	245, 315
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	2 cut(s)	245, 315
MwoI	GCNNNNNNNGC	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	1 cut(s)	682
NlaIV	GGNNCC	3 cut(s)	301, 312, 426
NmeAIII	GCCGAG	1 cut(s)	262
PctI	GAATGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	418, 472, 656
PkrI	GCNGC	1 cut(s)	673
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	243, 313
PspGI	CCWGG	2 cut(s)	243, 313
PspN4I	GGNNCC	3 cut(s)	301, 312, 426
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	4 cut(s)	286, 312, 464, 699
RsaNI	GTAC	4 cut(s)	285, 311, 463, 698
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	209, 477
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	1 cut(s)	424
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	2 cut(s)	245, 315
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	8 cut(s)	191, 262, 301, 351, 566, 612, 643, 673
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	148
Sse9I	AATT	6 cut(s)	266, 487, 498, 504, 622, 686
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	3 cut(s)	149, 429, 642
StyD4I	CCNGG	2 cut(s)	243, 313
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	2 cut(s)	310, 590
TaqI	TCGA	3 cut(s)	40, 470, 690
TasI	AATT	6 cut(s)	266, 487, 498, 504, 622, 686
TatI	WGTACW	2 cut(s)	284, 462
TfiI	GAWTC	3 cut(s)	418, 472, 656
Tru1I	TTAA	2 cut(s)	209, 477
Tru9I	TTAA	2 cut(s)	209, 477
TscAI	CASTG	5 cut(s)	63, 325, 589, 595, 601
TseI	GCWGC	1 cut(s)	671
TspRI	CASTG	5 cut(s)	63, 325, 589, 595, 601
XapI	RAATTY	2 cut(s)	487, 686
XmnI	GAANNNNTTC	1 cut(s)	508
XspI	CTAG	3 cut(s)	149, 429, 642
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.