Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Reverse (-)

4251455 .. 4254670

Gene Structure 3216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG057900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCAATCGGAGTTCCGTTCCTTCGTAATTGAGGACCAAATCGTTGGGTACATTCACAACGGATTTGCCGAGAATTTACGGAGTTACCAGGACGTTTTTACTTTTCCACCAGGCCAGGTAACCCTGCATTCTTCGCTGAGCTCACCCGAGGATAGGACAAGAGCTGTTGGGGATGTGGTTAAGAGCTTAGGGGAAGAATTGATTCCAGGTATAAGAAATGAGTTTTACCCGGTGACGTCGGCTTTTGGGGCTCCAATATATTTCTCTCTTGAACGTGCAGCCGCTCCTTACTTTGGAATAAAGGTTTATGGAGTGCATATGTGTGGCTATGTTGAGAAAGATGGGAAGGAATTTCTATGGATAGGGAAGAGAAGTCAACAGAAACAGACCTATCCAGGGATGCTTGATCATCTTGTTGCTGGTGGACTGCCTCATGGGGTAGCTTGTGGGGACAATGTTGTGAAGGAATGTGAAGAGGAAGCCGGAATACCAAGCTCCATTTCCAAGGGTGCTGTACCAGTTGGTGCTGTTTCGTATATGGACATTGATGGGTATAGTTACAAAAGGGATGTCTTGTTTTGCTATGATTTAAAACTCCCTGAGAGCTTCATGCCTAAGAATCAAGATGGAGAGGTGGAGAGTTTCAAGTTGATCCCTGTGACGCATGTTGCGAACATCATCCGGAGGACACCATTTTTCAAGCCAAATTGTTCACTTGTCGTCATTGATTTCCTGTTTCGACATGGGTATTTCTCTTTTTCTGTCATCATGCTTACATTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

261

Amino Acids

29.2

Weight (kDa)

