Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Forward (+)

6562749 .. 6565720

Gene Structure 2972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCATCTGGGTTTTGCTCACTGGCTCTAACTGTCACCACCTCCTTATTCTCGTCCCACGCGATTACACGGCGCGTTCTACCCATTCTACGGTGGCGTTCCAGTTCTATGTCCCTTTCTCCGCTGCGTCATTCCCGCGCTTTATCAGCTGCAACAACTGTTCCGATAAGCTCATCCTTCACGTGGGACGACGTAATCGAGACCGGTCGGGCAGAGTACAACTCTTCCGATCTCACCGGATTTTTCGAGAAAATCAACCGCTGCAATCGCGGATCCGAAAAGTTAGGTGAGTTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCATAAAAGATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTTACATTTTCACAAAATGGTTCTTGTCCTGACCGTGTTGATGGCTATGTAACGCTTAATCTGATGCTTCAAAAGCCTGAAGATAGAACCAGAGCAGTTGCAGATGTGATCAAAATATTGGGTGACAAAGGAATCATTCCAGGAATACGTAATGAGCTGTATCCTGTGAAACCATCGTTTAATGCCCCGGTCTTTTTTTCTCTAGAGCGTGCTGCTGCTCCTTATTTCGGAATTAAGGGTTACGGAGTTCACATGAATGGGTATGTAGAAAGAGATGGACAGAAATTACTGTGGATAGGTAAGAGAAGTCTCTCAAAATCCACGTATCCAGGAATGCTTGATCATCTGGTTGCTGGAGGATTGCCTCACGGGATTAGCTGCGGTGGAAATCTAGTAAAGGAATGTGAAGAGGAAGCTGGGATTTCCAGAGCCATTGCTGATAGGGCAATAGCGGTTGGTGCTGTCTCATATTTGGACATCGATCAGTACTGTTTCAAACGTGATGTGCTGTTTTGTTATGATTTGGAACTCCCTGAAGATTTTGTTCCCAAAAATCAAGATGGAGAAGTTGAGAGCTTCAAGTTGATTCCAGTAGCCCAAGTTGCTAGTGTGATTAAGAAAACTAGTTTCTTCAAGGCGAACTGTTCCCTTGTCATTATTGACTTCTTGTTTCGGCACGGGTTTATCAGACCAGAATCATCGGGTTACTTGGATCTATACCAACGCCTGAGGAATAGAGATTGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

374

Amino Acids

41.92

Weight (kDa)

