Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008438

Physical Location & Seq

Genomic Coordinates Forward (+)

12122408 .. 12124247

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G154000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGTCTCTGCTGCGTCTTCTTCTTCCGCTGTTCCTTTCCTGCGTTGTTTTGTTCAGCCACCAAGTCAAGTGCGATGGAGATGAGGAAGATAGTCTTCTTCGAGGCATCAACGGCTATCGGGCTTCCACCTTGAACTTGACAATCCTTACAAAGAACGCCAATGCAGAGTGCCTTGCCGATGAGATAGCTGAGCAATTAAAAAATCAACCCTGCACAAACACCACAGGCGCCAACACTGTACCAGGCACTGAACCTCAGTTTTCTGACTATCCGAAACTTTTAGCCAAATGCCATTTGAATGTCTCTAACACAAGAGATGGGGTCATAATGCCTGCTTGCGTTCCCAGCCTGGTTCCTAGTCTGGTCCTTACCAACTTCACTGAGTCTCAGTACTCTGAGAGTCTTAATGACACCAAGTTTACAGGAATTGGAATTGGCTCTGAAGATAATTGGATTGTTGTTGTTTTGACCACCAACACACCAGATGGAAGCTTTACGAATGCACAAGGGTCACAAGATGAAGAAGAATCTGCGAGTTCAGTTCCGAAGATTAGTTTGGTTCCCTACTTGCTATGTTTGCTGATGGGTTTTATCTTCCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

21.87

Weight (kDa)

4.52

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06035 AT5G19230 AT5G19230 AT5G19240 AT5G19250
fragaria_vesca	FvH4_4g14890
malus_domestica	MD13G1186300.v1.1 MD16G1187000.v1.1
prunus_persica	Prupe.1G154000_v2.0.a1
pyrus_communis	pycom13g16120 pycom16g15700
rosa_chinensis	RchiOBHm_Chr4g0417311
rosa_laevigata	RLG00000007918
rosa_multiflora	Rmu_sc0000646.1_g000001 Rmu_sc0002129.1_g000049
rosa_roxburghii	Rroxscaffold_5G00361060
rosa_rugosa	Rorug04G0146700 Rorug04G0146800
rosa_samantha	Rh4AG210300 Rh4BG210900 Rh4CG221300 Rh4DG208300
rosa_wichuraiana	Rw4G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	2 cut(s)	5, 231
AfaI	GTAC	2 cut(s)	243, 395
AgsI	TTSAA	2 cut(s)	136, 301
AjnI	CCWGG	2 cut(s)	244, 351
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AluBI	AGCT	2 cut(s)	191, 495
AluI	AGCT	2 cut(s)	191, 495
Alw26I	GTCTC	3 cut(s)	12, 310, 393
AlwNI	CAGNNNCTG	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	230
BbsI	GAAGAC	2 cut(s)	11, 89
BccI	CCATC	4 cut(s)	71, 314, 482, 580
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	246, 353
BcoDI	GTCTC	3 cut(s)	12, 310, 393
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	1 cut(s)	14
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	15
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	2 cut(s)	246, 353
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	3 cut(s)	232, 357, 564
BmrFI	CCNGG	2 cut(s)	246, 353
BmsI	GCATC	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	11, 89
Bpu1102I	GCTNAGC	1 cut(s)	192
BsaHI	GRCGYC	2 cut(s)	5, 231
BseBI	CCWGG	2 cut(s)	246, 353
BseMII	CTCAG	5 cut(s)	183, 272, 375, 390, 404
BseYI	CCCAGC	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	230
BsmAI	GTCTC	3 cut(s)	12, 310, 393
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	508
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	5 cut(s)	184, 271, 376, 391, 403
BspLI	GGNNCC	3 cut(s)	232, 357, 564
BspT107I	GGYRCC	1 cut(s)	230
BssNI	GRCGYC	2 cut(s)	5, 231
Bst2UI	CCWGG	2 cut(s)	246, 353
Bst4CI	ACNGT	1 cut(s)	241
BstACI	GRCGYC	2 cut(s)	5, 231
BstC8I	GCNNGC	2 cut(s)	336, 340
BstDEI	CTNAG	5 cut(s)	192, 258, 384, 390, 399
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstMAI	GTCTC	3 cut(s)	12, 310, 393
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 348, 580
BstNI	CCWGG	2 cut(s)	246, 353
BstSCI	CCNGG	2 cut(s)	244, 351
BstV2I	GAAGAC	2 cut(s)	11, 89
BtgZI	GCGATG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	237, 249, 381
Cac8I	GCNNGC	2 cut(s)	336, 340
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	367
CseI	GACGC	1 cut(s)	5
Csp6I	GTAC	2 cut(s)	242, 394
CviJI	RGCY	8 cut(s)	60, 117, 125, 191, 287, 351, 441, 495
CviKI_1	RGCY	8 cut(s)	60, 117, 125, 191, 287, 351, 441, 495
CviQI	GTAC	2 cut(s)	242, 394
DdeI	CTNAG	5 cut(s)	192, 258, 384, 390, 399
DinI	GGCGCC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	244, 351
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	12
FaiI	YATR	2 cut(s)	329, 577
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
Fnu4HI	GCNGC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	14
GsaI	CCCAGC	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	234
HgaI	GACGC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	2 cut(s)	5, 231
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	493
HinfI	GANTC	3 cut(s)	386, 403, 530
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	5 cut(s)	268, 276, 400, 445, 549
Hpy8I	GTNNAC	1 cut(s)	423
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	167, 216, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 348, 580
HpyF3I	CTNAG	5 cut(s)	192, 258, 384, 390, 399
Hsp92I	GRCGYC	2 cut(s)	5, 231
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	513
MluCI	AATT	4 cut(s)	197, 429, 435, 451
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	395, 412
MnlI	CCTC	3 cut(s)	79, 98, 267
MseI	TTAA	2 cut(s)	200, 408
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	31
MspR9I	CCNGG	2 cut(s)	246, 353
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	2 cut(s)	246, 353
MwoI	GCNNNNNNNGC	3 cut(s)	114, 348, 580
NarI	GGCGCC	1 cut(s)	231
NlaIV	GGNNCC	3 cut(s)	232, 357, 564
NmuCI	GTSAC	1 cut(s)	513
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	530
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	2 cut(s)	394, 411
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	2 cut(s)	394, 411
Psp6I	CCWGG	2 cut(s)	244, 351
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	244, 351
PspN4I	GGNNCC	3 cut(s)	232, 357, 564
PspPI	GGNCC	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	243, 395
RsaNI	GTAC	2 cut(s)	242, 394
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	200, 408
SatI	GCNGC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	2 cut(s)	395, 412
ScrFI	CCNGG	2 cut(s)	246, 353
SetI	ASST	4 cut(s)	134, 193, 259, 497
SfaNI	GCATC	1 cut(s)	117
SfoI	GGCGCC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	4 cut(s)	197, 429, 435, 451
SsiI	CCGC	1 cut(s)	29
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	244, 351
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	103
TasI	AATT	4 cut(s)	197, 429, 435, 451
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	2 cut(s)	200, 408
Tru9I	TTAA	2 cut(s)	200, 408
TscAI	CASTG	3 cut(s)	244, 256, 388
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	1 cut(s)	537
TspRI	CASTG	3 cut(s)	244, 256, 388
VpaK11BI	GGWCC	1 cut(s)	367
XspI	CTAG	1 cut(s)	360
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.