5.54

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4743	PF15916	2 - 101	4.5e-32	Domain of unknown function (DUF4743)
NUDIX	PF00293	111 - 223	1.8e-06	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	284
AccIII	TCCGGA	1 cut(s)	681
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	1 cut(s)	646
AcsI	RAATTY	2 cut(s)	73, 350
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	2 cut(s)	50, 516
AfiI	CCNNNNNNNGG	3 cut(s)	153, 293, 396
AgsI	TTSAA	3 cut(s)	272, 646, 700
AjnI	CCWGG	5 cut(s)	87, 109, 114, 205, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	6 cut(s)	141, 164, 186, 443, 495, 606
AluI	AGCT	6 cut(s)	141, 164, 186, 443, 495, 606
Alw21I	GWGCWC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	646
Ama87I	CYCGRG	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	681
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	73, 350
ArsI	GACNNNNNNTTYG	2 cut(s)	555, 587
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	135, 244
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	143, 253
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	3 cut(s)	335, 542, 620
BciT130I	CCWGG	5 cut(s)	89, 111, 116, 207, 396
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	230
BisI	GCNGC	2 cut(s)	279, 282
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	280, 283
Bme1390I	CCNGG	6 cut(s)	89, 111, 116, 207, 230, 396
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	6 cut(s)	89, 111, 116, 207, 230, 396
BmsI	GCATC	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	187
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	147, 395, 504
BsaWI	WCCGGW	1 cut(s)	681
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 293, 396
Bse1I	ACTGG	1 cut(s)	518
BseAI	TCCGGA	1 cut(s)	681
BseBI	CCWGG	5 cut(s)	89, 111, 116, 207, 396
BseDI	CCNNGG	3 cut(s)	147, 395, 504
BseGI	GGATG	4 cut(s)	178, 405, 574, 678
BseLI	CCNNNNNNNGG	3 cut(s)	153, 293, 396
BseMII	CTCAG	2 cut(s)	128, 591
BseNI	ACTGG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	230, 483, 682
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	153, 293, 396
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	143, 253
Bsp13I	TCCGGA	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	406, 651
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	129, 592
BspEI	TCCGGA	1 cut(s)	681
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	646
BsrBI	CCGCTC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	3 cut(s)	147, 395, 504
BssMI	GATC	2 cut(s)	406, 651
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	5 cut(s)	89, 111, 116, 207, 396
Bst6I	CTCTTC	2 cut(s)	362, 468
BstACI	GRCGYC	1 cut(s)	236
BstDEI	CTNAG	4 cut(s)	137, 187, 600, 615
BstEII	GGTNACC	1 cut(s)	118
BstF5I	GGATG	4 cut(s)	178, 405, 574, 678
BstKTI	GATC	2 cut(s)	409, 654
BstMBI	GATC	2 cut(s)	406, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 248
BstNI	CCWGG	5 cut(s)	89, 111, 116, 207, 396
BstNSI	RCATGY	1 cut(s)	668
BstPI	GGTNACC	1 cut(s)	118
BstSCI	CCNGG	6 cut(s)	87, 109, 114, 205, 228, 394
BstV1I	GCAGC	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	4 cut(s)	178, 405, 574, 678
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	1 cut(s)	670
Csp6I	GTAC	2 cut(s)	49, 515
CviAII	CATG	5 cut(s)	434, 610, 665, 743, 769
CviQI	GTAC	2 cut(s)	49, 515
DdeI	CTNAG	4 cut(s)	137, 187, 600, 615
DpnI	GATC	2 cut(s)	408, 653
DpnII	GATC	2 cut(s)	406, 651
DraI	TTTAAA	1 cut(s)	591
Eam1104I	CTCTTC	2 cut(s)	362, 468
EarI	CTCTTC	2 cut(s)	362, 468
Ecl136II	GAGCTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	2 cut(s)	143, 253
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	141
EcoO65I	GGTNACC	1 cut(s)	118
EcoRII	CCWGG	5 cut(s)	87, 109, 114, 205, 394
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	2 cut(s)	143, 253
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	5 cut(s)	437, 613, 668, 746, 772
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	5 cut(s)	433, 609, 664, 742, 768
FauNDI	CATATG	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	279, 282
FokI	GGATG	4 cut(s)	185, 412, 581, 665
FriOI	GRGCYC	2 cut(s)	143, 253
Fsp4HI	GCNGC	2 cut(s)	279, 282
GluI	GCNGC	2 cut(s)	279, 282
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	3 cut(s)	230, 483, 682
HgaI	GACGC	1 cut(s)	670
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	5 cut(s)	437, 613, 668, 746, 772
HincII	GTYRAC	1 cut(s)	377
HindII	GTYRAC	1 cut(s)	377
HinfI	GANTC	2 cut(s)	202, 619
HpaII	CCGG	3 cut(s)	230, 483, 682
HphI	GGTGA	2 cut(s)	135, 244
Hpy166II	GTNNAC	3 cut(s)	377, 425, 713
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	269, 623, 682
Hpy8I	GTNNAC	3 cut(s)	377, 425, 713
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	3 cut(s)	31, 340, 457
HpyCH4IV	ACGT	3 cut(s)	93, 236, 274
HpyCH4V	TGCA	4 cut(s)	4, 127, 278, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 248
HpyF3I	CTNAG	4 cut(s)	137, 187, 600, 615
HpySE526I	ACGT	3 cut(s)	93, 236, 274
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	5 cut(s)	437, 613, 668, 746, 772
Kpn2I	TCCGGA	1 cut(s)	681
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	406, 651
LmnI	GCTCC	3 cut(s)	256, 289, 500
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	1 cut(s)	390
MaeII	ACGT	3 cut(s)	93, 236, 274
MaeIII	GTNAC	5 cut(s)	83, 118, 232, 557, 658
MalI	GATC	2 cut(s)	408, 653
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	2 cut(s)	406, 651
MboII	GAAGA	4 cut(s)	123, 206, 379, 485
MhlI	GDGCHC	2 cut(s)	143, 253
MluCI	AATT	5 cut(s)	27, 73, 197, 350, 706
MnlI	CCTC	6 cut(s)	25, 142, 441, 469, 625, 678
MroI	TCCGGA	1 cut(s)	681
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	2 cut(s)	180, 590
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	3 cut(s)	230, 483, 682
MspR9I	CCNGG	6 cut(s)	89, 111, 116, 207, 230, 396
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	5 cut(s)	89, 111, 116, 207, 396
MwoI	GCNNNNNNNGC	2 cut(s)	133, 248
NciI	CCSGG	1 cut(s)	230
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	2 cut(s)	406, 651
NlaIII	CATG	5 cut(s)	437, 613, 668, 746, 772
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	232, 658
NspI	RCATGY	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 668
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	202, 619
PkrI	GCNGC	2 cut(s)	280, 283
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	5 cut(s)	87, 109, 114, 205, 394
PspEI	GGTNACC	1 cut(s)	118
PspGI	CCWGG	5 cut(s)	87, 109, 114, 205, 394
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	34
RsaI	GTAC	2 cut(s)	50, 516
RsaNI	GTAC	2 cut(s)	49, 515
RseI	CAYNNNNRTG	1 cut(s)	321
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	180, 590
SatI	GCNGC	2 cut(s)	279, 282
Sau3AI	GATC	2 cut(s)	406, 651
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	6 cut(s)	89, 111, 116, 207, 230, 396
SduI	GDGCHC	2 cut(s)	143, 253
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	5 cut(s)	27, 73, 197, 350, 706
SsiI	CCGC	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	6 cut(s)	87, 109, 114, 205, 228, 394
StyI	CCWWGG	1 cut(s)	504
TaiI	ACGT	3 cut(s)	96, 239, 277
TaqI	TCGA	2 cut(s)	739, 780
TasI	AATT	5 cut(s)	27, 73, 197, 350, 706
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	202, 619
Tru1I	TTAA	2 cut(s)	180, 590
Tru9I	TTAA	2 cut(s)	180, 590
TseFI	GTSAC	2 cut(s)	232, 658
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	2 cut(s)	232, 658
TspDTI	ATGAA	1 cut(s)	598
TspGWI	ACGGA	3 cut(s)	5, 75, 94
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	2 cut(s)	73, 350
XceI	RCATGY	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	201
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.