7.57

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4743	PF15916	81 - 204	2.4e-37	Domain of unknown function (DUF4743)
NUDIX	PF00293	213 - 329	1.4e-06	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	62, 75, 138, 270
AciI	CCGC	6 cut(s)	122, 136, 259, 270, 756, 827
AclWI	GGATC	3 cut(s)	267, 280, 1095
AcuI	CTGAAG	2 cut(s)	474, 930
AcvI	CACGTG	1 cut(s)	183
AfaI	GTAC	3 cut(s)	218, 353, 863
AfiI	CCNNNNNNNGG	3 cut(s)	90, 183, 602
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	446, 871, 955, 1009
AhlI	ACTAGT	1 cut(s)	998
AjnI	CCWGG	2 cut(s)	514, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	6 cut(s)	149, 171, 532, 753, 791, 951
AluI	AGCT	6 cut(s)	149, 171, 532, 753, 791, 951
Alw26I	GTCTC	3 cut(s)	194, 689, 844
AlwI	GGATC	3 cut(s)	267, 280, 1095
ApeKI	GCWGC	6 cut(s)	124, 149, 261, 587, 590, 753
AsiGI	ACCGGT	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	75, 140
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	4 cut(s)	28, 226, 299, 509
AxyI	CCTNAGG	1 cut(s)	1103
BamHI	GGATCC	1 cut(s)	272
BbrPI	CACGTG	1 cut(s)	183
BbvI	GCAGC	6 cut(s)	111, 136, 248, 574, 577, 740
BccI	CCATC	4 cut(s)	410, 556, 644, 929
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	516, 705
BciVI	GTATCC	2 cut(s)	546, 711
BclI	TGATCA	2 cut(s)	483, 715
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	3 cut(s)	194, 689, 844
BcuI	ACTAGT	1 cut(s)	998
BfaI	CTAG	4 cut(s)	578, 767, 981, 999
BfuI	GTATCC	2 cut(s)	546, 711
BisI	GCNGC	6 cut(s)	125, 150, 262, 588, 591, 754
BlsI	GCNGC	6 cut(s)	126, 151, 263, 589, 592, 755
BmcAI	AGTACT	2 cut(s)	353, 863
Bme1390I	CCNGG	3 cut(s)	516, 563, 705
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	3 cut(s)	516, 563, 705
BmsI	GCATC	2 cut(s)	14, 429
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	563
Bsa29I	ATCGAT	1 cut(s)	855
BsaAI	YACGTR	3 cut(s)	183, 524, 699
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	2 cut(s)	203, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 183, 602
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	3 cut(s)	27, 102, 965
Bse21I	CCTNAGG	1 cut(s)	1103
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	2 cut(s)	516, 705
BseCI	ATCGAT	1 cut(s)	855
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	3 cut(s)	90, 183, 602
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	1 cut(s)	1094
BseNI	ACTGG	3 cut(s)	27, 102, 965
BseXI	GCAGC	6 cut(s)	111, 136, 248, 574, 577, 740
BseYI	CCCAGC	1 cut(s)	791
Bsh1236I	CGCG	4 cut(s)	62, 75, 138, 270
Bsh1285I	CGRYCG	1 cut(s)	208
BshTI	ACCGGT	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	855
BsiEI	CGRYCG	1 cut(s)	208
BsiSI	CCGG	3 cut(s)	204, 237, 563
BslFI	GGGAC	3 cut(s)	40, 97, 200
BslI	CCNNNNNNNGG	3 cut(s)	90, 183, 602
BsmAI	GTCTC	3 cut(s)	194, 689, 844
BsmFI	GGGAC	3 cut(s)	40, 97, 200
BsmI	GAATGC	1 cut(s)	714
Bso31I	GGTCTC	1 cut(s)	194
Bsp143I	GATC	6 cut(s)	229, 272, 483, 715, 856, 1087
BspACI	CCGC	6 cut(s)	122, 136, 259, 270, 756, 827
BspCNI	CTCAG	1 cut(s)	1095
BspDI	ATCGAT	1 cut(s)	855
BspFNI	CGCG	4 cut(s)	62, 75, 138, 270
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	3 cut(s)	267, 280, 1095
