Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000646.1

Orthogroup ID

OG0008438

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1201

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000646.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 569 bp

ttgatgaggaggataatcttcttcaaggcatcaacagctatagggcttctgccaacttaacagcccttacaaagaatgacaatgcagagtgcctggcagatgagatagctgaccaattcaaaaagcaaccctgtacaaacaccacaggttccttcacggtaccaggcactgaaacccagtttaccaactttccagaccttttaaccaaatgtcatttgaatgtctcaaacacaagggatggagtcataatgccttcttgcgttccgaatctggatcctagtctcgtccttaccaacttcactaagtctcagtactcgtcaaatcttaatcagacaaattttacaggaattggaattggttctgaagataactggattgttgtaattttgaccacgagcacacccgaaggaagctatgttcctgcacaaagcactgacagtgccactggcagtgccagtttagaccaagaggtttatcataccaattttctgcttttccgacctagagaggacaatgattctcccattggagctgcttccatggtggaattcgatttcgtacttgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.42

Weight (kDa)

4.15

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06035 AT5G19230 AT5G19230 AT5G19240 AT5G19250
fragaria_vesca	FvH4_4g14890
malus_domestica	MD13G1186300.v1.1 MD16G1187000.v1.1
prunus_persica	Prupe.1G154000_v2.0.a1
pyrus_communis	pycom13g16120 pycom16g15700
rosa_chinensis	RchiOBHm_Chr4g0417311
rosa_laevigata	RLG00000007918
rosa_multiflora	Rmu_sc0000646.1_g000001 Rmu_sc0002129.1_g000049
rosa_roxburghii	Rroxscaffold_5G00361060
rosa_rugosa	Rorug04G0146700 Rorug04G0146800
rosa_samantha	Rh4AG210300 Rh4BG210900 Rh4CG221300 Rh4DG208300
rosa_wichuraiana	Rw4G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	159
AclWI	GGATC	2 cut(s)	268, 281
AcsI	RAATTY	2 cut(s)	336, 547
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	4 cut(s)	135, 161, 313, 560
AgsI	TTSAA	3 cut(s)	25, 120, 219
AjnI	CCWGG	2 cut(s)	92, 162
AloI	GAACNNNNNNTCC	2 cut(s)	401, 433
AluBI	AGCT	4 cut(s)	38, 109, 413, 532
AluI	AGCT	4 cut(s)	38, 109, 413, 532
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	3 cut(s)	228, 286, 311
AlwI	GGATC	2 cut(s)	268, 281
AlwNI	CAGNNNCTG	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	2 cut(s)	336, 547
Asp700I	GAANNNNTTC	1 cut(s)	357
Asp718I	GGTACC	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	2 cut(s)	94, 164
BcoDI	GTCTC	3 cut(s)	228, 286, 311
BfaI	CTAG	2 cut(s)	278, 503
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
BmcAI	AGTACT	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	94, 164
BmiI	GGNNCC	3 cut(s)	150, 161, 275
BmrFI	CCNGG	2 cut(s)	94, 164
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	539
Bse1I	ACTGG	4 cut(s)	177, 376, 450, 455
BseBI	CCWGG	2 cut(s)	94, 164
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	4 cut(s)	177, 376, 450, 455
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	519
BsgI	GTGCAG	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	400
BsmAI	GTCTC	3 cut(s)	228, 286, 311
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	539
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	150, 161, 275
BspPI	GGATC	2 cut(s)	268, 281
BspT107I	GGYRCC	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	4 cut(s)	177, 376, 450, 455
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	1 cut(s)	273
BssSI	CACGAG	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	539
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	94, 164
Bst4CI	ACNGT	2 cut(s)	159, 439
BstAUI	TGTACA	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	302, 308
BstDSI	CCRYGG	1 cut(s)	539
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	3 cut(s)	228, 286, 311
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	2 cut(s)	94, 164
BstSCI	CCNGG	2 cut(s)	92, 162
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	519
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	539
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	5 cut(s)	167, 431, 443, 444, 456
CaiI	CAGNNNCTG	1 cut(s)	169
Csp6I	GTAC	4 cut(s)	134, 160, 312, 559
CviAII	CATG	1 cut(s)	540
CviJI	RGCY	6 cut(s)	38, 46, 64, 109, 413, 532
CviKI_1	RGCY	6 cut(s)	38, 46, 64, 109, 413, 532
CviQI	GTAC	4 cut(s)	134, 160, 312, 559
DdeI	CTNAG	2 cut(s)	302, 308
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	92, 162
EcoT14I	CCWWGG	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	1 cut(s)	543
FaiI	YATR	6 cut(s)	41, 247, 416, 479, 541, 567
FatI	CATG	1 cut(s)	539
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	533
FspBI	CTAG	2 cut(s)	278, 503
GluI	GCNGC	1 cut(s)	533
Hin1II	CATG	1 cut(s)	543
HinfI	GANTC	3 cut(s)	242, 267, 517
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	4 cut(s)	266, 332, 363, 499
Hpy188III	TCNNGA	2 cut(s)	193, 271
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	3 cut(s)	162, 263, 400
HpyCH4III	ACNGT	2 cut(s)	159, 439
HpyCH4V	TGCA	3 cut(s)	85, 424, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	302, 308
Hsp92II	CATG	1 cut(s)	543
KpnI	GGTACC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	2 cut(s)	278, 503
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	3 cut(s)	10, 13, 376
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	7 cut(s)	115, 336, 347, 353, 383, 483, 547
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	3 cut(s)	3, 462, 501
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	3 cut(s)	58, 202, 326
MslI	CAYNNNNRTG	1 cut(s)	218
MspR9I	CCNGG	2 cut(s)	94, 164
MvaI	CCWGG	2 cut(s)	94, 164
MwoI	GCNNNNNNNGC	1 cut(s)	35
NcoI	CCATGG	1 cut(s)	539
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	1 cut(s)	543
NlaIV	GGNNCC	3 cut(s)	150, 161, 275
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	267, 517
PkrI	GCNGC	1 cut(s)	534
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	92, 162
PspGI	CCWGG	2 cut(s)	92, 162
PspN4I	GGNNCC	3 cut(s)	150, 161, 275
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	4 cut(s)	135, 161, 313, 560
RsaNI	GTAC	4 cut(s)	134, 160, 312, 559
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	58, 202, 326
SatI	GCNGC	1 cut(s)	533
Sau3AI	GATC	1 cut(s)	273
ScaI	AGTACT	1 cut(s)	313
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	94, 164
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	8 cut(s)	40, 111, 150, 200, 415, 473, 504, 534
SfaNI	GCATC	1 cut(s)	38
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	7 cut(s)	115, 336, 347, 353, 383, 483, 547
SspMI	CTAG	2 cut(s)	278, 503
StyD4I	CCNGG	2 cut(s)	92, 162
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	2 cut(s)	159, 439
TaqI	TCGA	1 cut(s)	551
TasI	AATT	7 cut(s)	115, 336, 347, 353, 383, 483, 547
TatI	WGTACW	2 cut(s)	133, 311
TfiI	GAWTC	2 cut(s)	267, 517
Tru1I	TTAA	3 cut(s)	58, 202, 326
Tru9I	TTAA	3 cut(s)	58, 202, 326
TscAI	CASTG	5 cut(s)	174, 438, 444, 450, 456
TseI	GCWGC	1 cut(s)	532
TspRI	CASTG	5 cut(s)	174, 438, 444, 450, 456
XapI	RAATTY	2 cut(s)	336, 547
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	2 cut(s)	278, 503
ZrmI	AGTACT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.