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	807
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	27, 102, 965
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	6 cut(s)	229, 272, 483, 715, 856, 1087
Bst2UI	CCWGG	2 cut(s)	516, 705
Bst4CI	ACNGT	7 cut(s)	34, 93, 160, 410, 666, 866, 1019
Bst6I	CTCTTC	2 cut(s)	229, 777
BstBAI	YACGTR	3 cut(s)	183, 524, 699
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	1 cut(s)	1103
BstF5I	GGATG	1 cut(s)	173
BstFNI	CGCG	4 cut(s)	62, 75, 138, 270
BstHHI	GCGC	2 cut(s)	75, 140
BstKTI	GATC	6 cut(s)	232, 275, 486, 718, 859, 1090
BstMAI	GTCTC	3 cut(s)	194, 689, 844
BstMBI	GATC	6 cut(s)	229, 272, 483, 715, 856, 1087
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 267, 448, 818, 833, 977
BstNI	CCWGG	2 cut(s)	516, 705
BstSCI	CCNGG	3 cut(s)	514, 561, 703
BstSNI	TACGTA	1 cut(s)	524
BstUI	CGCG	4 cut(s)	62, 75, 138, 270
BstV1I	GCAGC	6 cut(s)	111, 136, 248, 574, 577, 740
BstX2I	RGATCY	2 cut(s)	272, 1087
BstYI	RGATCY	2 cut(s)	272, 1087
Bsu15I	ATCGAT	1 cut(s)	855
Bsu36I	CCTNAGG	1 cut(s)	1103
BsuI	GTATCC	2 cut(s)	546, 711
BsuTUI	ATCGAT	1 cut(s)	855
BtsCI	GGATG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	585
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	2 cut(s)	75, 140
Cfr10I	RCCGGY	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	855
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	217, 352, 862
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	2 cut(s)	368, 628
CviQI	GTAC	3 cut(s)	217, 352, 862
DdeI	CTNAG	1 cut(s)	1103
DpnI	GATC	6 cut(s)	231, 274, 485, 717, 858, 1089
DpnII	GATC	6 cut(s)	229, 272, 483, 715, 856, 1087
Eam1104I	CTCTTC	2 cut(s)	229, 777
EarI	CTCTTC	2 cut(s)	229, 777
Eco105I	TACGTA	1 cut(s)	524
Eco31I	GGTCTC	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	474, 930
Eco72I	CACGTG	1 cut(s)	183
Eco81I	CCTNAGG	1 cut(s)	1103
EcoRII	CCWGG	2 cut(s)	514, 703
EcoRV	GATATC	1 cut(s)	373
FaeI	CATG	2 cut(s)	371, 631
FaqI	GGGAC	3 cut(s)	40, 97, 200
FatI	CATG	2 cut(s)	367, 627
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	2 cut(s)	483, 715
Fnu4HI	GCNGC	6 cut(s)	125, 150, 262, 588, 591, 754
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	6 cut(s)	125, 150, 262, 588, 591, 754
FspBI	CTAG	4 cut(s)	578, 767, 981, 999
GlaI	GCGC	2 cut(s)	74, 139
GluI	GCNGC	6 cut(s)	125, 150, 262, 588, 591, 754
GsaI	CCCAGC	1 cut(s)	795
GsuI	CTGGAG	1 cut(s)	750
HapII	CCGG	3 cut(s)	204, 237, 563
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	2 cut(s)	75, 140
Hin1II	CATG	2 cut(s)	371, 631
Hin6I	GCGC	2 cut(s)	73, 138
HinP1I	GCGC	2 cut(s)	73, 138
HinfI	GANTC	3 cut(s)	507, 961, 1070
HpaII	CCGG	3 cut(s)	204, 237, 563
HphI	GGTGA	4 cut(s)	28, 226, 299, 509
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	6 cut(s)	165, 229, 277, 438, 605, 1064
Hpy188III	TCNNGA	7 cut(s)	199, 247, 368, 404, 578, 801, 932
Hpy8I	GTNNAC	1 cut(s)	625
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	7 cut(s)	34, 93, 160, 410, 666, 866, 1019
HpyCH4IV	ACGT	5 cut(s)	182, 192, 523, 698, 874
HpyCH4V	TGCA	3 cut(s)	152, 264, 476
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 267, 448, 818, 833, 977
HpyF3I	CTNAG	1 cut(s)	1103
HpySE526I	ACGT	5 cut(s)	182, 192, 523, 698, 874
Hsp92II	CATG	2 cut(s)	371, 631
HspAI	GCGC	2 cut(s)	73, 138
Ksp22I	TGATCA	2 cut(s)	483, 715
Kzo9I	GATC	6 cut(s)	229, 272, 483, 715, 856, 1087
LmnI	GCTCC	1 cut(s)	598
Lsp1109I	GCAGC	6 cut(s)	111, 136, 248, 574, 577, 740
LweI	GCATC	2 cut(s)	14, 429
MaeI	CTAG	4 cut(s)	578, 767, 981, 999
MaeII	ACGT	5 cut(s)	182, 192, 523, 698, 874
MaeIII	GTNAC	5 cut(s)	34, 424, 497, 614, 1079
MalI	GATC	6 cut(s)	231, 274, 485, 717, 858, 1089
MboI	GATC	6 cut(s)	229, 272, 483, 715, 856, 1087
MboII	GAAGA	5 cut(s)	216, 467, 794, 923, 997
MflI	RGATCY	2 cut(s)	272, 1087
MluCI	AATT	2 cut(s)	606, 659
MnlI	CCTC	7 cut(s)	52, 304, 351, 725, 750, 778, 1098
MseI	TTAA	4 cut(s)	432, 555, 609, 990
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	3 cut(s)	124, 149, 261
MspI	CCGG	3 cut(s)	204, 237, 563
MspR9I	CCNGG	3 cut(s)	516, 563, 705
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	516, 705
MvnI	CGCG	4 cut(s)	62, 75, 138, 270
MwoI	GCNNNNNNNGC	6 cut(s)	146, 267, 448, 818, 833, 977
NciI	CCSGG	1 cut(s)	563
NdeII	GATC	6 cut(s)	229, 272, 483, 715, 856, 1087
NlaIII	CATG	2 cut(s)	371, 631
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	2 cut(s)	34, 497
PagI	TCATGA	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 195
PctI	GAATGC	1 cut(s)	714
PfeI	GAWTC	3 cut(s)	507, 961, 1070
PfoI	TCCNGGA	2 cut(s)	514, 703
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	126, 151, 263, 589, 592, 755
PmaCI	CACGTG	1 cut(s)	183
PmlI	CACGTG	1 cut(s)	183
Ppu21I	YACGTR	3 cut(s)	183, 524, 699
Psp6I	CCWGG	2 cut(s)	514, 703
PspCI	CACGTG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	2 cut(s)	514, 703
PspN4I	GGNNCC	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	272, 1087
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	3 cut(s)	218, 353, 863
RsaNI	GTAC	3 cut(s)	217, 352, 862
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	4 cut(s)	432, 555, 609, 990
SatI	GCNGC	6 cut(s)	125, 150, 262, 588, 591, 754
Sau3AI	GATC	6 cut(s)	229, 272, 483, 715, 856, 1087
ScaI	AGTACT	2 cut(s)	353, 863
ScrFI	CCNGG	3 cut(s)	516, 563, 705
SfaNI	GCATC	2 cut(s)	14, 429
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SnaBI	TACGTA	1 cut(s)	524
SpeI	ACTAGT	1 cut(s)	998
Sse9I	AATT	2 cut(s)	606, 659
SsiI	CCGC	6 cut(s)	122, 136, 259, 270, 756, 827
SspI	AATATT	1 cut(s)	492
SspMI	CTAG	4 cut(s)	578, 767, 981, 999
StyD4I	CCNGG	3 cut(s)	514, 561, 703
TaaI	ACNGT	7 cut(s)	34, 93, 160, 410, 666, 866, 1019
TaiI	ACGT	5 cut(s)	185, 195, 526, 701, 877
TaqI	TCGA	3 cut(s)	198, 246, 855
TasI	AATT	2 cut(s)	606, 659
TatI	WGTACW	3 cut(s)	216, 351, 861
TfiI	GAWTC	3 cut(s)	507, 961, 1070
Tru1I	TTAA	4 cut(s)	432, 555, 609, 990
Tru9I	TTAA	4 cut(s)	432, 555, 609, 990
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	34, 497
TseI	GCWGC	6 cut(s)	124, 149, 261, 587, 590, 753
Tsp45I	GTSAC	2 cut(s)	34, 497
TspDTI	ATGAA	4 cut(s)	283, 323, 356, 644
TspGWI	ACGGA	2 cut(s)	362, 633
TspRI	CASTG	1 cut(s)	27
XbaI	TCTAGA	1 cut(s)	577
XspI	CTAG	4 cut(s)	578, 767, 981, 999
ZrmI	AGTACT	2 cut(s)	353, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.